Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:30:54 (570349): wrapper (7.7.26015): starting
22:30:54 (570349): wrapper: running run_atlas (--nthreads 10)
[2026-01-10 22:30:54] Arguments: --nthreads 10
[2026-01-10 22:30:54] Threads: 10
[2026-01-10 22:30:54] Checking for CVMFS
[2026-01-10 22:30:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 22:30:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 22:30:55] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 22:30:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 22:30:55] 2.13.3.0 9377 23850 229632 155002 1 145 30849407 39288832 6373 16776704 0 21997635 99.720 38620052 35281 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 22:30:55] CVMFS is ok
[2026-01-10 22:30:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 22:30:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 22:30:55] Further information can be found at the LHC@home message board.
[2026-01-10 22:30:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 22:30:55] Checking for apptainer binary...
[2026-01-10 22:30:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 22:30:55] Running /usr/bin/apptainer --version
[2026-01-10 22:30:55] apptainer version 1.4.5-2.el9
[2026-01-10 22:30:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 22:30:55] c-211-26.aglt2.org
[2026-01-10 22:30:55] apptainer works
[2026-01-10 22:30:55] Set ATHENA_PROC_NUMBER=10
[2026-01-10 22:30:55] Set ATHENA_CORE_NUMBER=10
[2026-01-10 22:30:55] Starting ATLAS job with PandaID=6965940949
[2026-01-10 22:30:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 17:37:35]  *** The last 200 lines of the pilot log: ***
[2026-01-11 17:37:35] 2026-01-11 22:36:26,784 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 17:37:35] 2026-01-11 22:36:26,784 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 17:37:35] 2026-01-11 22:36:26,785 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 17:37:35] 2026-01-11 22:36:26,785 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 17:37:35] 2026-01-11 22:36:27,080 | INFO     | fitting pss+swap vs Time
[2026-01-11 17:37:35] 2026-01-11 22:36:27,167 | INFO     | sum of square deviations: 441503240371.29193
[2026-01-11 17:37:35] 2026-01-11 22:36:27,446 | INFO     | monitor loop #3433: job 0:6965940949 is in state 'finished'
[2026-01-11 17:37:35] 2026-01-11 22:36:27,446 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 17:37:35] 2026-01-11 22:36:27,624 | INFO     | sum of deviations: 109787282780.56139
[2026-01-11 17:37:35] 2026-01-11 22:36:27,624 | INFO     | mean x: 1768136576.2542222
[2026-01-11 17:37:35] 2026-01-11 22:36:27,624 | INFO     | mean y: 2605480.0924444445
[2026-01-11 17:37:35] 2026-01-11 22:36:27,625 | INFO     | intersect: -437071723.9267771
[2026-01-11 17:37:35] 2026-01-11 22:36:27,629 | INFO     | chi2: 2.9332692991456097
[2026-01-11 17:37:35] 2026-01-11 22:36:27,631 | INFO     | sum of square deviations: 435642990128.91016
[2026-01-11 17:37:35] 2026-01-11 22:36:28,356 | INFO     | sum of deviations: 257250550090.0806
[2026-01-11 17:37:35] 2026-01-11 22:36:28,357 | INFO     | mean x: 1768136423.7589285
[2026-01-11 17:37:35] 2026-01-11 22:36:28,357 | INFO     | mean y: 2609306.966964286
[2026-01-11 17:37:35] 2026-01-11 22:36:28,357 | INFO     | intersect: -1041488906.3698263
[2026-01-11 17:37:35] 2026-01-11 22:36:28,379 | INFO     | chi2: 1.535932002230048
