Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:52:21 (725697): wrapper (7.7.26015): starting
18:52:21 (725697): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 18:52:21] Arguments: --nthreads 8
[2026-01-10 18:52:21] Threads: 8
[2026-01-10 18:52:21] Checking for CVMFS
[2026-01-10 18:52:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 18:52:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 18:52:21] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 18:52:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 18:52:22] 2.13.3.0 7100 95471 203956 154997 1 882 32785092 40960000 30164 16776704 0 1074939438 99.693 823153118 49085 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 18:52:22] CVMFS is ok
[2026-01-10 18:52:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 18:52:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 18:52:22] Further information can be found at the LHC@home message board.
[2026-01-10 18:52:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 18:52:22] Checking for apptainer binary...
[2026-01-10 18:52:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 18:52:22] Running /usr/bin/apptainer --version
[2026-01-10 18:52:22] apptainer version 1.4.5-2.el9
[2026-01-10 18:52:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 18:52:23] c8-6-10.aglt2.org
[2026-01-10 18:52:23] apptainer works
[2026-01-10 18:52:23] Set ATHENA_PROC_NUMBER=8
[2026-01-10 18:52:23] Set ATHENA_CORE_NUMBER=8
[2026-01-10 18:52:23] Starting ATLAS job with PandaID=6965803180
[2026-01-10 18:52:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 19:55:58]  *** The last 200 lines of the pilot log: ***
[2026-01-10 19:55:58]  lfn=log.47962010._002632.job.log.tgz.1
[2026-01-10 19:55:58]  mtime=0
[2026-01-10 19:55:58]  protocol_id=None
[2026-01-10 19:55:58]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-10 19:55:58]  replicas=None
[2026-01-10 19:55:58]  scope=mc16_13TeV
[2026-01-10 19:55:58]  status=None
[2026-01-10 19:55:58]  status_code=0
[2026-01-10 19:55:58]  storage_token=
[2026-01-10 19:55:58]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6965803180/log.47962010._002632.job.log.tgz.1
[2026-01-10 19:55:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/25/e3/log.47962010._002632.job.log.tgz.1
[2026-01-10 19:55:58]  workdir=None
[2026-01-10 19:55:58] ]
[2026-01-10 19:55:58] 2026-01-11 00:55:19,231 | INFO     | transferring file log.47962010._002632.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6965803180/log.47962010._002632.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-10 19:55:58] 2026-01-11 00:55:19,231 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6965803180/log.47962010._002632.job.log.tgz.1 /tmp/boinchome/slots/3/log.47962010._002632.job
[2026-01-10 19:55:58] 2026-01-11 00:55:19,250 | INFO     | adding to output.list: log.47962010._002632.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/25/e3/log.47962010._002632.job.log.tgz.
[2026-01-10 19:55:58] 2026-01-11 00:55:19,251 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 19:55:58] 2026-01-11 00:55:19,251 | INFO     | summary of transferred files:
[2026-01-10 19:55:58] 2026-01-11 00:55:19,251 | INFO     |  -- lfn=log.47962010._002632.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 19:55:58] 2026-01-11 00:55:19,251 | INFO     | stage-out finished correctly
[2026-01-10 19:55:58] 2026-01-11 00:55:20,204 | INFO     | time since job start (3714s) is within the limit (349056.0s)
[2026-01-10 19:55:58] 2026-01-11 00:55:21,100 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 19:55:58] 2026-01-11 00:55:21,442 | INFO     | job 6965803180 has state=finished
[2026-01-10 19:55:58] 2026-01-11 00:55:21,443 | INFO     | preparing for final server update for job 6965803180 in state='finished'
[2026-01-10 19:55:58] 2026-01-11 00:55:21,444 | INFO     | this job has now completed (state=finished)
