Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:30:34 (435827): wrapper (7.7.26015): starting
22:30:34 (435827): wrapper: running run_atlas (--nthreads 9)
[2026-01-10 22:30:34] Arguments: --nthreads 9
[2026-01-10 22:30:34] Threads: 9
[2026-01-10 22:30:34] Checking for CVMFS
[2026-01-10 22:30:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 22:30:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 22:30:34] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 22:30:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 22:30:34] 2.13.3.0 313591 19248 88628 155002 3 1 29224877 37030912 0 16776704 0 6654475 99.988 608355 56235 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 22:30:34] CVMFS is ok
[2026-01-10 22:30:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 22:30:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 22:30:34] Further information can be found at the LHC@home message board.
[2026-01-10 22:30:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 22:30:34] Checking for apptainer binary...
[2026-01-10 22:30:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 22:30:34] Running /usr/bin/apptainer --version
[2026-01-10 22:30:34] apptainer version 1.4.5-2.el9
[2026-01-10 22:30:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 22:30:34] c-205-37.aglt2.org
[2026-01-10 22:30:34] apptainer works
[2026-01-10 22:30:34] Set ATHENA_PROC_NUMBER=9
[2026-01-10 22:30:34] Set ATHENA_CORE_NUMBER=9
[2026-01-10 22:30:34] Starting ATLAS job with PandaID=6965940971
[2026-01-10 22:30:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 22:57:50]  *** The last 200 lines of the pilot log: ***
[2026-01-10 22:57:50]  guid=2a188a22-9367-4cb8-9a1d-89b07944684b
[2026-01-10 22:57:50]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-10 22:57:50]  is_altstaged=None
[2026-01-10 22:57:50]  is_tar=False
[2026-01-10 22:57:50]  lfn=log.47962010._002951.job.log.tgz.1
[2026-01-10 22:57:50]  mtime=0
[2026-01-10 22:57:50]  protocol_id=None
[2026-01-10 22:57:50]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-10 22:57:50]  replicas=None
[2026-01-10 22:57:50]  scope=mc16_13TeV
[2026-01-10 22:57:50]  status=None
[2026-01-10 22:57:50]  status_code=0
[2026-01-10 22:57:50]  storage_token=
[2026-01-10 22:57:50]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6965940971/log.47962010._002951.job.log.tgz.1
[2026-01-10 22:57:50]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/54/a3/log.47962010._002951.job.log.tgz.1
[2026-01-10 22:57:50]  workdir=None
[2026-01-10 22:57:50] ]
[2026-01-10 22:57:50] 2026-01-11 03:57:07,240 | INFO     | transferring file log.47962010._002951.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6965940971/log.47962010._002951.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-10 22:57:50] 2026-01-11 03:57:07,240 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6965940971/log.47962010._002951.job.log.tgz.1 /tmp/boinchome/slots/0/log.47962010._002951.job
[2026-01-10 22:57:50] 2026-01-11 03:57:07,250 | INFO     | adding to output.list: log.47962010._002951.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/54/a3/log.47962010._002951.job.log.tgz.
