Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:03:08 (3980): wrapper (7.7.26015): starting
20:03:08 (3980): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 20:03:08] Arguments: --nthreads 12
[2026-01-10 20:03:08] Threads: 12
[2026-01-10 20:03:08] Checking for CVMFS
[2026-01-10 20:03:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 20:03:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 20:03:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 20:03:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 20:03:09] 2.11.2.0 6893 183150 98148 154998 3 1 10320879 20275201 1 130560 0 70552612 99.907 10388855 35145 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 20:03:09] CVMFS is ok
[2026-01-10 20:03:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 20:03:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 20:03:09] Further information can be found at the LHC@home message board.
[2026-01-10 20:03:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 20:03:09] Checking for apptainer binary...
[2026-01-10 20:03:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 20:03:09] Running /usr/bin/apptainer --version
[2026-01-10 20:03:09] apptainer version 1.3.2-1.el7
[2026-01-10 20:03:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 20:03:10] c-205-3.aglt2.org
[2026-01-10 20:03:10] apptainer works
[2026-01-10 20:03:10] Set ATHENA_PROC_NUMBER=12
[2026-01-10 20:03:10] Set ATHENA_CORE_NUMBER=12
[2026-01-10 20:03:10] Starting ATLAS job with PandaID=6965383963
[2026-01-10 20:03:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 20:37:36]  *** The last 200 lines of the pilot log: ***
[2026-01-10 20:37:36]  protocol_id=None
[2026-01-10 20:37:36]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-10 20:37:36]  replicas=None
[2026-01-10 20:37:36]  scope=mc16_13TeV
[2026-01-10 20:37:36]  status=None
[2026-01-10 20:37:36]  status_code=0
[2026-01-10 20:37:36]  storage_token=
[2026-01-10 20:37:36]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6965383963/log.47962010._002104.job.log.tgz.1
[2026-01-10 20:37:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/b0/9f/log.47962010._002104.job.log.tgz.1
[2026-01-10 20:37:36]  workdir=None
[2026-01-10 20:37:36] ]
[2026-01-10 20:37:36] 2026-01-11 01:36:23,293 | INFO     | transferring file log.47962010._002104.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6965383963/log.47962010._002104.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-10 20:37:36] 2026-01-11 01:36:23,293 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6965383963/log.47962010._002104.job.log.tgz.1 /tmp/boinchome/slots/0/log.47962010._002104.job
[2026-01-10 20:37:36] 2026-01-11 01:36:23,317 | INFO     | adding to output.list: log.47962010._002104.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/b0/9f/log.47962010._002104.job.log.tgz.
[2026-01-10 20:37:36] 2026-01-11 01:36:23,318 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 20:37:36] 2026-01-11 01:36:23,318 | INFO     | summary of transferred files:
[2026-01-10 20:37:36] 2026-01-11 01:36:23,318 | INFO     |  -- lfn=log.47962010._002104.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 20:37:36] 2026-01-11 01:36:23,318 | INFO     | stage-out finished correctly
[2026-01-10 20:37:36] 2026-01-11 01:36:23,750 | INFO     | monitor loop #156: job 0:6965383963 is in state 'finished'
[2026-01-10 20:37:36] 2026-01-11 01:36:23,751 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:37:36] 2026-01-11 01:36:23,875 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 20:37:36] 2026-01-11 01:36:24,324 | INFO     | time since job start (1977s) is within the limit (349056.0s)
[2026-01-10 20:37:36] 2026-01-11 01:36:25,442 | INFO     | PID=8041 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-10 20:37:36] 2026-01-11 01:36:26,254 | INFO     | monitor loop #157: job 0:6965383963 is in state 'finished'