[2026-01-10 19:55:58] 2026-01-11 00:55:21,444 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 19:55:58] 2026-01-11 00:55:21,444 | INFO     | log transfer has been attempted: DONE
[2026-01-10 19:55:58] 2026-01-11 00:55:21,444 | INFO     | job 6965803180 has finished - writing final server update
[2026-01-10 19:55:58] 2026-01-11 00:55:21,444 | INFO     | total number of processed events: 50 (read)
[2026-01-10 19:55:58] 2026-01-11 00:55:21,452 | INFO     | executing command: lscpu
[2026-01-10 19:55:58] 2026-01-11 00:55:21,509 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 19:55:58] 2026-01-11 00:55:22,213 | INFO     | time since job start (3716s) is within the limit (349056.0s)
[2026-01-10 19:55:58] 2026-01-11 00:55:24,205 | WARNING  | process 777575 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 19:55:58] 2026-01-11 00:55:24,206 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6965803180/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 19:55:58] 2026-01-11 00:55:24,219 | INFO     | time since job start (3718s) is within the limit (349056.0s)
[2026-01-10 19:55:58] 2026-01-11 00:55:24,629 | INFO     | number of running child processes to parent process 777575: 1
[2026-01-10 19:55:58] 2026-01-11 00:55:24,629 | INFO     | maximum number of monitored processes: 16
[2026-01-10 19:55:58] 2026-01-11 00:55:25,778 | INFO     | PID=739980 has CPU usage=12.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 19:55:58] 2026-01-11 00:55:25,778 | INFO     | .. there are 31 such processes running
[2026-01-10 19:55:58] 2026-01-11 00:55:26,214 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-10 19:55:58] 2026-01-11 00:55:26,218 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.8777265625013
[2026-01-10 19:55:58] 2026-01-11 00:55:26,230 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6965803180/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 19:55:58] 2026-01-11 00:55:26,231 | INFO     | extracted standard info from prmon json
[2026-01-10 19:55:58] 2026-01-11 00:55:26,231 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 19:55:58] 2026-01-11 00:55:26,231 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 19:55:58] 2026-01-11 00:55:26,232 | INFO     | fitting pss+swap vs Time
[2026-01-10 19:55:58] 2026-01-11 00:55:26,232 | INFO     | sum of square deviations: 43569155.230769195
[2026-01-10 19:55:58] 2026-01-11 00:55:26,232 | INFO     | sum of deviations: 13751839896.230766
[2026-01-10 19:55:58] 2026-01-11 00:55:26,232 | INFO     | mean x: 1768091221.7692308
[2026-01-10 19:55:58] 2026-01-11 00:55:26,232 | INFO     | mean y: 2355949.019230769
[2026-01-10 19:55:58] 2026-01-11 00:55:26,232 | INFO     | intersect: -558064636052.9333
[2026-01-10 19:55:58] 2026-01-11 00:55:26,232 | INFO     | chi2: 2.882764650274357
[2026-01-10 19:55:58] 2026-01-11 00:55:26,232 | INFO     | current memory leak: 315.63 B/s (using 52 data points, chi2=2.88)
[2026-01-10 19:55:58] 2026-01-11 00:55:26,232 | INFO     | could have reported an average CPU frequency of 3799 MHz (6 samples)
[2026-01-10 19:55:58] 2026-01-11 00:55:26,232 | INFO     | ..............................
[2026-01-10 19:55:58] 2026-01-11 00:55:26,233 | INFO     | . Timing measurements:
[2026-01-10 19:55:58] 2026-01-11 00:55:26,233 | INFO     | . get job = 0 s
[2026-01-10 19:55:58] 2026-01-11 00:55:26,233 | INFO     | . initial setup = 3 s
[2026-01-10 19:55:58] 2026-01-11 00:55:26,233 | INFO     | . payload setup = 48 s
[2026-01-10 19:55:58] 2026-01-11 00:55:26,233 | INFO     | . stage-in = 0 s
[2026-01-10 19:55:58] 2026-01-11 00:55:26,233 | INFO     | . payload execution = 3592 s
[2026-01-10 19:55:58] 2026-01-11 00:55:26,233 | INFO     | . stage-out = 0 s
[2026-01-10 19:55:58] 2026-01-11 00:55:26,233 | INFO     | . log creation = 0 s
[2026-01-10 19:55:58] 2026-01-11 00:55:26,233 | INFO     | ..............................
