Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
11:19:08 (900967): wrapper (7.7.26015): starting
11:19:08 (900967): wrapper: running run_atlas (--nthreads 4)
[2026-01-11 11:19:08] Arguments: --nthreads 4
[2026-01-11 11:19:08] Threads: 4
[2026-01-11 11:19:08] Checking for CVMFS
[2026-01-11 11:19:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 11:19:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 11:19:08] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 11:19:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 11:19:08] 2.12.7.0 11818 504 56628 155013 0 97 3996387 6144000 4518 130560 0 2356457 99.992 23639 802 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-11 11:19:08] CVMFS is ok
[2026-01-11 11:19:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 11:19:08] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-11 11:19:08] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-11 11:19:08] Further information can be found at the LHC@home message board.
[2026-01-11 11:19:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 11:19:08] Checking for apptainer binary...
[2026-01-11 11:19:08] apptainer is not installed, using version from CVMFS
[2026-01-11 11:19:08] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 11:19:08] biggy
[2026-01-11 11:19:08] apptainer works
[2026-01-11 11:19:08] Set ATHENA_PROC_NUMBER=4
[2026-01-11 11:19:08] Set ATHENA_CORE_NUMBER=4
[2026-01-11 11:19:08] Starting ATLAS job with PandaID=6965940968
[2026-01-11 11:19:08] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/single_8TB/boinc-client/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 11:46:21]  *** The last 200 lines of the pilot log: ***
[2026-01-11 11:46:21]  mtime=0
[2026-01-11 11:46:21]  protocol_id=None
[2026-01-11 11:46:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-11 11:46:21]  replicas=None
[2026-01-11 11:46:21]  scope=mc16_13TeV
[2026-01-11 11:46:21]  status=None
[2026-01-11 11:46:21]  status_code=0
[2026-01-11 11:46:21]  storage_token=
[2026-01-11 11:46:21]  surl=/single_8TB/boinc-client/slots/11/PanDA_Pilot-6965940968/log.47962010._002948.job.log.tgz.1
[2026-01-11 11:46:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/93/b6/log.47962010._002948.job.log.tgz.1
[2026-01-11 11:46:21]  workdir=None
[2026-01-11 11:46:21] ]
[2026-01-11 11:46:21] 2026-01-11 10:45:42,089 | INFO     | transferring file log.47962010._002948.job.log.tgz.1 from /single_8TB/boinc-client/slots/11/PanDA_Pilot-6965940968/log.47962010._002948.job.log.tgz.1 to /single_8T
[2026-01-11 11:46:21] 2026-01-11 10:45:42,089 | INFO     | executing command: /usr/bin/env mv /single_8TB/boinc-client/slots/11/PanDA_Pilot-6965940968/log.47962010._002948.job.log.tgz.1 /single_8TB/boinc-client/slots/11/lo
[2026-01-11 11:46:21] 2026-01-11 10:45:42,100 | INFO     | adding to output.list: log.47962010._002948.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/93/b6/log.47962010._002948.job.log.tgz.
