Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:52:15 (1344): wrapper (7.7.26015): starting
00:52:15 (1344): wrapper: running run_atlas (--nthreads 8)
[2026-01-11 00:52:15] Arguments: --nthreads 8
[2026-01-11 00:52:15] Threads: 8
[2026-01-11 00:52:15] Checking for CVMFS
[2026-01-11 00:52:16] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 00:52:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 00:52:20] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 00:52:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 00:52:22] 2.11.2.0 16377 37516 98520 154997 3 11 22409489 25165824 96 130560 0 15998454 99.830 9484566 2186 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-11 00:52:22] CVMFS is ok
[2026-01-11 00:52:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 00:52:22] Checking for apptainer binary...
[2026-01-11 00:52:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 00:52:22] Running /usr/bin/apptainer --version
[2026-01-11 00:52:22] apptainer version 1.3.2-1.el7
[2026-01-11 00:52:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 00:52:46] cg-vwn414.simple-grid.lan
[2026-01-11 00:52:46] apptainer works
[2026-01-11 00:52:46] Set ATHENA_PROC_NUMBER=8
[2026-01-11 00:52:46] Set ATHENA_CORE_NUMBER=8
[2026-01-11 00:52:46] Starting ATLAS job with PandaID=6965803196
[2026-01-11 00:52:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 03:15:04]  *** The last 200 lines of the pilot log: ***
[2026-01-11 03:15:04] 2026-01-11 02:14:15,372 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 03:15:04] 2026-01-11 02:14:16,342 | INFO     | time since job start (8217s) is within the limit (349056.0s)
[2026-01-11 03:15:04] 2026-01-11 02:14:17,885 | INFO     | monitor loop #660: job 0:6965803196 is in state 'finished'
[2026-01-11 03:15:04] 2026-01-11 02:14:17,885 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 03:15:04] 2026-01-11 02:14:18,351 | INFO     | time since job start (8219s) is within the limit (349056.0s)
[2026-01-11 03:15:04] 2026-01-11 02:14:20,357 | INFO     | time since job start (8221s) is within the limit (349056.0s)
[2026-01-11 03:15:04] 2026-01-11 02:14:20,391 | INFO     | monitor loop #661: job 0:6965803196 is in state 'finished'
[2026-01-11 03:15:04] 2026-01-11 02:14:20,391 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 03:15:04] 2026-01-11 02:14:22,364 | INFO     | time since job start (8223s) is within the limit (349056.0s)
[2026-01-11 03:15:04] 2026-01-11 02:14:22,903 | INFO     | monitor loop #662: job 0:6965803196 is in state 'finished'
[2026-01-11 03:15:04] 2026-01-11 02:14:22,903 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 03:15:04] 2026-01-11 02:14:23,507 | INFO     | PID=5487 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-11 03:15:04] 2026-01-11 02:14:23,507 | INFO     | .. there are 2 such processes running
[2026-01-11 03:15:04] 2026-01-11 02:14:24,508 | INFO     | time since job start (8225s) is within the limit (349056.0s)
[2026-01-11 03:15:04] 2026-01-11 02:14:25,408 | INFO     | monitor loop #663: job 0:6965803196 is in state 'finished'
[2026-01-11 03:15:04] 2026-01-11 02:14:25,408 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 03:15:04] 2026-01-11 02:14:26,475 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-11 03:15:04] 2026-01-11 02:14:26,476 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-11 03:15:04] 2026-01-11 02:14:26,478 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6965803196/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 03:15:04] 2026-01-11 02:14:26,479 | INFO     | extracted standard info from prmon json