[2026-01-11 17:37:35] 2026-01-11 22:36:28,379 | INFO     | current chi2=1.535932002230048 (change=47.637538678176334 %)
[2026-01-11 17:37:35] 2026-01-11 22:36:28,381 | INFO     | sum of square deviations: 429834629173.053
[2026-01-11 17:37:35] 2026-01-11 22:36:28,939 | INFO     | sum of deviations: 254188824965.88037
[2026-01-11 17:37:35] 2026-01-11 22:36:28,940 | INFO     | mean x: 1768136271.2609866
[2026-01-11 17:37:35] 2026-01-11 22:36:28,940 | INFO     | mean y: 2609226.581165919
[2026-01-11 17:37:35] 2026-01-11 22:36:28,940 | INFO     | intersect: -1043003319.8906004
[2026-01-11 17:37:35] 2026-01-11 22:36:28,942 | INFO     | chi2: 1.5359510976797413
[2026-01-11 17:37:35] 2026-01-11 22:36:28,942 | INFO     | current chi2=1.5359510976797413 (change=-0.001243248377241087 %)
[2026-01-11 17:37:35] 2026-01-11 22:36:28,942 | INFO     | right removable region: 1114
[2026-01-11 17:37:35] 2026-01-11 22:36:29,031 | INFO     | sum of square deviations: 435642197798.3917
[2026-01-11 17:37:35] 2026-01-11 22:36:29,711 | INFO     | sum of deviations: -69459018433.41437
[2026-01-11 17:37:35] 2026-01-11 22:36:29,711 | INFO     | mean x: 1768136728.7598214
[2026-01-11 17:37:35] 2026-01-11 22:36:29,711 | INFO     | mean y: 2610135.1285714284
[2026-01-11 17:37:35] 2026-01-11 22:36:29,712 | INFO     | intersect: 284522774.11622375
[2026-01-11 17:37:35] 2026-01-11 22:36:29,713 | INFO     | chi2: 1.570297063635939
[2026-01-11 17:37:35] 2026-01-11 22:36:29,713 | INFO     | current chi2=1.570297063635939 (change=46.46597691888268 %)
[2026-01-11 17:37:35] 2026-01-11 22:36:29,775 | INFO     | sum of square deviations: 429833249225.4202
[2026-01-11 17:37:35] 2026-01-11 22:36:30,204 | INFO     | sum of deviations: -100433528215.75703
[2026-01-11 17:37:35] 2026-01-11 22:36:30,307 | INFO     | mean x: 1768136881.2654707
[2026-01-11 17:37:35] 2026-01-11 22:36:30,307 | INFO     | mean y: 2610947.2322869957
[2026-01-11 17:37:35] 2026-01-11 22:36:30,307 | INFO     | intersect: 415748427.112925
[2026-01-11 17:37:35] 2026-01-11 22:36:30,309 | INFO     | chi2: 1.5325402968659487
[2026-01-11 17:37:35] 2026-01-11 22:36:30,309 | INFO     | current chi2=1.5325402968659487 (change=2.404434654075358 %)
[2026-01-11 17:37:35] 2026-01-11 22:36:30,309 | INFO     | left removable region: 20
[2026-01-11 17:37:35] 2026-01-11 22:36:30,316 | INFO     | monitor loop #3434: job 0:6965940949 is in state 'finished'
[2026-01-11 17:37:35] 2026-01-11 22:36:30,316 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 17:37:35] 2026-01-11 22:36:30,331 | INFO     | sum of square deviations: 406000841115.65656
[2026-01-11 17:37:35] 2026-01-11 22:36:30,447 | INFO     | sum of deviations: 89693768729.60608
[2026-01-11 17:37:35] 2026-01-11 22:36:30,448 | INFO     | mean x: 1768136850.7833638
[2026-01-11 17:37:35] 2026-01-11 22:36:30,448 | INFO     | mean y: 2613528.319012797
[2026-01-11 17:37:35] 2026-01-11 22:36:30,448 | INFO     | intersect: -388003538.7310518
[2026-01-11 17:37:35] 2026-01-11 22:36:30,450 | INFO     | chi2: 0.09955936406005012
[2026-01-11 17:37:35] 2026-01-11 22:36:30,450 | INFO     | current memory leak: 0.22 B/s (using 1094 data points, chi2=0.10)
[2026-01-11 17:37:35] 2026-01-11 22:36:30,455 | INFO     | could have reported an average CPU frequency of 2901 MHz (40 samples)
[2026-01-11 17:37:35] 2026-01-11 22:36:30,456 | INFO     | ..............................