[2026-01-10 22:57:50] 2026-01-11 03:57:07,251 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 22:57:50] 2026-01-11 03:57:07,251 | INFO     | summary of transferred files:
[2026-01-10 22:57:50] 2026-01-11 03:57:07,251 | INFO     |  -- lfn=log.47962010._002951.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 22:57:50] 2026-01-11 03:57:07,251 | INFO     | stage-out finished correctly
[2026-01-10 22:57:50] 2026-01-11 03:57:07,750 | INFO     | monitor loop #125: job 0:6965940971 is in state 'finished'
[2026-01-10 22:57:50] 2026-01-11 03:57:07,750 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 22:57:50] 2026-01-11 03:57:08,619 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 22:57:50] 2026-01-11 03:57:09,144 | INFO     | time since job start (1588s) is within the limit (349056.0s)
[2026-01-10 22:57:50] 2026-01-11 03:57:10,008 | INFO     | job 6965940971 has state=finished
[2026-01-10 22:57:50] 2026-01-11 03:57:10,008 | INFO     | preparing for final server update for job 6965940971 in state='finished'
[2026-01-10 22:57:50] 2026-01-11 03:57:10,008 | INFO     | this job has now completed (state=finished)
[2026-01-10 22:57:50] 2026-01-11 03:57:10,008 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 22:57:50] 2026-01-11 03:57:10,008 | INFO     | log transfer has been attempted: DONE
[2026-01-10 22:57:50] 2026-01-11 03:57:10,008 | INFO     | job 6965940971 has finished - writing final server update
[2026-01-10 22:57:50] 2026-01-11 03:57:10,009 | INFO     | total number of processed events: 50 (read)
[2026-01-10 22:57:50] 2026-01-11 03:57:10,015 | INFO     | executing command: lscpu
[2026-01-10 22:57:50] 2026-01-11 03:57:10,036 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 22:57:50] 2026-01-11 03:57:10,252 | INFO     | monitor loop #126: job 0:6965940971 is in state 'finished'
[2026-01-10 22:57:50] 2026-01-11 03:57:10,252 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 22:57:50] 2026-01-11 03:57:11,149 | INFO     | time since job start (1590s) is within the limit (349056.0s)
[2026-01-10 22:57:50] 2026-01-11 03:57:12,203 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 22:57:50] 2026-01-11 03:57:12,207 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 2787.52659375
[2026-01-10 22:57:50] 2026-01-11 03:57:12,210 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6965940971/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 22:57:50] 2026-01-11 03:57:12,211 | INFO     | extracted standard info from prmon json
[2026-01-10 22:57:50] 2026-01-11 03:57:12,211 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 22:57:50] 2026-01-11 03:57:12,211 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 22:57:50] 2026-01-11 03:57:12,212 | INFO     | fitting pss+swap vs Time
[2026-01-10 22:57:50] 2026-01-11 03:57:12,212 | INFO     | sum of square deviations: 2120970.0
[2026-01-10 22:57:50] 2026-01-11 03:57:12,213 | INFO     | sum of deviations: 114565808.00000003
[2026-01-10 22:57:50] 2026-01-11 03:57:12,213 | INFO     | mean x: 1768103115.0
[2026-01-10 22:57:50] 2026-01-11 03:57:12,213 | INFO     | mean y: 2897787.052631579
[2026-01-10 22:57:50] 2026-01-11 03:57:12,213 | INFO     | intersect: -95502536989.15448
[2026-01-10 22:57:50] 2026-01-11 03:57:12,213 | INFO     | chi2: 0.029286679206142818
[2026-01-10 22:57:50] 2026-01-11 03:57:12,213 | INFO     | current memory leak: 54.02 B/s (using 19 data points, chi2=0.03)
[2026-01-10 22:57:50] 2026-01-11 03:57:12,214 | INFO     | could have reported an average CPU frequency of 2632 MHz (4 samples)
[2026-01-10 22:57:50] 2026-01-11 03:57:12,214 | INFO     | ..............................
[2026-01-10 22:57:50] 2026-01-11 03:57:12,214 | INFO     | . Timing measurements:
[2026-01-10 22:57:50] 2026-01-11 03:57:12,214 | INFO     | . get job = 0 s
[2026-01-10 22:57:50] 2026-01-11 03:57:12,214 | INFO     | . initial setup = 2 s
[2026-01-10 22:57:50] 2026-01-11 03:57:12,214 | INFO     | . payload setup = 3 s
[2026-01-10 22:57:50] 2026-01-11 03:57:12,214 | INFO     | . stage-in = 0 s
[2026-01-10 22:57:50] 2026-01-11 03:57:12,214 | INFO     | . payload execution = 1564 s
[2026-01-10 22:57:50] 2026-01-11 03:57:12,214 | INFO     | . stage-out = 0 s
[2026-01-10 22:57:50] 2026-01-11 03:57:12,214 | INFO     | . log creation = 0 s
[2026-01-10 22:57:50] 2026-01-11 03:57:12,214 | INFO     | ..............................