[2026-01-11 11:46:21] 2026-01-11 10:45:42,101 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-11 11:46:21] 2026-01-11 10:45:42,101 | INFO     | summary of transferred files:
[2026-01-11 11:46:21] 2026-01-11 10:45:42,101 | INFO     |  -- lfn=log.47962010._002948.job.log.tgz.1, status_code=0, status=transferred
[2026-01-11 11:46:21] 2026-01-11 10:45:42,101 | INFO     | stage-out finished correctly
[2026-01-11 11:46:21] 2026-01-11 10:45:42,526 | INFO     | time since job start (1588s) is within the limit (349056.0s)
[2026-01-11 11:46:21] 2026-01-11 10:45:43,582 | INFO     | monitor loop #125: job 0:6965940968 is in state 'finished'
[2026-01-11 11:46:21] 2026-01-11 10:45:43,582 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 11:46:21] 2026-01-11 10:45:44,531 | INFO     | time since job start (1590s) is within the limit (349056.0s)
[2026-01-11 11:46:21] 2026-01-11 10:45:45,583 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-11 11:46:21] 2026-01-11 10:45:46,093 | INFO     | monitor loop #126: job 0:6965940968 is in state 'finished'
[2026-01-11 11:46:21] 2026-01-11 10:45:46,093 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 11:46:21] 2026-01-11 10:45:46,499 | INFO     | job 6965940968 has state=finished
[2026-01-11 11:46:21] 2026-01-11 10:45:46,499 | INFO     | preparing for final server update for job 6965940968 in state='finished'
[2026-01-11 11:46:21] 2026-01-11 10:45:46,500 | INFO     | this job has now completed (state=finished)
[2026-01-11 11:46:21] 2026-01-11 10:45:46,500 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-11 11:46:21] 2026-01-11 10:45:46,500 | INFO     | log transfer has been attempted: DONE
[2026-01-11 11:46:21] 2026-01-11 10:45:46,500 | INFO     | job 6965940968 has finished - writing final server update
[2026-01-11 11:46:21] 2026-01-11 10:45:46,500 | INFO     | total number of processed events: 50 (read)
[2026-01-11 11:46:21] 2026-01-11 10:45:46,505 | INFO     | executing command: lscpu
[2026-01-11 11:46:21] 2026-01-11 10:45:46,526 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 11:46:21] 2026-01-11 10:45:46,536 | INFO     | time since job start (1592s) is within the limit (349056.0s)
[2026-01-11 11:46:21] 2026-01-11 10:45:48,541 | INFO     | time since job start (1594s) is within the limit (349056.0s)
[2026-01-11 11:46:21] 2026-01-11 10:45:48,595 | INFO     | monitor loop #127: job 0:6965940968 is in state 'finished'
[2026-01-11 11:46:21] 2026-01-11 10:45:48,595 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 11:46:21] 2026-01-11 10:45:49,482 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-11 11:46:21] 2026-01-11 10:45:49,485 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 5227.79165625
[2026-01-11 11:46:21] 2026-01-11 10:45:49,487 | INFO     | using path: /single_8TB/boinc-client/slots/11/PanDA_Pilot-6965940968/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 11:46:21] 2026-01-11 10:45:49,488 | INFO     | extracted standard info from prmon json
[2026-01-11 11:46:21] 2026-01-11 10:45:49,488 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 11:46:21] 2026-01-11 10:45:49,488 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 11:46:21] 2026-01-11 10:45:49,488 | INFO     | fitting pss+swap vs Time
[2026-01-11 11:46:21] 2026-01-11 10:45:49,488 | INFO     | sum of square deviations: 2120970.0
[2026-01-11 11:46:21] 2026-01-11 10:45:49,489 | INFO     | sum of deviations: 186298636.00000003
[2026-01-11 11:46:21] 2026-01-11 10:45:49,489 | INFO     | mean x: 1768127628.0
[2026-01-11 11:46:21] 2026-01-11 10:45:49,489 | INFO     | mean y: 2336501.210526316
[2026-01-11 11:46:21] 2026-01-11 10:45:49,489 | INFO     | intersect: -155303851408.24387
[2026-01-11 11:46:21] 2026-01-11 10:45:49,489 | INFO     | chi2: 0.00015121867885564252
[2026-01-11 11:46:21] 2026-01-11 10:45:49,489 | INFO     | current memory leak: 87.84 B/s (using 19 data points, chi2=0.00)
[2026-01-11 11:46:21] 2026-01-11 10:45:49,489 | INFO     | could have reported an average CPU frequency of 5256 MHz (4 samples)
[2026-01-11 11:46:21] 2026-01-11 10:45:49,489 | INFO     | ..............................