[2026-01-10 20:37:36] 2026-01-11 01:36:26,254 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:37:36] 2026-01-11 01:36:26,317 | INFO     | job 6965383963 has state=finished
[2026-01-10 20:37:36] 2026-01-11 01:36:26,318 | INFO     | preparing for final server update for job 6965383963 in state='finished'
[2026-01-10 20:37:36] 2026-01-11 01:36:26,318 | INFO     | this job has now completed (state=finished)
[2026-01-10 20:37:36] 2026-01-11 01:36:26,318 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 20:37:36] 2026-01-11 01:36:26,319 | INFO     | log transfer has been attempted: DONE
[2026-01-10 20:37:36] 2026-01-11 01:36:26,319 | INFO     | job 6965383963 has finished - writing final server update
[2026-01-10 20:37:36] 2026-01-11 01:36:26,319 | INFO     | total number of processed events: 50 (read)
[2026-01-10 20:37:36] 2026-01-11 01:36:26,325 | INFO     | executing command: lscpu
[2026-01-10 20:37:36] 2026-01-11 01:36:26,351 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 20:37:36] 2026-01-11 01:36:26,442 | INFO     | time since job start (1979s) is within the limit (349056.0s)
[2026-01-10 20:37:36] 2026-01-11 01:36:28,448 | INFO     | time since job start (1981s) is within the limit (349056.0s)
[2026-01-10 20:37:36] 2026-01-11 01:36:28,772 | INFO     | monitor loop #158: job 0:6965383963 is in state 'finished'
[2026-01-10 20:37:36] 2026-01-11 01:36:28,772 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:37:36] 2026-01-11 01:36:30,454 | INFO     | time since job start (1983s) is within the limit (349056.0s)
[2026-01-10 20:37:36] 2026-01-11 01:36:31,235 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-10 20:37:36] 2026-01-11 01:36:31,239 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2026-01-10 20:37:36] 2026-01-11 01:36:31,241 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6965383963/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 20:37:36] 2026-01-11 01:36:31,243 | INFO     | extracted standard info from prmon json
[2026-01-10 20:37:36] 2026-01-11 01:36:31,243 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 20:37:36] 2026-01-11 01:36:31,243 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 20:37:36] 2026-01-11 01:36:31,244 | INFO     | fitting pss+swap vs Time
[2026-01-10 20:37:36] 2026-01-11 01:36:31,244 | INFO     | sum of square deviations: 4835352.5600000005
[2026-01-10 20:37:36] 2026-01-11 01:36:31,245 | INFO     | sum of deviations: -1147204358.28
[2026-01-10 20:37:36] 2026-01-11 01:36:31,245 | INFO     | mean x: 1768094475.24
[2026-01-10 20:37:36] 2026-01-11 01:36:31,245 | INFO     | mean y: 2901137.88
[2026-01-10 20:37:36] 2026-01-11 01:36:31,245 | INFO     | intersect: 419489518230.82623
[2026-01-10 20:37:36] 2026-01-11 01:36:31,245 | INFO     | chi2: 0.15540394243127625
[2026-01-10 20:37:36] 2026-01-11 01:36:31,245 | INFO     | current memory leak: -237.25 B/s (using 25 data points, chi2=0.16)
[2026-01-10 20:37:36] 2026-01-11 01:36:31,246 | INFO     | could have reported an average CPU frequency of 1811 MHz (5 samples)
[2026-01-10 20:37:36] 2026-01-11 01:36:31,246 | INFO     | ..............................
[2026-01-10 20:37:36] 2026-01-11 01:36:31,246 | INFO     | . Timing measurements:
[2026-01-10 20:37:36] 2026-01-11 01:36:31,246 | INFO     | . get job = 0 s
[2026-01-10 20:37:36] 2026-01-11 01:36:31,246 | INFO     | . initial setup = 2 s
[2026-01-10 20:37:36] 2026-01-11 01:36:31,246 | INFO     | . payload setup = 8 s
[2026-01-10 20:37:36] 2026-01-11 01:36:31,246 | INFO     | . stage-in = 0 s
[2026-01-10 20:37:36] 2026-01-11 01:36:31,246 | INFO     | . payload execution = 1945 s
[2026-01-10 20:37:36] 2026-01-11 01:36:31,247 | INFO     | . stage-out = 0 s
[2026-01-10 20:37:36] 2026-01-11 01:36:31,247 | INFO     | . log creation = 0 s
[2026-01-10 20:37:36] 2026-01-11 01:36:31,247 | INFO     | ..............................