[2026-01-11 03:15:04] 2026-01-11 02:14:26,479 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 03:15:04] 2026-01-11 02:14:26,479 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 03:15:04] 2026-01-11 02:14:26,482 | INFO     | fitting pss+swap vs Time
[2026-01-11 03:15:04] 2026-01-11 02:14:26,483 | INFO     | sum of square deviations: 591170133.9354851
[2026-01-11 03:15:04] 2026-01-11 02:14:26,483 | INFO     | sum of deviations: 30015050922.838684
[2026-01-11 03:15:04] 2026-01-11 02:14:26,483 | INFO     | mean x: 1768093749.1290324
[2026-01-11 03:15:04] 2026-01-11 02:14:26,484 | INFO     | mean y: 1838677.822580645
[2026-01-11 03:15:04] 2026-01-11 02:14:26,484 | INFO     | intersect: -89768298326.85258
[2026-01-11 03:15:04] 2026-01-11 02:14:26,484 | INFO     | chi2: 37.76716342701066
[2026-01-11 03:15:04] 2026-01-11 02:14:26,484 | INFO     | sum of square deviations: 522522866.87394893
[2026-01-11 03:15:04] 2026-01-11 02:14:26,485 | INFO     | sum of deviations: 56167382498.47058
[2026-01-11 03:15:04] 2026-01-11 02:14:26,485 | INFO     | mean x: 1768093596.6554623
[2026-01-11 03:15:04] 2026-01-11 02:14:26,485 | INFO     | mean y: 1897009.3529411764
[2026-01-11 03:15:04] 2026-01-11 02:14:26,486 | INFO     | intersect: -190055219400.8286
[2026-01-11 03:15:04] 2026-01-11 02:14:26,494 | INFO     | chi2: 32.35532006512661
[2026-01-11 03:15:04] 2026-01-11 02:14:26,494 | INFO     | current chi2=32.35532006512661 (change=14.32949385341859 %)
[2026-01-11 03:15:04] 2026-01-11 02:14:26,494 | INFO     | right removable region: 118
[2026-01-11 03:15:04] 2026-01-11 02:14:26,495 | INFO     | sum of square deviations: 522475286.87394893
[2026-01-11 03:15:04] 2026-01-11 02:14:26,495 | INFO     | sum of deviations: -4149150887.218504
[2026-01-11 03:15:04] 2026-01-11 02:14:26,496 | INFO     | mean x: 1768093901.6554623
[2026-01-11 03:15:04] 2026-01-11 02:14:26,496 | INFO     | mean y: 1914535.3361344538
[2026-01-11 03:15:04] 2026-01-11 02:14:26,496 | INFO     | intersect: 14042939182.898602
[2026-01-11 03:15:04] 2026-01-11 02:14:26,496 | INFO     | chi2: 30.102633252854137
[2026-01-11 03:15:04] 2026-01-11 02:14:26,496 | INFO     | current chi2=30.102633252854137 (change=20.294164238649 %)
[2026-01-11 03:15:04] 2026-01-11 02:14:26,496 | INFO     | left removable region: 10
[2026-01-11 03:15:04] 2026-01-11 02:14:26,497 | INFO     | sum of square deviations: 390559426.66666734
[2026-01-11 03:15:04] 2026-01-11 02:14:26,497 | INFO     | sum of deviations: -1921279288.7777786
[2026-01-11 03:15:04] 2026-01-11 02:14:26,498 | INFO     | mean x: 1768093871.2222223
[2026-01-11 03:15:04] 2026-01-11 02:14:26,498 | INFO     | mean y: 2070546.5740740742
[2026-01-11 03:15:04] 2026-01-11 02:14:26,498 | INFO     | intersect: 8699856090.727478
[2026-01-11 03:15:04] 2026-01-11 02:14:26,498 | INFO     | chi2: 19.02958364907875
[2026-01-11 03:15:04] 2026-01-11 02:14:26,498 | INFO     | current memory leak: -4.92 B/s (using 108 data points, chi2=19.03)
[2026-01-11 03:15:04] 2026-01-11 02:14:26,499 | INFO     | could have reported an average CPU frequency of 1999 MHz (8 samples)
[2026-01-11 03:15:04] 2026-01-11 02:14:26,499 | INFO     | ..............................