[2026-01-11 17:37:35] 2026-01-11 22:36:30,456 | INFO     | . Timing measurements:
[2026-01-11 17:37:35] 2026-01-11 22:36:30,456 | INFO     | . get job = 0 s
[2026-01-11 17:37:35] 2026-01-11 22:36:30,456 | INFO     | . initial setup = 2 s
[2026-01-11 17:37:35] 2026-01-11 22:36:30,456 | INFO     | . payload setup = 5 s
[2026-01-11 17:37:35] 2026-01-11 22:36:30,457 | INFO     | . stage-in = 0 s
[2026-01-11 17:37:35] 2026-01-11 22:36:30,457 | INFO     | . payload execution = 68625 s
[2026-01-11 17:37:35] 2026-01-11 22:36:30,457 | INFO     | . stage-out = 12 s
[2026-01-11 17:37:35] 2026-01-11 22:36:30,457 | INFO     | . log creation = 2 s
[2026-01-11 17:37:35] 2026-01-11 22:36:30,457 | INFO     | ..............................
[2026-01-11 17:37:35] 2026-01-11 22:36:30,993 | INFO     | 
[2026-01-11 17:37:35] 2026-01-11 22:36:30,993 | INFO     | job summary report
[2026-01-11 17:37:35] 2026-01-11 22:36:30,993 | INFO     | --------------------------------------------------
[2026-01-11 17:37:35] 2026-01-11 22:36:30,993 | INFO     | PanDA job id: 6965940949
[2026-01-11 17:37:35] 2026-01-11 22:36:30,993 | INFO     | task id: 47898826
[2026-01-11 17:37:35] 2026-01-11 22:36:30,994 | INFO     | errors: (none)
[2026-01-11 17:37:35] 2026-01-11 22:36:30,994 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 17:37:35] 2026-01-11 22:36:30,994 | INFO     | pilot state: finished 
[2026-01-11 17:37:35] 2026-01-11 22:36:30,994 | INFO     | transexitcode: 0
[2026-01-11 17:37:35] 2026-01-11 22:36:30,994 | INFO     | exeerrorcode: 0
[2026-01-11 17:37:35] 2026-01-11 22:36:30,994 | INFO     | exeerrordiag: 
[2026-01-11 17:37:35] 2026-01-11 22:36:30,994 | INFO     | exitcode: 0
[2026-01-11 17:37:35] 2026-01-11 22:36:30,995 | INFO     | exitmsg: OK
[2026-01-11 17:37:35] 2026-01-11 22:36:30,995 | INFO     | cpuconsumptiontime: 111946 s
[2026-01-11 17:37:35] 2026-01-11 22:36:30,996 | INFO     | nevents: 400
[2026-01-11 17:37:35] 2026-01-11 22:36:30,996 | INFO     | neventsw: 0
[2026-01-11 17:37:35] 2026-01-11 22:36:30,996 | INFO     | pid: 594855
[2026-01-11 17:37:35] 2026-01-11 22:36:30,996 | INFO     | pgrp: 594855
[2026-01-11 17:37:35] 2026-01-11 22:36:30,996 | INFO     | corecount: 10
[2026-01-11 17:37:35] 2026-01-11 22:36:30,996 | INFO     | event service: False
[2026-01-11 17:37:35] 2026-01-11 22:36:30,999 | INFO     | sizes: {0: 2283690, 1: 2283945, 2: 2283945, 5: 2284235, 12: 2284291, 68637: 2338691, 68639: 2338818, 68655: 2347928, 68708: 2348066}
[2026-01-11 17:37:35] 2026-01-11 22:36:30,999 | INFO     | --------------------------------------------------
[2026-01-11 17:37:35] 2026-01-11 22:36:30,999 | INFO     | 
[2026-01-11 17:37:35] 2026-01-11 22:36:30,999 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-11 17:37:35] 2026-01-11 22:36:31,193 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 17:37:35] 2026-01-11 22:36:31,194 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 17:37:35] 2026-01-11 22:36:31,194 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 17:37:35] 2026-01-11 22:36:31,194 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 17:37:35] 2026-01-11 22:36:31,194 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 17:37:35] 2026-01-11 22:36:31,195 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 17:37:35] 2026-01-11 22:36:31,195 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 