[2026-01-11 11:46:21] 2026-01-11 10:45:49,489 | INFO     | . Timing measurements:
[2026-01-11 11:46:21] 2026-01-11 10:45:49,489 | INFO     | . get job = 0 s
[2026-01-11 11:46:21] 2026-01-11 10:45:49,489 | INFO     | . initial setup = 1 s
[2026-01-11 11:46:21] 2026-01-11 10:45:49,489 | INFO     | . payload setup = 3 s
[2026-01-11 11:46:21] 2026-01-11 10:45:49,489 | INFO     | . stage-in = 0 s
[2026-01-11 11:46:21] 2026-01-11 10:45:49,490 | INFO     | . payload execution = 1567 s
[2026-01-11 11:46:21] 2026-01-11 10:45:49,490 | INFO     | . stage-out = 0 s
[2026-01-11 11:46:21] 2026-01-11 10:45:49,490 | INFO     | . log creation = 0 s
[2026-01-11 11:46:21] 2026-01-11 10:45:49,490 | INFO     | ..............................
[2026-01-11 11:46:21] 2026-01-11 10:45:49,561 | INFO     | 
[2026-01-11 11:46:21] 2026-01-11 10:45:49,561 | INFO     | job summary report
[2026-01-11 11:46:21] 2026-01-11 10:45:49,561 | INFO     | --------------------------------------------------
[2026-01-11 11:46:21] 2026-01-11 10:45:49,561 | INFO     | PanDA job id: 6965940968
[2026-01-11 11:46:21] 2026-01-11 10:45:49,561 | INFO     | task id: 47962010
[2026-01-11 11:46:21] 2026-01-11 10:45:49,561 | INFO     | errors: (none)
[2026-01-11 11:46:21] 2026-01-11 10:45:49,561 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 11:46:21] 2026-01-11 10:45:49,562 | INFO     | pilot state: finished 
[2026-01-11 11:46:21] 2026-01-11 10:45:49,562 | INFO     | transexitcode: 0
[2026-01-11 11:46:21] 2026-01-11 10:45:49,562 | INFO     | exeerrorcode: 0
[2026-01-11 11:46:21] 2026-01-11 10:45:49,562 | INFO     | exeerrordiag: 
[2026-01-11 11:46:21] 2026-01-11 10:45:49,562 | INFO     | exitcode: 0
[2026-01-11 11:46:21] 2026-01-11 10:45:49,562 | INFO     | exitmsg: OK
[2026-01-11 11:46:21] 2026-01-11 10:45:49,562 | INFO     | cpuconsumptiontime: 5438 s
[2026-01-11 11:46:21] 2026-01-11 10:45:49,562 | INFO     | nevents: 50
[2026-01-11 11:46:21] 2026-01-11 10:45:49,562 | INFO     | neventsw: 0
[2026-01-11 11:46:21] 2026-01-11 10:45:49,562 | INFO     | pid: 911590
[2026-01-11 11:46:21] 2026-01-11 10:45:49,562 | INFO     | pgrp: 911590
[2026-01-11 11:46:21] 2026-01-11 10:45:49,562 | INFO     | corecount: 4
[2026-01-11 11:46:21] 2026-01-11 10:45:49,562 | INFO     | event service: False
[2026-01-11 11:46:21] 2026-01-11 10:45:49,562 | INFO     | sizes: {0: 2284579, 2: 2284841, 11: 2284869, 1573: 2310544, 1574: 2310543, 1575: 2319615, 1578: 2319799, 1582: 2320045}
[2026-01-11 11:46:21] 2026-01-11 10:45:49,562 | INFO     | --------------------------------------------------
[2026-01-11 11:46:21] 2026-01-11 10:45:49,562 | INFO     | 
[2026-01-11 11:46:21] 2026-01-11 10:45:49,562 | INFO     | executing command: ls -lF /single_8TB/boinc-client/slots/11
[2026-01-11 11:46:21] 2026-01-11 10:45:49,577 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 11:46:21] 2026-01-11 10:45:49,577 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 11:46:21] 2026-01-11 10:45:49,577 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 11:46:21] 2026-01-11 10:45:49,577 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 11:46:21] 2026-01-11 10:45:49,577 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 11:46:21] 2026-01-11 10:45:49,577 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 11:46:21] 2026-01-11 