[2026-01-10 19:55:58] 2026-01-11 00:55:26,656 | INFO     | 
[2026-01-10 19:55:58] 2026-01-11 00:55:26,656 | INFO     | job summary report
[2026-01-10 19:55:58] 2026-01-11 00:55:26,656 | INFO     | --------------------------------------------------
[2026-01-10 19:55:58] 2026-01-11 00:55:26,656 | INFO     | PanDA job id: 6965803180
[2026-01-10 19:55:58] 2026-01-11 00:55:26,656 | INFO     | task id: 47962010
[2026-01-10 19:55:58] 2026-01-11 00:55:26,656 | INFO     | errors: (none)
[2026-01-10 19:55:58] 2026-01-11 00:55:26,656 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 19:55:58] 2026-01-11 00:55:26,656 | INFO     | pilot state: finished 
[2026-01-10 19:55:58] 2026-01-11 00:55:26,656 | INFO     | transexitcode: 0
[2026-01-10 19:55:58] 2026-01-11 00:55:26,656 | INFO     | exeerrorcode: 0
[2026-01-10 19:55:58] 2026-01-11 00:55:26,656 | INFO     | exeerrordiag: 
[2026-01-10 19:55:58] 2026-01-11 00:55:26,656 | INFO     | exitcode: 0
[2026-01-10 19:55:58] 2026-01-11 00:55:26,656 | INFO     | exitmsg: OK
[2026-01-10 19:55:58] 2026-01-11 00:55:26,657 | INFO     | cpuconsumptiontime: 8259 s
[2026-01-10 19:55:58] 2026-01-11 00:55:26,657 | INFO     | nevents: 50
[2026-01-10 19:55:58] 2026-01-11 00:55:26,657 | INFO     | neventsw: 0
[2026-01-10 19:55:58] 2026-01-11 00:55:26,657 | INFO     | pid: 777575
[2026-01-10 19:55:58] 2026-01-11 00:55:26,657 | INFO     | pgrp: 777575
[2026-01-10 19:55:58] 2026-01-11 00:55:26,657 | INFO     | corecount: 8
[2026-01-10 19:55:58] 2026-01-11 00:55:26,657 | INFO     | event service: False
[2026-01-10 19:55:58] 2026-01-11 00:55:26,657 | INFO     | sizes: {0: 2283787, 1: 2284472, 2: 2284671, 13: 2284671, 23: 2284727, 32: 2285017, 34: 2285173, 3644: 2311650, 3645: 2320644, 3647: 2320700, 3652: 2320946}
[2026-01-10 19:55:58] 2026-01-11 00:55:26,657 | INFO     | --------------------------------------------------
[2026-01-10 19:55:58] 2026-01-11 00:55:26,657 | INFO     | 
[2026-01-10 19:55:58] 2026-01-11 00:55:26,657 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-10 19:55:58] 2026-01-11 00:55:26,676 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 19:55:58] 2026-01-11 00:55:26,677 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 19:55:58] 2026-01-11 00:55:26,677 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 19:55:58] 2026-01-11 00:55:26,677 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 19:55:58] 2026-01-11 00:55:26,677 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 19:55:58] 2026-01-11 00:55:26,677 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 19:55:58] 2026-01-11 00:55:26,677 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 19:55:58] 2026-01-11 00:55:26,677 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 19:55:58] 2026-01-11 00:55:26,677 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 19:55:58] 2026-01-11 00:55:26,677 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 19:55:58] 2026-01-11 00:55:26,677 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 19:55:58] 2026-01-11 00:55:26,677 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 19:55:58] 2026-01-11 00:55:26,677 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 19:55:58] 2026-01-11 00:55:26,677 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 19:55:58] 2026-01-11 00:55:26,677 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 19:55:58] 2026-01-11 00:55:26,677 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 19:55:58] 2026-01-11 00:55:26,677 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 19:55:58] 2026-01-11 00:55:26,677 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 19:55:58] 2026-01-11 00:55:26,677 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 19:55:58] 2026-01-11 00:55:26,677 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 19:55:58] 2026-01-11 00:55:26,677 | INFO     | job 6965803180 has completed (purged errors)