17:37:35] 2026-01-11 22:36:31,195 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 17:37:35] 2026-01-11 22:36:31,195 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 17:37:35] 2026-01-11 22:36:31,195 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 17:37:35] 2026-01-11 22:36:31,195 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 17:37:35] 2026-01-11 22:36:31,196 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 17:37:35] 2026-01-11 22:36:31,196 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 17:37:35] 2026-01-11 22:36:31,196 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 17:37:35] 2026-01-11 22:36:31,196 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 17:37:35] 2026-01-11 22:36:31,196 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 17:37:35] 2026-01-11 22:36:31,196 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 17:37:35] 2026-01-11 22:36:31,204 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 17:37:35] 2026-01-11 22:36:31,204 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 17:37:35] 2026-01-11 22:36:31,204 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 17:37:35] 2026-01-11 22:36:31,205 | INFO     | job 6965940949 has completed (purged errors)
[2026-01-11 17:37:35] 2026-01-11 22:36:31,205 | INFO     | overall cleanup function is called
[2026-01-11 17:37:35] 2026-01-11 22:36:31,919 | INFO     | PID=575922 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-11 17:37:35] 2026-01-11 22:36:31,919 | INFO     | .. there are 13 such processes running
[2026-01-11 17:37:35] 2026-01-11 22:36:32,215 | INFO     | --- collectZombieJob: --- 10, [594855]
[2026-01-11 17:37:35] 2026-01-11 22:36:32,215 | INFO     | zombie collector waiting for pid 594855
[2026-01-11 17:37:35] 2026-01-11 22:36:32,215 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 17:37:35] 2026-01-11 22:36:32,215 | INFO     | collected zombie processes
[2026-01-11 17:37:35] 2026-01-11 22:36:32,216 | INFO     | will attempt to kill all subprocesses of pid=594855
[2026-01-11 17:37:35] 2026-01-11 22:36:34,260 | INFO     | process IDs to be killed: [594855] (in reverse order)
[2026-01-11 17:37:35] 2026-01-11 22:36:36,041 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 17:37:35] 2026-01-11 22:36:36,042 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 17:37:35] 2026-01-11 22:36:36,086 | INFO     | did not find any defunct processes belonging to 594855
[2026-01-11 17:37:35] 2026-01-11 22:36:36,107 | INFO     | did not find any defunct processes belonging to 594855
[2026-01-11 17:37:35] 2026-01-11 22:36:36,108 | INFO     | ready for new job
[2026-01-11 17:37:35] 2026-01-11 22:36:36,108 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 17:37:35] 2026-01-11 22:36:36,125 | INFO     | ***************************************
[2026-01-11 17:37:35] 2026-01-11 22:36:36,125 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 17:37:35] 2026-01-11 22:36:36,125 | INFO     | ***************************************
[2026-01-11 17:37:35] 2026-01-11 22:36:36,126 | INFO     | 
[2026-01-11 17:37:35] 2026-01-11 22:36:36,144 | INFO     | architecture information:
[2026-01-11 17:37:35] 2026-01-11 22:36:36,152 | INFO     | executing command: cat /etc/os-release
[2026-01-11 17:37:35] 2026-01-11 22:36:36,336 | INFO     | cat /etc/os-release:
[2026-01-11 17:37:35] NAME="CentOS Linux"