10:45:49,577 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 11:46:21] 2026-01-11 10:45:49,577 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 11:46:21] 2026-01-11 10:45:49,577 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 11:46:21] 2026-01-11 10:45:49,577 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 11:46:21] 2026-01-11 10:45:49,577 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 11:46:21] 2026-01-11 10:45:49,577 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 11:46:21] 2026-01-11 10:45:49,577 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 11:46:21] 2026-01-11 10:45:49,577 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 11:46:21] 2026-01-11 10:45:49,577 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 11:46:21] 2026-01-11 10:45:49,577 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 11:46:21] 2026-01-11 10:45:49,578 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 11:46:21] 2026-01-11 10:45:49,578 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 11:46:21] 2026-01-11 10:45:49,578 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 11:46:21] 2026-01-11 10:45:49,578 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 11:46:21] 2026-01-11 10:45:49,578 | INFO     | job 6965940968 has completed (purged errors)
[2026-01-11 11:46:21] 2026-01-11 10:45:49,578 | INFO     | overall cleanup function is called
[2026-01-11 11:46:21] 2026-01-11 10:45:50,586 | INFO     | --- collectZombieJob: --- 10, [911590]
[2026-01-11 11:46:21] 2026-01-11 10:45:50,586 | INFO     | zombie collector waiting for pid 911590
[2026-01-11 11:46:21] 2026-01-11 10:45:50,586 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 11:46:21] 2026-01-11 10:45:50,586 | INFO     | collected zombie processes
[2026-01-11 11:46:21] 2026-01-11 10:45:50,587 | INFO     | will attempt to kill all subprocesses of pid=911590
[2026-01-11 11:46:21] 2026-01-11 10:45:50,710 | INFO     | process IDs to be killed: [911590] (in reverse order)
[2026-01-11 11:46:21] 2026-01-11 10:45:50,759 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 11:46:21] 2026-01-11 10:45:50,760 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 11:46:21] 2026-01-11 10:45:50,764 | INFO     | did not find any defunct processes belonging to 911590
[2026-01-11 11:46:21] 2026-01-11 10:45:50,768 | INFO     | did not find any defunct processes belonging to 911590
[2026-01-11 11:46:21] 2026-01-11 10:45:50,768 | INFO     | ready for new job
[2026-01-11 11:46:21] 2026-01-11 10:45:50,768 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 11:46:21] 2026-01-11 10:45:50,768 | INFO     | ***************************************
[2026-01-11 11:46:21] 2026-01-11 10:45:50,769 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 11:46:21] 2026-01-11 10:45:50,769 | INFO     | ***************************************
[2026-01-11 11:46:21] 2026-01-11 10:45:50,769 | INFO     | 
[2026-01-11 11:46:21] 2026-01-11 10:45:50,770 | INFO     | architecture information:
[2026-01-11 11:46:21] 2026-01-11 10:45:50,770 | INFO     | executing command: cat /etc/os-release
[2026-01-11 11:46:21] 2026-01-11 10:45:50,779 | INFO     | cat /etc/os-release:
[2026-01-11 11:46:21] NAME="CentOS Linux"
[2026-01-11 11:46:21] VERSION="7 (Core)"
[2026-01-11 11:46:21] ID="centos"