[2026-01-10 19:55:58] 2026-01-11 00:55:26,677 | INFO     | overall cleanup function is called
[2026-01-10 19:55:58] 2026-01-11 00:55:27,690 | INFO     | --- collectZombieJob: --- 10, [777575]
[2026-01-10 19:55:58] 2026-01-11 00:55:27,690 | INFO     | zombie collector waiting for pid 777575
[2026-01-10 19:55:58] 2026-01-11 00:55:27,690 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 19:55:58] 2026-01-11 00:55:27,691 | INFO     | collected zombie processes
[2026-01-10 19:55:58] 2026-01-11 00:55:27,691 | INFO     | will attempt to kill all subprocesses of pid=777575
[2026-01-10 19:55:58] 2026-01-11 00:55:28,123 | INFO     | process IDs to be killed: [777575] (in reverse order)
[2026-01-10 19:55:58] 2026-01-11 00:55:28,272 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 19:55:58] 2026-01-11 00:55:28,273 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 19:55:58] 2026-01-11 00:55:28,296 | INFO     | did not find any defunct processes belonging to 777575
[2026-01-10 19:55:58] 2026-01-11 00:55:28,314 | INFO     | did not find any defunct processes belonging to 777575
[2026-01-10 19:55:58] 2026-01-11 00:55:28,314 | INFO     | ready for new job
[2026-01-10 19:55:58] 2026-01-11 00:55:28,314 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 19:55:58] 2026-01-11 00:55:28,315 | INFO     | ***************************************
[2026-01-10 19:55:58] 2026-01-11 00:55:28,315 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 19:55:58] 2026-01-11 00:55:28,315 | INFO     | ***************************************
[2026-01-10 19:55:58] 2026-01-11 00:55:28,315 | INFO     | 
[2026-01-10 19:55:58] 2026-01-11 00:55:28,318 | INFO     | architecture information:
[2026-01-10 19:55:58] 2026-01-11 00:55:28,319 | INFO     | executing command: cat /etc/os-release
[2026-01-10 19:55:58] 2026-01-11 00:55:28,333 | INFO     | cat /etc/os-release:
[2026-01-10 19:55:58] NAME="CentOS Linux"
[2026-01-10 19:55:58] VERSION="7 (Core)"
[2026-01-10 19:55:58] ID="centos"
[2026-01-10 19:55:58] ID_LIKE="rhel fedora"
[2026-01-10 19:55:58] VERSION_ID="7"
[2026-01-10 19:55:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 19:55:58] ANSI_COLOR="0;31"
[2026-01-10 19:55:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 19:55:58] HOME_URL="https://www.centos.org/"
[2026-01-10 19:55:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 19:55:58] 
[2026-01-10 19:55:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 19:55:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 19:55:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 19:55:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 19:55:58] 
[2026-01-10 19:55:58] 2026-01-11 00:55:28,333 | INFO     | ***************************************
[2026-01-10 19:55:58] 2026-01-11 00:55:28,836 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-10 19:55:58] 2026-01-11 00:55:28,859 | INFO     | sufficient remaining disk space (172601901056 B)
[2026-01-10 19:55:58] 2026-01-11 00:55:28,859 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 19:55:58] 2026-01-11 00:55:28,859 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 19:55:58] 2026-01-11 00:55:28,859 | INFO     | update_server=False