[2026-01-10 20:37:36] 2026-01-11 01:36:31,751 | INFO     | 
[2026-01-10 20:37:36] 2026-01-11 01:36:31,752 | INFO     | job summary report
[2026-01-10 20:37:36] 2026-01-11 01:36:31,752 | INFO     | --------------------------------------------------
[2026-01-10 20:37:36] 2026-01-11 01:36:31,752 | INFO     | PanDA job id: 6965383963
[2026-01-10 20:37:36] 2026-01-11 01:36:31,752 | INFO     | task id: 47962010
[2026-01-10 20:37:36] 2026-01-11 01:36:31,752 | INFO     | errors: (none)
[2026-01-10 20:37:36] 2026-01-11 01:36:31,752 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 20:37:36] 2026-01-11 01:36:31,753 | INFO     | pilot state: finished 
[2026-01-10 20:37:36] 2026-01-11 01:36:31,753 | INFO     | transexitcode: 0
[2026-01-10 20:37:36] 2026-01-11 01:36:31,753 | INFO     | exeerrorcode: 0
[2026-01-10 20:37:36] 2026-01-11 01:36:31,753 | INFO     | exeerrordiag: 
[2026-01-10 20:37:36] 2026-01-11 01:36:31,753 | INFO     | exitcode: 0
[2026-01-10 20:37:36] 2026-01-11 01:36:31,753 | INFO     | exitmsg: OK
[2026-01-10 20:37:36] 2026-01-11 01:36:31,754 | INFO     | cpuconsumptiontime: 17890 s
[2026-01-10 20:37:36] 2026-01-11 01:36:31,754 | INFO     | nevents: 50
[2026-01-10 20:37:36] 2026-01-11 01:36:31,754 | INFO     | neventsw: 0
[2026-01-10 20:37:36] 2026-01-11 01:36:31,754 | INFO     | pid: 14409
[2026-01-10 20:37:36] 2026-01-11 01:36:31,754 | INFO     | pgrp: 14409
[2026-01-10 20:37:36] 2026-01-11 01:36:31,754 | INFO     | corecount: 12
[2026-01-10 20:37:36] 2026-01-11 01:36:31,754 | INFO     | event service: False
[2026-01-10 20:37:36] 2026-01-11 01:36:31,755 | INFO     | sizes: {0: 2284567, 1: 2284567, 6: 2284857, 11: 2284885, 1957: 2310601, 1960: 2319779, 1967: 2320001}
[2026-01-10 20:37:36] 2026-01-11 01:36:31,755 | INFO     | --------------------------------------------------
[2026-01-10 20:37:36] 2026-01-11 01:36:31,755 | INFO     | 
[2026-01-10 20:37:36] 2026-01-11 01:36:31,755 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-10 20:37:36] 2026-01-11 01:36:31,780 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 20:37:36] 2026-01-11 01:36:31,780 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 20:37:36] 2026-01-11 01:36:31,780 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 20:37:36] 2026-01-11 01:36:31,780 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 20:37:36] 2026-01-11 01:36:31,780 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 20:37:36] 2026-01-11 01:36:31,781 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 20:37:36] 2026-01-11 01:36:31,781 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 20:37:36] 2026-01-11 01:36:31,781 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 20:37:36] 2026-01-11 01:36:31,781 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 20:37:36] 2026-01-11 01:36:31,781 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 20:37:36] 2026-01-11 01:36:31,781 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 20:37:36] 2026-01-11 01:36:31,782 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 20:37:36] 2026-01-11 01:36:31,782 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 20:37:36] 2026-01-11 01:36:31,782 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 20:37:36] 2026-01-11 01:36:31,782 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 20:37:36] 2026-01-11 01:36:31,782 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 20:37:36] 2026-01-11 01:36:31,782 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 20:37:36] 2026-01-11 01:36:31,783 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 20:37:36] 2026-01-11 01:36:31,783 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 20:37:36] 2026-01-11 01:36:31,783 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 20:37:36] 2026-01-11 01:36:31,783 | INFO     | job 6965383963 has completed (purged errors)
[2026-01-10 20:37:36] 2026-01-11 01:36:31,783 | INFO     | overall cleanup function is called