[2026-01-11 11:46:21] ID_LIKE="rhel fedora"
[2026-01-11 11:46:21] VERSION_ID="7"
[2026-01-11 11:46:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 11:46:21] ANSI_COLOR="0;31"
[2026-01-11 11:46:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 11:46:21] HOME_URL="https://www.centos.org/"
[2026-01-11 11:46:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 11:46:21] 
[2026-01-11 11:46:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 11:46:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 11:46:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 11:46:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 11:46:21] 
[2026-01-11 11:46:21] 2026-01-11 10:45:50,780 | INFO     | ***************************************
[2026-01-11 11:46:21] 2026-01-11 10:45:51,282 | INFO     | executing command: df -mP /single_8TB/boinc-client/slots/11
[2026-01-11 11:46:21] 2026-01-11 10:45:51,294 | INFO     | sufficient remaining disk space (3322937344000 B)
[2026-01-11 11:46:21] 2026-01-11 10:45:51,294 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 11:46:21] 2026-01-11 10:45:51,295 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 11:46:21] 2026-01-11 10:45:51,295 | INFO     | update_server=False
[2026-01-11 11:46:21] 2026-01-11 10:45:51,295 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 11:46:21] 2026-01-11 10:45:51,295 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 11:46:21] 2026-01-11 10:45:51,559 | INFO     | all data control threads have been joined
[2026-01-11 11:46:21] 2026-01-11 10:45:51,627 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 11:46:21] 2026-01-11 10:45:52,104 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 11:46:21] 2026-01-11 10:45:52,104 | INFO     | aborting loop
[2026-01-11 11:46:21] 2026-01-11 10:45:52,299 | INFO     | [job] retrieve thread has finished
[2026-01-11 11:46:21] 2026-01-11 10:45:52,299 | INFO     | [job] queue monitor thread has finished
[2026-01-11 11:46:21] 2026-01-11 10:45:52,306 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 11:46:21] 2026-01-11 10:45:52,433 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 11:46:21] 2026-01-11 10:45:52,460 | INFO     | all payload control threads have been joined
[2026-01-11 11:46:21] 2026-01-11 10:45:52,564 | INFO     | [data] control thread has finished
[2026-01-11 11:46:21] 2026-01-11 10:45:52,652 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 11:46:21] 2026-01-11 10:45:52,894 | INFO     | all job control threads have been joined
[2026-01-11 11:46:21] 2026-01-11 10:45:52,933 | INFO     | [payload] failed_post thread has finished
[2026-01-11 11:46:21] 2026-01-11 10:45:52,962 | INFO     | [data] copytool_in thread has finished
[2026-01-11 11:46:21] 2026-01-11 10:45:53,109 | INFO     | [job] job monitor thread has finished
[2026-01-11 11:46:21] 2026-01-11 10:45:53,465 | INFO     | [payload] control thread has finished
[2026-01-11 11:46:21] 2026-01-11 10:45:53,481 | INFO     | [payload] validate_post thread has finished
[2026-01-11 11:46:21] 2026-01-11 10:45:53,661 | INFO     | [job] validate thread has finished
[2026-01-11 11:46:21] 2026-01-11 10:45:53,735 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 11:46:21] 2026-01-11 10:45:53,899 | INFO     | [job] control thread has finished