[2026-01-11 03:15:04] 2026-01-11 02:14:26,499 | INFO     | . Timing measurements:
[2026-01-11 03:15:04] 2026-01-11 02:14:26,499 | INFO     | . get job = 0 s
[2026-01-11 03:15:04] 2026-01-11 02:14:26,499 | INFO     | . initial setup = 11 s
[2026-01-11 03:15:04] 2026-01-11 02:14:26,500 | INFO     | . payload setup = 170 s
[2026-01-11 03:15:04] 2026-01-11 02:14:26,500 | INFO     | . stage-in = 0 s
[2026-01-11 03:15:04] 2026-01-11 02:14:26,500 | INFO     | . payload execution = 7730 s
[2026-01-11 03:15:04] 2026-01-11 02:14:26,500 | INFO     | . stage-out = 3 s
[2026-01-11 03:15:04] 2026-01-11 02:14:26,500 | INFO     | . log creation = 1 s
[2026-01-11 03:15:04] 2026-01-11 02:14:26,500 | INFO     | ..............................
[2026-01-11 03:15:04] 2026-01-11 02:14:26,577 | INFO     | time since job start (8227s) is within the limit (349056.0s)
[2026-01-11 03:15:04] 2026-01-11 02:14:27,188 | INFO     | 
[2026-01-11 03:15:04] 2026-01-11 02:14:27,188 | INFO     | job summary report
[2026-01-11 03:15:04] 2026-01-11 02:14:27,188 | INFO     | --------------------------------------------------
[2026-01-11 03:15:04] 2026-01-11 02:14:27,188 | INFO     | PanDA job id: 6965803196
[2026-01-11 03:15:04] 2026-01-11 02:14:27,189 | INFO     | task id: 47962010
[2026-01-11 03:15:04] 2026-01-11 02:14:27,189 | INFO     | errors: (none)
[2026-01-11 03:15:04] 2026-01-11 02:14:27,189 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 03:15:04] 2026-01-11 02:14:27,189 | INFO     | pilot state: finished 
[2026-01-11 03:15:04] 2026-01-11 02:14:27,189 | INFO     | transexitcode: 0
[2026-01-11 03:15:04] 2026-01-11 02:14:27,189 | INFO     | exeerrorcode: 0
[2026-01-11 03:15:04] 2026-01-11 02:14:27,189 | INFO     | exeerrordiag: 
[2026-01-11 03:15:04] 2026-01-11 02:14:27,189 | INFO     | exitcode: 0
[2026-01-11 03:15:04] 2026-01-11 02:14:27,189 | INFO     | exitmsg: OK
[2026-01-11 03:15:04] 2026-01-11 02:14:27,189 | INFO     | cpuconsumptiontime: 18284 s
[2026-01-11 03:15:04] 2026-01-11 02:14:27,189 | INFO     | nevents: 50
[2026-01-11 03:15:04] 2026-01-11 02:14:27,190 | INFO     | neventsw: 0
[2026-01-11 03:15:04] 2026-01-11 02:14:27,190 | INFO     | pid: 11964
[2026-01-11 03:15:04] 2026-01-11 02:14:27,190 | INFO     | pgrp: 11964
[2026-01-11 03:15:04] 2026-01-11 02:14:27,190 | INFO     | corecount: 8
[2026-01-11 03:15:04] 2026-01-11 02:14:27,190 | INFO     | event service: False
[2026-01-11 03:15:04] 2026-01-11 02:14:27,190 | INFO     | sizes: {0: 2284390, 1: 2284645, 2: 2284645, 12: 2284673, 23: 2284701, 34: 2284729, 44: 2284885, 55: 2284913, 66: 2284941, 77: 2284969, 87: 2285025, 98: 2285333, 10
[2026-01-11 03:15:04] 2026-01-11 02:14:27,190 | INFO     | --------------------------------------------------
[2026-01-11 03:15:04] 2026-01-11 02:14:27,190 | INFO     | 
[2026-01-11 03:15:04] 2026-01-11 02:14:27,190 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-01-11 03:15:04] 2026-01-11 02:14:27,803 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 03:15:04] 2026-01-11 02:14:27,804 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 03:15:04] 2026-01-11 02:14:27,804 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 03:15:04] 2026-01-11 02:14:27,804 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 03:15:04] 2026-01-11 02:14:27,804 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 