[2026-01-10 20:37:36] 2026-01-11 01:36:32,798 | INFO     | --- collectZombieJob: --- 10, [14409]
[2026-01-10 20:37:36] 2026-01-11 01:36:32,799 | INFO     | zombie collector waiting for pid 14409
[2026-01-10 20:37:36] 2026-01-11 01:36:32,799 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 20:37:36] 2026-01-11 01:36:32,799 | INFO     | collected zombie processes
[2026-01-10 20:37:36] 2026-01-11 01:36:32,799 | INFO     | will attempt to kill all subprocesses of pid=14409
[2026-01-10 20:37:36] 2026-01-11 01:36:32,893 | INFO     | process IDs to be killed: [14409] (in reverse order)
[2026-01-10 20:37:36] 2026-01-11 01:36:32,944 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 20:37:36] 2026-01-11 01:36:32,945 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 20:37:36] 2026-01-11 01:36:32,948 | INFO     | did not find any defunct processes belonging to 14409
[2026-01-10 20:37:36] 2026-01-11 01:36:32,952 | INFO     | did not find any defunct processes belonging to 14409
[2026-01-10 20:37:36] 2026-01-11 01:36:32,952 | INFO     | ready for new job
[2026-01-10 20:37:36] 2026-01-11 01:36:32,952 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 20:37:36] 2026-01-11 01:36:32,953 | INFO     | ***************************************
[2026-01-10 20:37:36] 2026-01-11 01:36:32,954 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 20:37:36] 2026-01-11 01:36:32,954 | INFO     | ***************************************
[2026-01-10 20:37:36] 2026-01-11 01:36:32,954 | INFO     | 
[2026-01-10 20:37:36] 2026-01-11 01:36:32,954 | INFO     | architecture information:
[2026-01-10 20:37:36] 2026-01-11 01:36:32,955 | INFO     | executing command: cat /etc/os-release
[2026-01-10 20:37:36] 2026-01-11 01:36:32,970 | INFO     | cat /etc/os-release:
[2026-01-10 20:37:36] NAME="CentOS Linux"
[2026-01-10 20:37:36] VERSION="7 (Core)"
[2026-01-10 20:37:36] ID="centos"
[2026-01-10 20:37:36] ID_LIKE="rhel fedora"
[2026-01-10 20:37:36] VERSION_ID="7"
[2026-01-10 20:37:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 20:37:36] ANSI_COLOR="0;31"
[2026-01-10 20:37:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 20:37:36] HOME_URL="https://www.centos.org/"
[2026-01-10 20:37:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 20:37:36] 
[2026-01-10 20:37:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 20:37:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 20:37:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 20:37:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 20:37:36] 
[2026-01-10 20:37:36] 2026-01-11 01:36:32,970 | INFO     | ***************************************
[2026-01-10 20:37:36] 2026-01-11 01:36:33,473 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-10 20:37:36] 2026-01-11 01:36:33,490 | INFO     | sufficient remaining disk space (29273096192 B)
[2026-01-10 20:37:36] 2026-01-11 01:36:33,490 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 20:37:36] 2026-01-11 01:36:33,490 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 20:37:36] 2026-01-11 01:36:33,490 | INFO     | update_server=False
[2026-01-10 20:37:36] 2026-01-11 01:36:33,490 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 20:37:36] 2026-01-11 01:36:33,652 | INFO     | all job control threads have been joined
[2026-01-10 20:37:36] 2026-01-11 01:36:33,737 | INFO     | all data control threads have been joined
[2026-01-10 20:37:36] 2026-01-11 01:36:33,783 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 20:37:36] 2026-01-11 01:36:33,784 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 20:37:36] 2026-01-11 01:36:33,784 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 20:37:36] 2026-01-11 01:36:33,784 | INFO     | will abort loop
[2026-01-10 20:37:36] 2026-01-11 01:36:33,920 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 20:37:36] 2026-01-11 01:36:34,241 | INFO     | all payload control threads have been joined