[2026-01-10 22:57:50] 2026-01-11 03:57:12,267 | INFO     | 
[2026-01-10 22:57:50] 2026-01-11 03:57:12,267 | INFO     | job summary report
[2026-01-10 22:57:50] 2026-01-11 03:57:12,267 | INFO     | --------------------------------------------------
[2026-01-10 22:57:50] 2026-01-11 03:57:12,267 | INFO     | PanDA job id: 6965940971
[2026-01-10 22:57:50] 2026-01-11 03:57:12,268 | INFO     | task id: 47962010
[2026-01-10 22:57:50] 2026-01-11 03:57:12,268 | INFO     | errors: (none)
[2026-01-10 22:57:50] 2026-01-11 03:57:12,268 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 22:57:50] 2026-01-11 03:57:12,268 | INFO     | pilot state: finished 
[2026-01-10 22:57:50] 2026-01-11 03:57:12,268 | INFO     | transexitcode: 0
[2026-01-10 22:57:50] 2026-01-11 03:57:12,268 | INFO     | exeerrorcode: 0
[2026-01-10 22:57:50] 2026-01-11 03:57:12,268 | INFO     | exeerrordiag: 
[2026-01-10 22:57:50] 2026-01-11 03:57:12,268 | INFO     | exitcode: 0
[2026-01-10 22:57:50] 2026-01-11 03:57:12,268 | INFO     | exitmsg: OK
[2026-01-10 22:57:50] 2026-01-11 03:57:12,268 | INFO     | cpuconsumptiontime: 11688 s
[2026-01-10 22:57:50] 2026-01-11 03:57:12,268 | INFO     | nevents: 50
[2026-01-10 22:57:50] 2026-01-11 03:57:12,268 | INFO     | neventsw: 0
[2026-01-10 22:57:50] 2026-01-11 03:57:12,268 | INFO     | pid: 445999
[2026-01-10 22:57:50] 2026-01-11 03:57:12,268 | INFO     | pgrp: 445999
[2026-01-10 22:57:50] 2026-01-11 03:57:12,268 | INFO     | corecount: 9
[2026-01-10 22:57:50] 2026-01-11 03:57:12,268 | INFO     | event service: False
[2026-01-10 22:57:50] 2026-01-11 03:57:12,269 | INFO     | sizes: {0: 2284568, 2: 2284830, 10: 2284858, 1570: 2310445, 1572: 2319439, 1573: 2319495, 1577: 2319869}
[2026-01-10 22:57:50] 2026-01-11 03:57:12,269 | INFO     | --------------------------------------------------
[2026-01-10 22:57:50] 2026-01-11 03:57:12,269 | INFO     | 
[2026-01-10 22:57:50] 2026-01-11 03:57:12,269 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-10 22:57:50] 2026-01-11 03:57:12,280 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 22:57:50] 2026-01-11 03:57:12,280 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 22:57:50] 2026-01-11 03:57:12,280 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 22:57:50] 2026-01-11 03:57:12,280 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 22:57:50] 2026-01-11 03:57:12,280 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 22:57:50] 2026-01-11 03:57:12,280 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 22:57:50] 2026-01-11 03:57:12,280 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 22:57:50] 2026-01-11 03:57:12,280 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 22:57:50] 2026-01-11 03:57:12,280 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 22:57:50] 2026-01-11 03:57:12,280 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 22:57:50] 2026-01-11 03:57:12,280 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 22:57:50] 2026-01-11 03:57:12,280 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 22:57:50] 2026-01-11 03:57:12,281 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 22:57:50] 2026-01-11 03:57:12,281 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 22:57:50] 2026-01-11 03:57:12,281 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 22:57:50] 2026-01-11 03:57:12,281 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 22:57:50] 2026-01-11 03:57:12,281 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 22:57:50] 2026-01-11 03:57:12,281 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 22:57:50] 2026-01-11 03:57:12,281 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 22:57:50] 2026-01-11 03:57:12,281 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 22:57:50] 2026-01-11 03:57:12,281 | INFO     | job 6965940971 has completed (purged errors)
[2026-01-10 22:57:50] 2026-01-11 03:57:12,281 | INFO     | overall cleanup function is called