03:15:04] 2026-01-11 02:14:27,804 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 03:15:04] 2026-01-11 02:14:27,804 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 03:15:04] 2026-01-11 02:14:27,804 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 03:15:04] 2026-01-11 02:14:27,804 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 03:15:04] 2026-01-11 02:14:27,805 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 03:15:04] 2026-01-11 02:14:27,805 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 03:15:04] 2026-01-11 02:14:27,805 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 03:15:04] 2026-01-11 02:14:27,805 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 03:15:04] 2026-01-11 02:14:27,805 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 03:15:04] 2026-01-11 02:14:27,805 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 03:15:04] 2026-01-11 02:14:27,805 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 03:15:04] 2026-01-11 02:14:27,805 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 03:15:04] 2026-01-11 02:14:27,805 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 03:15:04] 2026-01-11 02:14:27,806 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 03:15:04] 2026-01-11 02:14:27,806 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 03:15:04] 2026-01-11 02:14:27,806 | INFO     | job 6965803196 has completed (purged errors)
[2026-01-11 03:15:04] 2026-01-11 02:14:27,806 | INFO     | overall cleanup function is called
[2026-01-11 03:15:04] 2026-01-11 02:14:28,828 | INFO     | --- collectZombieJob: --- 10, [11964]
[2026-01-11 03:15:04] 2026-01-11 02:14:28,828 | INFO     | zombie collector waiting for pid 11964
[2026-01-11 03:15:04] 2026-01-11 02:14:28,828 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 03:15:04] 2026-01-11 02:14:28,829 | INFO     | collected zombie processes
[2026-01-11 03:15:04] 2026-01-11 02:14:28,829 | INFO     | will attempt to kill all subprocesses of pid=11964
[2026-01-11 03:15:04] 2026-01-11 02:14:28,911 | INFO     | process IDs to be killed: [11964] (in reverse order)
[2026-01-11 03:15:04] 2026-01-11 02:14:30,075 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 03:15:04] 2026-01-11 02:14:30,075 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 03:15:04] 2026-01-11 02:14:30,077 | INFO     | did not find any defunct processes belonging to 11964
[2026-01-11 03:15:04] 2026-01-11 02:14:30,079 | INFO     | did not find any defunct processes belonging to 11964
[2026-01-11 03:15:04] 2026-01-11 02:14:30,079 | INFO     | ready for new job
[2026-01-11 03:15:04] 2026-01-11 02:14:30,079 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 03:15:04] 2026-01-11 02:14:30,081 | INFO     | ***************************************
[2026-01-11 03:15:04] 2026-01-11 02:14:30,081 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 03:15:04] 2026-01-11 02:14:30,081 | INFO     | ***************************************
[2026-01-11 03:15:04] 2026-01-11 02:14:30,081 | INFO     | 
[2026-01-11 03:15:04] 2026-01-11 02:14:30,082 | INFO     | pilot is running in a VM
[2026-01-11 03:15:04] 2026-01-11 02:14:30,082 | INFO     | architecture information:
[2026-01-11 03:15:04] 2026-01-11 02:14:30,094 | INFO     | executing command: cat /etc/os-release