[2026-01-10 20:37:36] 2026-01-11 01:36:34,462 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 20:37:36] 2026-01-11 01:36:34,496 | INFO     | [job] retrieve thread has finished
[2026-01-10 20:37:36] 2026-01-11 01:36:34,624 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 20:37:36] 2026-01-11 01:36:34,658 | INFO     | [job] control thread has finished
[2026-01-10 20:37:36] 2026-01-11 01:36:34,742 | INFO     | [data] control thread has finished
[2026-01-10 20:37:36] 2026-01-11 01:36:34,790 | INFO     | [job] job monitor thread has finished
[2026-01-10 20:37:36] 2026-01-11 01:36:34,853 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 20:37:36] 2026-01-11 01:36:34,913 | INFO     | [payload] validate_post thread has finished
[2026-01-10 20:37:36] 2026-01-11 01:36:35,247 | INFO     | [payload] control thread has finished
[2026-01-10 20:37:36] 2026-01-11 01:36:35,259 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 20:37:36] 2026-01-11 01:36:35,359 | INFO     | [data] copytool_in thread has finished
[2026-01-10 20:37:36] 2026-01-11 01:36:35,513 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 20:37:36] 2026-01-11 01:36:35,710 | INFO     | [payload] failed_post thread has finished
[2026-01-10 20:37:36] 2026-01-11 01:36:35,885 | INFO     | [job] validate thread has finished
[2026-01-10 20:37:36] 2026-01-11 01:36:35,925 | INFO     | [data] copytool_out thread has finished
[2026-01-10 20:37:36] 2026-01-11 01:36:36,340 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 20:37:36] 2026-01-11 01:36:37,345 | INFO     | [job] queue monitor thread has finished
[2026-01-10 20:37:36] 2026-01-11 01:36:38,468 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 20:37:36] 2026-01-11 01:37:03,650 | INFO     | PID=8041 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-10 20:37:36] 2026-01-11 01:37:03,651 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 20:37:36] 2026-01-11 01:37:03,651 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 20:37:36] 2026-01-11 01:37:03,651 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 20:37:36] 2026-01-11 01:37:30,038 | INFO     | [monitor] cgroup control has ended
[2026-01-10 20:37:36] 2026-01-11 01:37:31,645 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139716565899072)>', '<ExcThread(monitor, started 139716124980992)>']
[2026-01-10 20:37:36] 2026-01-11 01:37:31,770 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 20:37:36] 2026-01-11 01:37:31,771 | INFO     | [monitor] control thread has ended
[2026-01-10 20:37:36] 2026-01-11 01:37:36,650 | INFO     | all workflow threads have been joined
[2026-01-10 20:37:36] 2026-01-11 01:37:36,650 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 20:37:36] 2026-01-11 01:37:36,651 | INFO     | traces error code: 0
[2026-01-10 20:37:36] 2026-01-11 01:37:36,651 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 20:37:36] 2026-01-11 01:37:36,748 [wrapper] ==== pilot stdout END ====
[2026-01-10 20:37:36] 2026-01-11 01:37:36,751 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 20:37:36] 2026-01-11 01:37:36,755 [wrapper] pilotpid: 8041
[2026-01-10 20:37:36] 2026-01-11 01:37:36,759 [wrapper] Pilot exit status: 0
[2026-01-10 20:37:36] 2026-01-11 01:37:36,772 [wrapper] pandaids: 6965383963
[2026-01-10 20:37:36] 2026-01-11 01:37:36,824 [wrapper] cleanup supervisor_pilot 27890 8042
[2026-01-10 20:37:36] 2026-01-11 01:37:36,829 [wrapper] Test setup, not cleaning
[2026-01-10 20:37:36] 2026-01-11 01:37:36,833 [wrapper] apfmon messages muted
[2026-01-10 20:37:36] 2026-01-11 01:37:36,837 [wrapper] ==== wrapper stdout END ====
[2026-01-10 20:37:36] 2026-01-11 01:37:36,840 [wrapper] ==== wrapper stderr END ====
[2026-01-10 20:37:36]  *** Error codes and diagnostics ***
[2026-01-10 20:37:36]     "exeErrorCode": 0,
[2026-01-10 20:37:36]     "exeErrorDiag": "",
[2026-01-10 20:37:36]     "pilotErrorCode": 0,
[2026-01-10 20:37:36]     "pilotErrorDiag": "",
[2026-01-10 20:37:36]  *** Listing of results directory ***
[2026-01-10 20:37:36] total 434552