[2026-01-10 22:57:50] 2026-01-11 03:57:13,292 | INFO     | --- collectZombieJob: --- 10, [445999]
[2026-01-10 22:57:50] 2026-01-11 03:57:13,293 | INFO     | zombie collector waiting for pid 445999
[2026-01-10 22:57:50] 2026-01-11 03:57:13,293 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 22:57:50] 2026-01-11 03:57:13,293 | INFO     | collected zombie processes
[2026-01-10 22:57:50] 2026-01-11 03:57:13,293 | INFO     | will attempt to kill all subprocesses of pid=445999
[2026-01-10 22:57:50] 2026-01-11 03:57:13,400 | INFO     | process IDs to be killed: [445999] (in reverse order)
[2026-01-10 22:57:50] 2026-01-11 03:57:13,430 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 22:57:50] 2026-01-11 03:57:13,431 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 22:57:50] 2026-01-11 03:57:13,434 | INFO     | did not find any defunct processes belonging to 445999
[2026-01-10 22:57:50] 2026-01-11 03:57:13,436 | INFO     | did not find any defunct processes belonging to 445999
[2026-01-10 22:57:50] 2026-01-11 03:57:13,436 | INFO     | ready for new job
[2026-01-10 22:57:50] 2026-01-11 03:57:13,436 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 22:57:50] 2026-01-11 03:57:13,437 | INFO     | ***************************************
[2026-01-10 22:57:50] 2026-01-11 03:57:13,437 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 22:57:50] 2026-01-11 03:57:13,437 | INFO     | ***************************************
[2026-01-10 22:57:50] 2026-01-11 03:57:13,438 | INFO     | 
[2026-01-10 22:57:50] 2026-01-11 03:57:13,439 | INFO     | architecture information:
[2026-01-10 22:57:50] 2026-01-11 03:57:13,439 | INFO     | executing command: cat /etc/os-release
[2026-01-10 22:57:50] 2026-01-11 03:57:13,446 | INFO     | cat /etc/os-release:
[2026-01-10 22:57:50] NAME="CentOS Linux"
[2026-01-10 22:57:50] VERSION="7 (Core)"
[2026-01-10 22:57:50] ID="centos"
[2026-01-10 22:57:50] ID_LIKE="rhel fedora"
[2026-01-10 22:57:50] VERSION_ID="7"
[2026-01-10 22:57:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 22:57:50] ANSI_COLOR="0;31"
[2026-01-10 22:57:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 22:57:50] HOME_URL="https://www.centos.org/"
[2026-01-10 22:57:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 22:57:50] 
[2026-01-10 22:57:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 22:57:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 22:57:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 22:57:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 22:57:50] 
[2026-01-10 22:57:50] 2026-01-11 03:57:13,446 | INFO     | ***************************************
[2026-01-10 22:57:50] 2026-01-11 03:57:13,949 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-10 22:57:50] 2026-01-11 03:57:13,958 | INFO     | sufficient remaining disk space (40746614784 B)
[2026-01-10 22:57:50] 2026-01-11 03:57:13,958 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 22:57:50] 2026-01-11 03:57:13,958 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 22:57:50] 2026-01-11 03:57:13,958 | INFO     | update_server=False
[2026-01-10 22:57:50] 2026-01-11 03:57:13,958 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 22:57:50] 2026-01-11 03:57:13,958 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 22:57:50] 2026-01-11 03:57:13,959 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 22:57:50] 2026-01-11 03:57:13,959 | INFO     | aborting loop
[2026-01-10 22:57:50] 2026-01-11 03:57:14,059 | INFO     | all payload control threads have been joined
[2026-01-10 22:57:50] 2026-01-11 03:57:14,613 | INFO     | all data control threads have been joined
[2026-01-10 22:57:50] 2026-01-11 03:57:14,675 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 22:57:50] 2026-01-11 03:57:14,964 | INFO     | [job] retrieve thread has finished
[2026-01-10 22:57:50] 2026-01-11 03:57:14,964 | INFO     | [job] queue monitor thread has finished