[2026-01-11 03:15:04] 2026-01-11 02:14:30,378 | INFO     | cat /etc/os-release:
[2026-01-11 03:15:04] NAME="CentOS Linux"
[2026-01-11 03:15:04] VERSION="7 (Core)"
[2026-01-11 03:15:04] ID="centos"
[2026-01-11 03:15:04] ID_LIKE="rhel fedora"
[2026-01-11 03:15:04] VERSION_ID="7"
[2026-01-11 03:15:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 03:15:04] ANSI_COLOR="0;31"
[2026-01-11 03:15:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 03:15:04] HOME_URL="https://www.centos.org/"
[2026-01-11 03:15:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 03:15:04] 
[2026-01-11 03:15:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 03:15:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 03:15:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 03:15:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 03:15:04] 
[2026-01-11 03:15:04] 2026-01-11 02:14:30,379 | INFO     | ***************************************
[2026-01-11 03:15:04] 2026-01-11 02:14:30,882 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-01-11 03:15:04] 2026-01-11 02:14:31,133 | INFO     | sufficient remaining disk space (496273195008 B)
[2026-01-11 03:15:04] 2026-01-11 02:14:31,133 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 03:15:04] 2026-01-11 02:14:31,133 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 03:15:04] 2026-01-11 02:14:31,133 | INFO     | update_server=False
[2026-01-11 03:15:04] 2026-01-11 02:14:31,134 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 03:15:04] 2026-01-11 02:14:31,440 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 03:15:04] 2026-01-11 02:14:31,440 | INFO     | aborting loop
[2026-01-11 03:15:04] 2026-01-11 02:14:31,708 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 03:15:04] 2026-01-11 02:14:31,715 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 03:15:04] 2026-01-11 02:14:31,916 | INFO     | all payload control threads have been joined
[2026-01-11 03:15:04] 2026-01-11 02:14:32,048 | INFO     | [monitor] cgroup control has ended
[2026-01-11 03:15:04] 2026-01-11 02:14:32,139 | INFO     | [job] retrieve thread has finished
[2026-01-11 03:15:04] 2026-01-11 02:14:32,155 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 03:15:04] 2026-01-11 02:14:32,203 | INFO     | all data control threads have been joined
[2026-01-11 03:15:04] 2026-01-11 02:14:32,208 | INFO     | all job control threads have been joined
[2026-01-11 03:15:04] 2026-01-11 02:14:32,307 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 03:15:04] 2026-01-11 02:14:32,446 | INFO     | [job] job monitor thread has finished
[2026-01-11 03:15:04] 2026-01-11 02:14:32,574 | INFO     | [payload] failed_post thread has finished
[2026-01-11 03:15:04] 2026-01-11 02:14:32,714 | INFO     | [job] queue monitor thread has finished
[2026-01-11 03:15:04] 2026-01-11 02:14:32,922 | INFO     | [payload] control thread has finished
[2026-01-11 03:15:04] 2026-01-11 02:14:32,937 | INFO     | [data] copytool_in thread has finished
[2026-01-11 03:15:04] 2026-01-11 02:14:33,129 | INFO     | [payload] validate_post thread has finished
[2026-01-11 03:15:04] 2026-01-11 02:14:33,154 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 03:15:04] 2026-01-11 02:14:33,209 | INFO     | [data] control thread has finished
[2026-01-11 03:15:04] 2026-01-11 02:14:33,214 | INFO     | [job] control thread has finished