[2026-01-10 20:37:36] -rw-r--r-- 1 boincer umatlas      5112 Jan 10 08:13 queuedata.json
[2026-01-10 20:37:36] -rw-r--r-- 1 boincer umatlas    579449 Jan 10 08:14 pilot3.tar.gz
[2026-01-10 20:37:36] -rwx------ 1 boincer umatlas     36322 Jan 10 08:14 runpilot2-wrapper.sh
[2026-01-10 20:37:36] -rw-r--r-- 1 boincer umatlas       100 Jan 10 20:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 20:37:36] -rwxr-xr-x 1 boincer umatlas      7986 Jan 10 20:03 run_atlas
[2026-01-10 20:37:36] -rw-r--r-- 1 boincer umatlas       105 Jan 10 20:03 job.xml
[2026-01-10 20:37:36] -rw-r--r-- 2 boincer umatlas 394320947 Jan 10 20:03 EVNT.47962006._000059.pool.root.1
[2026-01-10 20:37:36] -rw-r--r-- 2 boincer umatlas    592619 Jan 10 20:03 input.tar.gz
[2026-01-10 20:37:36] -rw-r--r-- 2 boincer umatlas     15847 Jan 10 20:03 start_atlas.sh
[2026-01-10 20:37:36] drwxrwx--x 2 boincer umatlas      4096 Jan 10 20:03 shared
[2026-01-10 20:37:36] -rw-r--r-- 1 boincer umatlas         0 Jan 10 20:03 boinc_lockfile
[2026-01-10 20:37:36] -rw-r--r-- 1 boincer umatlas      2889 Jan 10 20:03 pandaJob.out
[2026-01-10 20:37:36] -rw------- 1 boincer umatlas        57 Jan 10 20:03 setup.sh.local
[2026-01-10 20:37:36] -rw------- 1 boincer umatlas    989540 Jan 10 20:03 agis_schedconf.cvmfs.json
[2026-01-10 20:37:36] -rw------- 1 boincer umatlas   1516240 Jan 10 20:03 agis_ddmendpoints.agis.ALL.json
[2026-01-10 20:37:36] drwx------ 5 boincer umatlas      4096 Jan 10 20:03 pilot3
[2026-01-10 20:37:36] -rw-r--r-- 1 boincer umatlas       529 Jan 10 20:29 boinc_task_state.xml
[2026-01-10 20:37:36] -rw------- 1 boincer umatlas  42860132 Jan 10 20:36 HITS.47962010._002104.pool.root.1
[2026-01-10 20:37:36] -rw------- 1 boincer umatlas      1047 Jan 10 20:36 memory_monitor_summary.json
[2026-01-10 20:37:36] -rw------- 1 boincer umatlas   1612674 Jan 10 20:36 log.47962010._002104.job.log.tgz.1
[2026-01-10 20:37:36] -rw------- 1 boincer umatlas      8622 Jan 10 20:36 heartbeat.json
[2026-01-10 20:37:36] -rw-r--r-- 1 boincer umatlas      5952 Jan 10 20:36 init_data.xml
[2026-01-10 20:37:36] -rw------- 1 boincer umatlas        95 Jan 10 20:37 pilot_heartbeat.json
[2026-01-10 20:37:36] -rw-r--r-- 1 boincer umatlas      8192 Jan 10 20:37 boinc_mmap_file
[2026-01-10 20:37:36] -rw-r--r-- 1 boincer umatlas        27 Jan 10 20:37 wrapper_checkpoint.txt
[2026-01-10 20:37:36] -rw------- 1 boincer umatlas      4931 Jan 10 20:37 pilotlog.txt
[2026-01-10 20:37:36] -rw------- 1 boincer umatlas    330502 Jan 10 20:37 log.47962010._002104.job.log.1
[2026-01-10 20:37:36] -rw------- 1 boincer umatlas       353 Jan 10 20:37 output.list
[2026-01-10 20:37:36] -rw-r--r-- 1 boincer umatlas       620 Jan 10 20:37 runtime_log
[2026-01-10 20:37:36] -rw------- 1 boincer umatlas   1966080 Jan 10 20:37 result.tar.gz
[2026-01-10 20:37:36] -rw------- 1 boincer umatlas       658 Jan 10 20:37 YEcNDmNyny8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6XhKDmf4tENm.diag
[2026-01-10 20:37:36] -rw-r--r-- 1 boincer umatlas      9339 Jan 10 20:37 runtime_log.err
[2026-01-10 20:37:36] -rw-r--r-- 1 boincer umatlas     21957 Jan 10 20:37 stderr.txt
[2026-01-10 20:37:37] HITS file was successfully produced:
[2026-01-10 20:37:37] -rw------- 1 boincer umatlas 42860132 Jan 10 20:36 shared/HITS.pool.root.1
[2026-01-10 20:37:37]  *** Contents of shared directory: ***
[2026-01-10 20:37:37] total 429452
[2026-01-10 20:37:37] -rw-r--r-- 2 boincer umatlas 394320947 Jan 10 20:03 ATLAS.root_0
[2026-01-10 20:37:37] -rw-r--r-- 2 boincer umatlas    592619 Jan 10 20:03 input.tar.gz
[2026-01-10 20:37:37] -rw-r--r-- 2 boincer umatlas     15847 Jan 10 20:03 start_atlas.sh
[2026-01-10 20:37:37] -rw------- 1 boincer umatlas  42860132 Jan 10 20:36 HITS.pool.root.1
[2026-01-10 20:37:37] -rw------- 1 boincer umatlas   1966080 Jan 10 20:37 result.tar.gz
20:37:38 (3980): run_atlas exited; CPU time 17509.497711
20:37:38 (3980): called boinc_finish(0)

</stderr_txt>
]]>

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