[2026-01-10 22:57:50] 2026-01-11 03:57:14,964 | INFO     | [job] job monitor thread has finished
[2026-01-10 22:57:50] 2026-01-11 03:57:15,064 | INFO     | [payload] control thread has finished
[2026-01-10 22:57:50] 2026-01-11 03:57:15,276 | INFO     | all job control threads have been joined
[2026-01-10 22:57:50] 2026-01-11 03:57:15,314 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 22:57:50] 2026-01-11 03:57:15,430 | INFO     | [job] validate thread has finished
[2026-01-10 22:57:50] 2026-01-11 03:57:15,572 | INFO     | [payload] failed_post thread has finished
[2026-01-10 22:57:50] 2026-01-11 03:57:15,574 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 22:57:50] 2026-01-11 03:57:15,618 | INFO     | [data] control thread has finished
[2026-01-10 22:57:50] 2026-01-11 03:57:15,662 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 22:57:50] 2026-01-11 03:57:15,663 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 22:57:50] 2026-01-11 03:57:16,089 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 22:57:50] 2026-01-11 03:57:16,229 | INFO     | [payload] validate_post thread has finished
[2026-01-10 22:57:50] 2026-01-11 03:57:16,282 | INFO     | [job] control thread has finished
[2026-01-10 22:57:50] 2026-01-11 03:57:16,432 | INFO     | [data] copytool_in thread has finished
[2026-01-10 22:57:50] 2026-01-11 03:57:17,319 | INFO     | [data] copytool_out thread has finished
[2026-01-10 22:57:50] 2026-01-11 03:57:18,680 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 22:57:50] 2026-01-11 03:57:43,641 | INFO     | [monitor] cgroup control has ended
[2026-01-10 22:57:50] 2026-01-11 03:57:44,353 | INFO     | PID=439545 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 22:57:50] 2026-01-11 03:57:44,353 | INFO     | .. there are 2 such processes running
[2026-01-10 22:57:50] 2026-01-11 03:57:44,353 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 22:57:50] 2026-01-11 03:57:44,354 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 22:57:50] 2026-01-11 03:57:44,354 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 22:57:50] 2026-01-11 03:57:45,270 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140470045550400)>', '<ExcThread(monitor, started 140469547804416)>']
[2026-01-10 22:57:50] 2026-01-11 03:57:45,359 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 22:57:50] 2026-01-11 03:57:45,359 | INFO     | [monitor] control thread has ended
[2026-01-10 22:57:50] 2026-01-11 03:57:50,294 | INFO     | all workflow threads have been joined
[2026-01-10 22:57:50] 2026-01-11 03:57:50,294 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 22:57:50] 2026-01-11 03:57:50,294 | INFO     | traces error code: 0
[2026-01-10 22:57:50] 2026-01-11 03:57:50,295 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 22:57:50] 2026-01-11 03:57:50,373 [wrapper] ==== pilot stdout END ====
[2026-01-10 22:57:50] 2026-01-11 03:57:50,375 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 22:57:50] 2026-01-11 03:57:50,377 [wrapper] pilotpid: 439545
[2026-01-10 22:57:50] 2026-01-11 03:57:50,378 [wrapper] Pilot exit status: 0
[2026-01-10 22:57:50] 2026-01-11 03:57:50,384 [wrapper] pandaids: 6965940971
[2026-01-10 22:57:50] 2026-01-11 03:57:50,404 [wrapper] cleanup supervisor_pilot  475273 439546
[2026-01-10 22:57:50] 2026-01-11 03:57:50,406 [wrapper] Test setup, not cleaning
[2026-01-10 22:57:50] 2026-01-11 03:57:50,408 [wrapper] apfmon messages muted
[2026-01-10 22:57:50] 2026-01-11 03:57:50,409 [wrapper] ==== wrapper stdout END ====
[2026-01-10 22:57:50] 2026-01-11 03:57:50,411 [wrapper] ==== wrapper stderr END ====
[2026-01-10 22:57:50]  *** Error codes and diagnostics ***
[2026-01-10 22:57:50]     "exeErrorCode": 0,
[2026-01-10 22:57:50]     "exeErrorDiag": "",
[2026-01-10 22:57:50]     "pilotErrorCode": 0,
[2026-01-10 22:57:50]     "pilotErrorDiag": "",
[2026-01-10 22:57:50]  *** Listing of results directory ***
[2026-01-10 22:57:50] total 429664