[2026-01-11 03:15:04] 2026-01-11 02:14:33,297 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 03:15:04] 2026-01-11 02:14:33,314 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 03:15:04] 2026-01-11 02:14:33,405 | INFO     | [job] validate thread has finished
[2026-01-11 03:15:04] 2026-01-11 02:14:33,722 | INFO     | [data] copytool_out thread has finished
[2026-01-11 03:15:04] 2026-01-11 02:14:37,323 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 03:15:04] 2026-01-11 02:14:38,614 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140312221677376)>', '<ExcThread(monitor, started 140311774865152)>']
[2026-01-11 03:15:04] 2026-01-11 02:14:43,640 | INFO     | all workflow threads have been joined
[2026-01-11 03:15:04] 2026-01-11 02:14:43,640 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 03:15:04] 2026-01-11 02:14:43,640 | INFO     | traces error code: 0
[2026-01-11 03:15:04] 2026-01-11 02:14:43,641 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 03:15:04] 2026-01-11 02:14:59,711 | INFO     | PID=5487 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-11 03:15:04] 2026-01-11 02:14:59,711 | INFO     | .. there are 2 such processes running
[2026-01-11 03:15:04] 2026-01-11 02:14:59,712 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 03:15:04] 2026-01-11 02:14:59,712 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 03:15:04] 2026-01-11 02:14:59,712 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 03:15:04] 2026-01-11 02:14:59,712 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 03:15:04] 2026-01-11 02:14:59,712 | INFO     | [monitor] control thread has ended
[2026-01-11 03:15:04] 2026-01-11 02:15:00,057 [wrapper] ==== pilot stdout END ====
[2026-01-11 03:15:04] 2026-01-11 02:15:00,180 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 03:15:04] 2026-01-11 02:15:00,275 [wrapper] pilotpid: 5487
[2026-01-11 03:15:04] 2026-01-11 02:15:00,382 [wrapper] Pilot exit status: 0
[2026-01-11 03:15:04] 2026-01-11 02:15:00,776 [wrapper] pandaids: 6965803196
[2026-01-11 03:15:04] 2026-01-11 02:15:01,586 [wrapper] cleanup supervisor_pilot 28807 5488
[2026-01-11 03:15:04] 2026-01-11 02:15:01,690 [wrapper] Test setup, not cleaning
[2026-01-11 03:15:04] 2026-01-11 02:15:01,816 [wrapper] apfmon messages muted
[2026-01-11 03:15:04] 2026-01-11 02:15:01,934 [wrapper] ==== wrapper stdout END ====
[2026-01-11 03:15:04] 2026-01-11 02:15:02,027 [wrapper] ==== wrapper stderr END ====
[2026-01-11 03:15:04]  *** Error codes and diagnostics ***
[2026-01-11 03:15:04]     "exeErrorCode": 0,
[2026-01-11 03:15:04]     "exeErrorDiag": "",
[2026-01-11 03:15:04]     "pilotErrorCode": 0,
[2026-01-11 03:15:04]     "pilotErrorDiag": "",
[2026-01-11 03:15:04]  *** Listing of results directory ***
[2026-01-11 03:15:04] total 432364
[2026-01-11 03:15:04] -rw-r--r--. 1 boinc boinc    579449 Jan 11 00:00 pilot3.tar.gz
[2026-01-11 03:15:04] -rwx------. 1 boinc boinc     36322 Jan 11 00:05 runpilot2-wrapper.sh
[2026-01-11 03:15:04] -rw-r--r--. 1 boinc boinc      5112 Jan 11 00:05 queuedata.json
[2026-01-11 03:15:04] -rw-r--r--. 1 boinc boinc       100 Jan 11 00:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 03:15:04] -rwxr-xr-x. 1 boinc boinc      7986 Jan 11 00:52 run_atlas