[2026-01-11 17:37:35] VERSION="7 (Core)"
[2026-01-11 17:37:35] ID="centos"
[2026-01-11 17:37:35] ID_LIKE="rhel fedora"
[2026-01-11 17:37:35] VERSION_ID="7"
[2026-01-11 17:37:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 17:37:35] ANSI_COLOR="0;31"
[2026-01-11 17:37:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 17:37:35] HOME_URL="https://www.centos.org/"
[2026-01-11 17:37:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 17:37:35] 
[2026-01-11 17:37:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 17:37:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 17:37:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 17:37:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 17:37:35] 
[2026-01-11 17:37:35] 2026-01-11 22:36:36,336 | INFO     | ***************************************
[2026-01-11 17:37:35] 2026-01-11 22:36:36,840 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-11 17:37:35] 2026-01-11 22:36:37,018 | INFO     | sufficient remaining disk space (51672776704 B)
[2026-01-11 17:37:35] 2026-01-11 22:36:37,019 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 17:37:35] 2026-01-11 22:36:37,019 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 17:37:35] 2026-01-11 22:36:37,019 | INFO     | update_server=False
[2026-01-11 17:37:35] 2026-01-11 22:36:37,019 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 17:37:35] 2026-01-11 22:36:37,020 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 17:37:35] 2026-01-11 22:36:37,020 | INFO     | aborting loop
[2026-01-11 17:37:35] 2026-01-11 22:36:37,043 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 17:37:35] 2026-01-11 22:36:37,043 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 17:37:35] 2026-01-11 22:36:37,435 | INFO     | all data control threads have been joined
[2026-01-11 17:37:35] 2026-01-11 22:36:37,662 | INFO     | all payload control threads have been joined
[2026-01-11 17:37:35] 2026-01-11 22:36:38,006 | INFO     | all job control threads have been joined
[2026-01-11 17:37:35] 2026-01-11 22:36:38,025 | INFO     | [job] retrieve thread has finished
[2026-01-11 17:37:35] 2026-01-11 22:36:38,048 | INFO     | [job] job monitor thread has finished
[2026-01-11 17:37:35] 2026-01-11 22:36:38,049 | INFO     | [job] queue monitor thread has finished
[2026-01-11 17:37:35] 2026-01-11 22:36:38,487 | INFO     | [data] control thread has finished
[2026-01-11 17:37:35] 2026-01-11 22:36:38,493 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 17:37:35] 2026-01-11 22:36:38,667 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 17:37:35] 2026-01-11 22:36:38,689 | INFO     | [payload] control thread has finished
[2026-01-11 17:37:35] 2026-01-11 22:36:39,026 | INFO     | [job] control thread has finished
[2026-01-11 17:37:35] 2026-01-11 22:36:39,030 | INFO     | [payload] failed_post thread has finished
[2026-01-11 17:37:35] 2026-01-11 22:36:39,031 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 17:37:35] 2026-01-11 22:36:39,050 | INFO     | [data] copytool_out thread has finished
[2026-01-11 17:37:35] 2026-01-11 22:36:39,234 | INFO     | [job] validate thread has finished
[2026-01-11 17:37:35] 2026-01-11 22:36:39,345 | INFO     | [payload] validate_post thread has finished
[2026-01-11 17:37:35] 2026-01-11 22:36:39,436 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 17:37:35] 2026-01-11 22:36:39,443 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 17:37:35] 2026-01-11 22:36:39,480 | INFO     | [data] copytool_in thread has finished