[2026-01-11 11:46:21] 2026-01-11 10:45:54,656 | INFO     | [data] copytool_out thread has finished
[2026-01-11 11:46:21] 2026-01-11 10:45:55,632 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 11:46:21] 2026-01-11 10:46:02,271 | INFO     | job.realtimelogging is not enabled
[2026-01-11 11:46:21] 2026-01-11 10:46:03,276 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 11:46:21] 2026-01-11 10:46:16,287 | INFO     | [monitor] cgroup control has ended
[2026-01-11 11:46:21] 2026-01-11 10:46:16,300 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138402353792832)>', '<ExcThread(monitor, started 138401655269120)>']
[2026-01-11 11:46:21] 2026-01-11 10:46:21,323 | INFO     | all workflow threads have been joined
[2026-01-11 11:46:21] 2026-01-11 10:46:21,323 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 11:46:21] 2026-01-11 10:46:21,323 | INFO     | traces error code: 0
[2026-01-11 11:46:21] 2026-01-11 10:46:21,323 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 11:46:21] 2026-01-11 10:46:21,748 | INFO     | PID=904843 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-11 11:46:21] 2026-01-11 10:46:21,748 | INFO     | .. there are 6 such processes running
[2026-01-11 11:46:21] 2026-01-11 10:46:21,748 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 11:46:21] 2026-01-11 10:46:21,749 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 11:46:21] 2026-01-11 10:46:21,749 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 11:46:21] 2026-01-11 10:46:21,749 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 11:46:21] 2026-01-11 10:46:21,749 | INFO     | [monitor] control thread has ended
[2026-01-11 11:46:21] 2026-01-11 10:46:21,807 [wrapper] ==== pilot stdout END ====
[2026-01-11 11:46:21] 2026-01-11 10:46:21,809 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 11:46:21] 2026-01-11 10:46:21,811 [wrapper] pilotpid: 904843
[2026-01-11 11:46:21] 2026-01-11 10:46:21,812 [wrapper] Pilot exit status: 0
[2026-01-11 11:46:21] 2026-01-11 10:46:21,817 [wrapper] pandaids: 6965940968
[2026-01-11 11:46:21] 2026-01-11 10:46:21,849 [wrapper] cleanup supervisor_pilot  970496 904844
[2026-01-11 11:46:21] 2026-01-11 10:46:21,850 [wrapper] Test setup, not cleaning
[2026-01-11 11:46:21] 2026-01-11 10:46:21,852 [wrapper] apfmon messages muted
[2026-01-11 11:46:21] 2026-01-11 10:46:21,854 [wrapper] ==== wrapper stdout END ====
[2026-01-11 11:46:21] 2026-01-11 10:46:21,856 [wrapper] ==== wrapper stderr END ====
[2026-01-11 11:46:21]  *** Error codes and diagnostics ***
[2026-01-11 11:46:21]     "exeErrorCode": 0,
[2026-01-11 11:46:21]     "exeErrorDiag": "",
[2026-01-11 11:46:21]     "pilotErrorCode": 0,
[2026-01-11 11:46:21]     "pilotErrorDiag": "",
[2026-01-11 11:46:21]  *** Listing of results directory ***
[2026-01-11 11:46:21] total 433936
[2026-01-11 11:46:21] -rw-r--r-- 1 boinc boinc    579449 Jan 11 04:29 pilot3.tar.gz
[2026-01-11 11:46:21] -rwx------ 1 boinc boinc     36322 Jan 11 04:33 runpilot2-wrapper.sh
[2026-01-11 11:46:21] -rw-r--r-- 1 boinc boinc      5112 Jan 11 04:33 queuedata.json
[2026-01-11 11:46:21] -rw-r--r-- 1 boinc boinc       100 Jan 11 11:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 11:46:21] -rw-r--r-- 1 boinc boinc       105 Jan 11 11:19 job.xml
[2026-01-11 11:46:21] -rwxr-xr-x 1 boinc boinc      7986 Jan 11 11:19 run_atlas