[2026-01-11 03:15:04] -rw-r--r--. 1 boinc boinc       105 Jan 11 00:52 job.xml
[2026-01-11 03:15:04] -rw-r--r--. 1 boinc boinc      6391 Jan 11 00:52 init_data.xml
[2026-01-11 03:15:04] -rw-r--r--. 2 boinc boinc 391771826 Jan 11 00:52 EVNT.47962006._000010.pool.root.1
[2026-01-11 03:15:04] -rw-r--r--. 2 boinc boinc     15847 Jan 11 00:52 start_atlas.sh
[2026-01-11 03:15:04] drwxrwx--x. 2 boinc boinc        68 Jan 11 00:52 shared
[2026-01-11 03:15:04] -rw-r--r--. 2 boinc boinc    592616 Jan 11 00:52 input.tar.gz
[2026-01-11 03:15:04] -rw-r--r--. 1 boinc boinc         0 Jan 11 00:52 boinc_lockfile
[2026-01-11 03:15:04] -rw-r--r--. 1 boinc boinc      2889 Jan 11 00:52 pandaJob.out
[2026-01-11 03:15:04] -rw-------. 1 boinc boinc    989548 Jan 11 00:57 agis_schedconf.cvmfs.json
[2026-01-11 03:15:04] -rw-------. 1 boinc boinc   1516240 Jan 11 00:57 agis_ddmendpoints.agis.ALL.json
[2026-01-11 03:15:04] drwx------. 5 boinc boinc      4096 Jan 11 00:57 pilot3
[2026-01-11 03:15:04] -rw-r--r--. 1 boinc boinc       530 Jan 11 02:45 boinc_task_state.xml
[2026-01-11 03:15:04] -rw-------. 1 boinc boinc  42275654 Jan 11 03:12 HITS.47962010._002648.pool.root.1
[2026-01-11 03:15:04] -rw-------. 1 boinc boinc      1013 Jan 11 03:12 memory_monitor_summary.json
[2026-01-11 03:15:04] -rw-------. 1 boinc boinc   1262587 Jan 11 03:12 log.47962010._002648.job.log.tgz.1
[2026-01-11 03:15:04] -rw-------. 1 boinc boinc      8574 Jan 11 03:14 heartbeat.json
[2026-01-11 03:15:04] -rw-r--r--. 1 boinc boinc      8192 Jan 11 03:14 boinc_mmap_file
[2026-01-11 03:15:04] -rw-r--r--. 1 boinc boinc        27 Jan 11 03:14 wrapper_checkpoint.txt
[2026-01-11 03:15:04] -rw-------. 1 boinc boinc        95 Jan 11 03:14 pilot_heartbeat.json
[2026-01-11 03:15:04] -rw-------. 1 boinc boinc       819 Jan 11 03:14 pilotlog.txt
[2026-01-11 03:15:04] -rw-------. 1 boinc boinc   1130992 Jan 11 03:15 log.47962010._002648.job.log.1
[2026-01-11 03:15:04] -rw-------. 1 boinc boinc       353 Jan 11 03:15 output.list
[2026-01-11 03:15:04] -rw-r--r--. 1 boinc boinc       620 Jan 11 03:15 runtime_log
[2026-01-11 03:15:04] -rw-------. 1 boinc boinc   2416640 Jan 11 03:15 result.tar.gz
[2026-01-11 03:15:04] -rw-------. 1 boinc boinc       654 Jan 11 03:15 rutNDm9Bxy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNxmKDmFweH6n.diag
[2026-01-11 03:15:04] -rw-r--r--. 1 boinc boinc      8816 Jan 11 03:15 runtime_log.err
[2026-01-11 03:15:04] -rw-r--r--. 1 boinc boinc     21395 Jan 11 03:15 stderr.txt
[2026-01-11 03:15:04] HITS file was successfully produced:
[2026-01-11 03:15:04] -rw-------. 1 boinc boinc 42275654 Jan 11 03:12 shared/HITS.pool.root.1
[2026-01-11 03:15:04]  *** Contents of shared directory: ***
[2026-01-11 03:15:04] total 426836
[2026-01-11 03:15:04] -rw-r--r--. 2 boinc boinc 391771826 Jan 11 00:52 ATLAS.root_0
[2026-01-11 03:15:04] -rw-r--r--. 2 boinc boinc     15847 Jan 11 00:52 start_atlas.sh
[2026-01-11 03:15:04] -rw-r--r--. 2 boinc boinc    592616 Jan 11 00:52 input.tar.gz
[2026-01-11 03:15:04] -rw-------. 1 boinc boinc  42275654 Jan 11 03:12 HITS.pool.root.1
[2026-01-11 03:15:04] -rw-------. 1 boinc boinc   2416640 Jan 11 03:15 result.tar.gz
03:15:06 (1344): run_atlas exited; CPU time 18314.570228
03:15:06 (1344): called boinc_finish(0)

</stderr_txt>
]]>

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