[2026-01-10 19:55:58] 2026-01-11 00:55:28,859 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 19:55:58] 2026-01-11 00:55:28,859 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 19:55:58] 2026-01-11 00:55:28,860 | INFO     | aborting loop
[2026-01-10 19:55:58] 2026-01-11 00:55:29,331 | INFO     | all data control threads have been joined
[2026-01-10 19:55:58] 2026-01-11 00:55:29,703 | INFO     | all payload control threads have been joined
[2026-01-10 19:55:58] 2026-01-11 00:55:29,819 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 19:55:58] 2026-01-11 00:55:29,864 | INFO     | [job] retrieve thread has finished
[2026-01-10 19:55:58] 2026-01-11 00:55:29,865 | INFO     | [job] job monitor thread has finished
[2026-01-10 19:55:58] 2026-01-11 00:55:29,970 | INFO     | [payload] validate_post thread has finished
[2026-01-10 19:55:58] 2026-01-11 00:55:30,284 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 19:55:58] 2026-01-11 00:55:30,330 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 19:55:58] 2026-01-11 00:55:30,336 | INFO     | [data] control thread has finished
[2026-01-10 19:55:58] 2026-01-11 00:55:30,408 | INFO     | all job control threads have been joined
[2026-01-10 19:55:58] 2026-01-11 00:55:30,522 | INFO     | [data] copytool_in thread has finished
[2026-01-10 19:55:58] 2026-01-11 00:55:30,606 | INFO     | [payload] failed_post thread has finished
[2026-01-10 19:55:58] 2026-01-11 00:55:30,705 | INFO     | [payload] control thread has finished
[2026-01-10 19:55:58] 2026-01-11 00:55:30,717 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 19:55:58] 2026-01-11 00:55:30,721 | INFO     | [job] validate thread has finished
[2026-01-10 19:55:58] 2026-01-11 00:55:31,296 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 19:55:58] 2026-01-11 00:55:31,413 | INFO     | [job] control thread has finished
[2026-01-10 19:55:58] 2026-01-11 00:55:31,654 | INFO     | [monitor] cgroup control has ended
[2026-01-10 19:55:58] 2026-01-11 00:55:31,661 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 19:55:58] 2026-01-11 00:55:31,824 | INFO     | [data] copytool_out thread has finished
[2026-01-10 19:55:58] 2026-01-11 00:55:32,301 | INFO     | [job] queue monitor thread has finished
[2026-01-10 19:55:58] 2026-01-11 00:55:35,667 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 19:55:58] 2026-01-11 00:55:39,488 | INFO     | job.realtimelogging is not enabled
[2026-01-10 19:55:58] 2026-01-11 00:55:40,493 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 19:55:58] 2026-01-11 00:55:41,151 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140433650190144)>', '<ExcThread(monitor, started 140432931542784)>']
[2026-01-10 19:55:58] 2026-01-11 00:55:46,176 | INFO     | all workflow threads have been joined
[2026-01-10 19:55:58] 2026-01-11 00:55:46,176 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 19:55:58] 2026-01-11 00:55:46,176 | INFO     | traces error code: 0
[2026-01-10 19:55:58] 2026-01-11 00:55:46,177 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 19:55:58] 2026-01-11 00:55:58,515 | INFO     | PID=739980 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 19:55:58] 2026-01-11 00:55:58,517 | INFO     | .. there are 30 such processes running