[2026-01-11 11:46:21] -rw-r--r-- 2 boinc boinc 395458336 Jan 11 11:19 EVNT.47962006._000056.pool.root.1
[2026-01-11 11:46:21] -rw-r--r-- 2 boinc boinc    592604 Jan 11 11:19 input.tar.gz
[2026-01-11 11:46:21] drwxrwx--x 2 boinc boinc         5 Jan 11 11:19 shared
[2026-01-11 11:46:21] -rw-r--r-- 2 boinc boinc     15847 Jan 11 11:19 start_atlas.sh
[2026-01-11 11:46:21] -rw-r--r-- 1 boinc boinc         0 Jan 11 11:19 boinc_setup_complete
[2026-01-11 11:46:21] -rw-r--r-- 1 boinc boinc     10106 Jan 11 11:19 init_data.xml
[2026-01-11 11:46:21] -rw-r--r-- 1 boinc boinc         0 Jan 11 11:19 boinc_lockfile
[2026-01-11 11:46:21] -rw-r--r-- 1 boinc boinc      2889 Jan 11 11:19 pandaJob.out
[2026-01-11 11:46:21] -rw-r--r-- 1 boinc boinc      2142 Jan 11 11:19 stderr.txt
[2026-01-11 11:46:21] -rw------- 1 boinc boinc    989548 Jan 11 11:19 agis_schedconf.cvmfs.json
[2026-01-11 11:46:21] -rw------- 1 boinc boinc   1516240 Jan 11 11:19 agis_ddmendpoints.agis.ALL.json
[2026-01-11 11:46:21] drwx------ 5 boinc boinc        22 Jan 11 11:19 pilot3
[2026-01-11 11:46:21] -rw-r--r-- 1 boinc boinc       528 Jan 11 11:43 boinc_task_state.xml
[2026-01-11 11:46:21] -rw------- 1 boinc boinc        95 Jan 11 11:45 pilot_heartbeat.json
[2026-01-11 11:46:21] -rw------- 1 boinc boinc  43555519 Jan 11 11:45 HITS.47962010._002948.pool.root.1
[2026-01-11 11:46:21] -rw------- 1 boinc boinc      1029 Jan 11 11:45 memory_monitor_summary.json
[2026-01-11 11:46:21] -rw------- 1 boinc boinc    718495 Jan 11 11:45 log.47962010._002948.job.log.tgz.1
[2026-01-11 11:46:21] -rw------- 1 boinc boinc      8506 Jan 11 11:45 heartbeat.json
[2026-01-11 11:46:21] -rw-r--r-- 1 boinc boinc      8192 Jan 11 11:46 boinc_mmap_file
[2026-01-11 11:46:21] -rw-r--r-- 1 boinc boinc        26 Jan 11 11:46 wrapper_checkpoint.txt
[2026-01-11 11:46:21] -rw------- 1 boinc boinc       821 Jan 11 11:46 pilotlog.txt
[2026-01-11 11:46:21] -rw------- 1 boinc boinc    279964 Jan 11 11:46 log.47962010._002948.job.log.1
[2026-01-11 11:46:21] -rw------- 1 boinc boinc       353 Jan 11 11:46 output.list
[2026-01-11 11:46:21] -rw-r--r-- 1 boinc boinc       620 Jan 11 11:46 runtime_log
[2026-01-11 11:46:21] -rw------- 1 boinc boinc   1013760 Jan 11 11:46 result.tar.gz
[2026-01-11 11:46:21] -rw------- 1 boinc boinc       649 Jan 11 11:46 cchKDmMO1y8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm8fhKDmBecNPn.diag
[2026-01-11 11:46:21] -rw-r--r-- 1 boinc boinc      8955 Jan 11 11:46 runtime_log.err
[2026-01-11 11:46:21] HITS file was successfully produced:
[2026-01-11 11:46:21] -rw------- 1 boinc boinc 43555519 Jan 11 11:45 shared/HITS.pool.root.1
[2026-01-11 11:46:21]  *** Contents of shared directory: ***
[2026-01-11 11:46:21] total 429664
[2026-01-11 11:46:21] -rw-r--r-- 2 boinc boinc 395458336 Jan 11 11:19 ATLAS.root_0
[2026-01-11 11:46:21] -rw-r--r-- 2 boinc boinc    592604 Jan 11 11:19 input.tar.gz
[2026-01-11 11:46:21] -rw-r--r-- 2 boinc boinc     15847 Jan 11 11:19 start_atlas.sh
[2026-01-11 11:46:21] -rw------- 1 boinc boinc  43555519 Jan 11 11:45 HITS.pool.root.1
[2026-01-11 11:46:21] -rw------- 1 boinc boinc   1013760 Jan 11 11:46 result.tar.gz
11:46:23 (900967): run_atlas exited; CPU time 5438.567494
11:46:23 (900967): called boinc_finish(0)

</stderr_txt>
]]>

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