[2026-01-10 22:57:50] -rwx------. 1 boincer umatlas     36322 Jan 10 22:29 runpilot2-wrapper.sh
[2026-01-10 22:57:50] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 22:29 pilot3.tar.gz
[2026-01-10 22:57:50] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 22:29 queuedata.json
[2026-01-10 22:57:50] -rw-r--r--. 1 boincer umatlas       100 Jan 10 22:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 22:57:50] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 22:30 run_atlas
[2026-01-10 22:57:50] -rw-r--r--. 1 boincer umatlas       105 Jan 10 22:30 job.xml
[2026-01-10 22:57:50] -rw-r--r--. 2 boincer umatlas 391445701 Jan 10 22:30 EVNT.47962006._000033.pool.root.1
[2026-01-10 22:57:50] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 22:30 start_atlas.sh
[2026-01-10 22:57:50] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 22:30 shared
[2026-01-10 22:57:50] -rw-r--r--. 2 boincer umatlas    592608 Jan 10 22:30 input.tar.gz
[2026-01-10 22:57:50] -rw-r--r--. 1 boincer umatlas         0 Jan 10 22:30 boinc_lockfile
[2026-01-10 22:57:50] -rw-r--r--. 1 boincer umatlas      2889 Jan 10 22:30 pandaJob.out
[2026-01-10 22:57:50] -rw-------. 1 boincer umatlas    989548 Jan 10 22:30 agis_schedconf.cvmfs.json
[2026-01-10 22:57:50] -rw-------. 1 boincer umatlas   1516240 Jan 10 22:30 agis_ddmendpoints.agis.ALL.json
[2026-01-10 22:57:50] drwx------. 5 boincer umatlas      4096 Jan 10 22:30 pilot3
[2026-01-10 22:57:50] -rw-r--r--. 1 boincer umatlas      6528 Jan 10 22:48 init_data.xml
[2026-01-10 22:57:50] -rw-r--r--. 1 boincer umatlas       529 Jan 10 22:53 boinc_task_state.xml
[2026-01-10 22:57:50] -rw-------. 1 boincer umatlas  41565022 Jan 10 22:56 HITS.47962010._002951.pool.root.1
[2026-01-10 22:57:50] -rw-------. 1 boincer umatlas        95 Jan 10 22:56 pilot_heartbeat.json
[2026-01-10 22:57:50] -rw-------. 1 boincer umatlas      1033 Jan 10 22:57 memory_monitor_summary.json
[2026-01-10 22:57:50] -rw-------. 1 boincer umatlas   1247999 Jan 10 22:57 log.47962010._002951.job.log.tgz.1
[2026-01-10 22:57:50] -rw-------. 1 boincer umatlas      8564 Jan 10 22:57 heartbeat.json
[2026-01-10 22:57:50] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 22:57 boinc_mmap_file
[2026-01-10 22:57:50] -rw-r--r--. 1 boincer umatlas        27 Jan 10 22:57 wrapper_checkpoint.txt
[2026-01-10 22:57:50] -rw-------. 1 boincer umatlas      4822 Jan 10 22:57 pilotlog.txt
[2026-01-10 22:57:50] -rw-------. 1 boincer umatlas    277039 Jan 10 22:57 log.47962010._002951.job.log.1
[2026-01-10 22:57:50] -rw-------. 1 boincer umatlas       353 Jan 10 22:57 output.list
[2026-01-10 22:57:50] -rw-r--r--. 1 boincer umatlas       620 Jan 10 22:57 runtime_log
[2026-01-10 22:57:50] -rw-------. 1 boincer umatlas   1546240 Jan 10 22:57 result.tar.gz
[2026-01-10 22:57:50] -rw-r--r--. 1 boincer umatlas      8817 Jan 10 22:57 runtime_log.err
[2026-01-10 22:57:50] -rw-------. 1 boincer umatlas       649 Jan 10 22:57 50bNDmHK1y8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmVfhKDm8CJsHm.diag
[2026-01-10 22:57:50] -rw-r--r--. 1 boincer umatlas     21439 Jan 10 22:57 stderr.txt
[2026-01-10 22:57:50] HITS file was successfully produced:
[2026-01-10 22:57:50] -rw-------. 1 boincer umatlas 41565022 Jan 10 22:56 shared/HITS.pool.root.1
[2026-01-10 22:57:50]  *** Contents of shared directory: ***
[2026-01-10 22:57:50] total 424976
[2026-01-10 22:57:50] -rw-r--r--. 2 boincer umatlas 391445701 Jan 10 22:30 ATLAS.root_0
[2026-01-10 22:57:50] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 22:30 start_atlas.sh
[2026-01-10 22:57:50] -rw-r--r--. 2 boincer umatlas    592608 Jan 10 22:30 input.tar.gz
[2026-01-10 22:57:50] -rw-------. 1 boincer umatlas  41565022 Jan 10 22:56 HITS.pool.root.1
[2026-01-10 22:57:50] -rw-------. 1 boincer umatlas   1546240 Jan 10 22:57 result.tar.gz
22:57:51 (435827): run_atlas exited; CPU time 11687.560991
22:57:51 (435827): called boinc_finish(0)

</stderr_txt>
]]>

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