[2026-01-11 17:37:35] 2026-01-11 22:36:43,096 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 17:37:35] 2026-01-11 22:37:04,985 | INFO     | PID=575922 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-11 17:37:35] 2026-01-11 22:37:04,985 | INFO     | .. there are 13 such processes running
[2026-01-11 17:37:35] 2026-01-11 22:37:04,985 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 17:37:35] 2026-01-11 22:37:04,985 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 17:37:35] 2026-01-11 22:37:04,985 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 17:37:35] 2026-01-11 22:37:27,247 | INFO     | [monitor] cgroup control has ended
[2026-01-11 17:37:35] 2026-01-11 22:37:27,382 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140570262587200)>', '<ExcThread(monitor, started 140569909126912)>']
[2026-01-11 17:37:35] 2026-01-11 22:37:28,265 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 17:37:35] 2026-01-11 22:37:28,265 | INFO     | [monitor] control thread has ended
[2026-01-11 17:37:35] 2026-01-11 22:37:32,408 | INFO     | all workflow threads have been joined
[2026-01-11 17:37:35] 2026-01-11 22:37:32,408 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 17:37:35] 2026-01-11 22:37:32,437 | INFO     | traces error code: 0
[2026-01-11 17:37:35] 2026-01-11 22:37:32,437 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 17:37:35] 2026-01-11 22:37:34,216 [wrapper] ==== pilot stdout END ====
[2026-01-11 17:37:35] 2026-01-11 22:37:34,286 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 17:37:35] 2026-01-11 22:37:34,329 [wrapper] pilotpid: 575922
[2026-01-11 17:37:35] 2026-01-11 22:37:34,374 [wrapper] Pilot exit status: 0
[2026-01-11 17:37:35] 2026-01-11 22:37:34,526 [wrapper] pandaids: 6965940949
[2026-01-11 17:37:35] 2026-01-11 22:37:34,709 [wrapper] cleanup supervisor_pilot  366113 575923
[2026-01-11 17:37:35] 2026-01-11 22:37:34,755 [wrapper] Test setup, not cleaning
[2026-01-11 17:37:35] 2026-01-11 22:37:34,802 [wrapper] apfmon messages muted
[2026-01-11 17:37:35] 2026-01-11 22:37:34,848 [wrapper] ==== wrapper stdout END ====
[2026-01-11 17:37:35] 2026-01-11 22:37:34,865 [wrapper] ==== wrapper stderr END ====
[2026-01-11 17:37:35]  *** Error codes and diagnostics ***
[2026-01-11 17:37:35]     "exeErrorCode": 0,
[2026-01-11 17:37:35]     "exeErrorDiag": "",
[2026-01-11 17:37:35]     "pilotErrorCode": 0,
[2026-01-11 17:37:35]     "pilotErrorDiag": "",
[2026-01-11 17:37:35]  *** Listing of results directory ***
[2026-01-11 17:37:35] total 457056
[2026-01-11 17:37:35] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 22:29 pilot3.tar.gz
[2026-01-11 17:37:35] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 22:29 queuedata.json
[2026-01-11 17:37:35] -rwx------. 1 boincer umatlas     36322 Jan 10 22:30 runpilot2-wrapper.sh
[2026-01-11 17:37:35] -rw-r--r--. 1 boincer umatlas       100 Jan 10 22:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 17:37:35] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 22:30 run_atlas
[2026-01-11 17:37:35] -rw-r--r--. 1 boincer umatlas       105 Jan 10 22:30 job.xml
[2026-01-11 17:37:35] -rw-r--r--. 2 boincer umatlas 227583420 Jan 10 22:30 EVNT.47898824._000906.pool.root.1
[2026-01-11 17:37:35] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 22:30 start_atlas.sh
[2026-01-11 17:37:35] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 22:30 shared
[2026-01-11 17:37:35] -rw-r--r--. 2 boincer umatlas    592405 Jan 10 22:30 input.tar.gz
[2026-01-11 17:37:35] -rw-r--r--. 1 boincer umatlas         0 Jan 10 22:30 boinc_lockfile
[2026-01-11 17:37:35] -rw-r--r--. 1 boincer umatlas      2517 Jan 10 22:30 pandaJob.out
[2026-01-11 17:37:35] -rw-------. 1 boincer umatlas        57 Jan 10 22:30 setup.sh.local
[2026-01-11 17:37:35] -rw-------. 1 boincer umatlas    989548 Jan 10 22:31 agis_schedconf.cvmfs.json
[2026-01-11 17:37:35] drwx------. 5 boincer umatlas      4096 Jan 10 22:31 pilot3
[2026-01-11 17:37:35] -rw-r--r--. 1 boincer umatlas      6526 Jan 11 17:28 init_data.xml
[2026-01-11 17:37:35] -rw-------. 1 boincer umatlas 219106137 Jan 11 17:32 HITS.47898826._040756.pool.root.1
[2026-01-11 17:37:35] -rw-r--r--. 1 boincer umatlas       532 Jan 11 17:32 boinc_task_state.xml
[2026-01-11 17:37:35] -rw-------. 1 boincer umatlas      1057 Jan 11 17:35 memory_monitor_summary.json
[2026-01-11 17:37:35] -rw-------. 1 boincer umatlas   1516240 Jan 11 17:35 agis_ddmendpoints.agis.ALL.json
[2026-01-11 17:37:35] -rw-------. 1 boincer umatlas   1110398 Jan 11 17:35 log.47898826._040756.job.log.tgz.1
[2026-01-11 17:37:35] -rw-------. 1 boincer umatlas        95 Jan 11 17:36 pilot_heartbeat.json
[2026-01-11 17:37:35] -rw-------. 1 boincer umatlas      7830 Jan 11 17:36 heartbeat.json
[2026-01-11 17:37:35] -rw-r--r--. 1 boincer umatlas      8192 Jan 11 17:37 boinc_mmap_file
[2026-01-11 17:37:35] -rw-r--r--. 1 boincer umatlas        29 Jan 11 17:37 wrapper_checkpoint.txt
[2026-01-11 17:37:35] -rw-------. 1 boincer umatlas      4823 Jan 11 17:37 pilotlog.txt
[2026-01-11 17:37:35] -rw-------. 1 boincer umatlas   7599449 Jan 11 17:37 log.47898826._040756.job.log.1
[2026-01-11 17:37:35] -rw-------. 1 boincer umatlas       357 Jan 11 17:37 output.list
[2026-01-11 17:37:35] -rw-r--r--. 1 boincer umatlas       620 Jan 11 17:37 runtime_log
[2026-01-11 17:37:35] -rw-------. 1 boincer umatlas   8724480 Jan 11 17:37 result.tar.gz
[2026-01-11 17:37:35] -rw-r--r--. 1 boincer umatlas      9345 Jan 11 17:37 runtime_log.err
[2026-01-11 17:37:35] -rw-------. 1 boincer umatlas       659 Jan 11 17:37 9r1NDmjK1y8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmaymKDmvj4fZn.diag
[2026-01-11 17:37:35] -rw-r--r--. 1 boincer umatlas     21295 Jan 11 17:37 stderr.txt
[2026-01-11 17:37:36] HITS file was successfully produced:
[2026-01-11 17:37:36] -rw-------. 1 boincer umatlas 219106137 Jan 11 17:32 shared/HITS.pool.root.1
[2026-01-11 17:37:36]  *** Contents of shared directory: ***
[2026-01-11 17:37:36] total 445348
[2026-01-11 17:37:36] -rw-r--r--. 2 boincer umatlas 227583420 Jan 10 22:30 ATLAS.root_0
[2026-01-11 17:37:36] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 22:30 start_atlas.sh
[2026-01-11 17:37:36] -rw-r--r--. 2 boincer umatlas    592405 Jan 10 22:30 input.tar.gz
[2026-01-11 17:37:36] -rw-------. 1 boincer umatlas 219106137 Jan 11 17:32 HITS.pool.root.1
[2026-01-11 17:37:36] -rw-------. 1 boincer umatlas   8724480 Jan 11 17:37 result.tar.gz
17:37:37 (570349): run_atlas exited; CPU time 114695.436045
17:37:37 (570349): called boinc_finish(0)

</stderr_txt>
]]>

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