[2026-01-10 19:55:58] 2026-01-11 00:55:58,517 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 19:55:58] 2026-01-11 00:55:58,518 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 19:55:58] 2026-01-11 00:55:58,518 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 19:55:58] 2026-01-11 00:55:58,518 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 19:55:58] 2026-01-11 00:55:58,518 | INFO     | [monitor] control thread has ended
[2026-01-10 19:55:58] 2026-01-11 00:55:58,626 [wrapper] ==== pilot stdout END ====
[2026-01-10 19:55:58] 2026-01-11 00:55:58,630 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 19:55:58] 2026-01-11 00:55:58,634 [wrapper] pilotpid: 739980
[2026-01-10 19:55:58] 2026-01-11 00:55:58,638 [wrapper] Pilot exit status: 0
[2026-01-10 19:55:58] 2026-01-11 00:55:58,650 [wrapper] pandaids: 6965803180
[2026-01-10 19:55:58] 2026-01-11 00:55:58,763 [wrapper] cleanup supervisor_pilot 1053399 739981
[2026-01-10 19:55:58] 2026-01-11 00:55:58,767 [wrapper] Test setup, not cleaning
[2026-01-10 19:55:58] 2026-01-11 00:55:58,769 [wrapper] apfmon messages muted
[2026-01-10 19:55:58] 2026-01-11 00:55:58,772 [wrapper] ==== wrapper stdout END ====
[2026-01-10 19:55:58] 2026-01-11 00:55:58,776 [wrapper] ==== wrapper stderr END ====
[2026-01-10 19:55:58]  *** Error codes and diagnostics ***
[2026-01-10 19:55:58]     "exeErrorCode": 0,
[2026-01-10 19:55:58]     "exeErrorDiag": "",
[2026-01-10 19:55:58]     "pilotErrorCode": 0,
[2026-01-10 19:55:58]     "pilotErrorDiag": "",
[2026-01-10 19:55:58]  *** Listing of results directory ***
[2026-01-10 19:55:58] total 432984
[2026-01-10 19:55:58] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 18:00 pilot3.tar.gz
[2026-01-10 19:55:58] -rwx------. 1 boincer umatlas     36322 Jan 10 18:05 runpilot2-wrapper.sh
[2026-01-10 19:55:58] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 18:05 queuedata.json
[2026-01-10 19:55:58] -rw-r--r--. 1 boincer umatlas       100 Jan 10 18:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 19:55:58] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 18:52 run_atlas
[2026-01-10 19:55:58] -rw-r--r--. 1 boincer umatlas       105 Jan 10 18:52 job.xml
[2026-01-10 19:55:58] -rw-r--r--. 2 boincer umatlas 392017497 Jan 10 18:52 EVNT.47962006._000005.pool.root.1
[2026-01-10 19:55:58] -rw-r--r--. 2 boincer umatlas    592612 Jan 10 18:52 input.tar.gz
[2026-01-10 19:55:58] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 18:52 start_atlas.sh
[2026-01-10 19:55:58] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 18:52 shared
[2026-01-10 19:55:58] -rw-r--r--. 1 boincer umatlas         0 Jan 10 18:52 boinc_lockfile
[2026-01-10 19:55:58] -rw-r--r--. 1 boincer umatlas      2888 Jan 10 18:52 pandaJob.out
[2026-01-10 19:55:58] -rw-------. 1 boincer umatlas        57 Jan 10 18:52 setup.sh.local
[2026-01-10 19:55:58] -rw-------. 1 boincer umatlas    989548 Jan 10 18:53 agis_schedconf.cvmfs.json
[2026-01-10 19:55:58] -rw-------. 1 boincer umatlas   1516240 Jan 10 18:53 agis_ddmendpoints.agis.ALL.json
[2026-01-10 19:55:58] drwx------. 5 boincer umatlas      4096 Jan 10 18:53 pilot3
[2026-01-10 19:55:58] -rw-r--r--. 1 boincer umatlas       528 Jan 10 19:47 boinc_task_state.xml
[2026-01-10 19:55:58] -rw-r--r--. 1 boincer umatlas      7170 Jan 10 19:54 init_data.xml
[2026-01-10 19:55:58] -rw-------. 1 boincer umatlas  44017545 Jan 10 19:55 HITS.47962010._002632.pool.root.1
[2026-01-10 19:55:58] -rw-------. 1 boincer umatlas      1036 Jan 10 19:55 memory_monitor_summary.json
[2026-01-10 19:55:58] -rw-------. 1 boincer umatlas   1171701 Jan 10 19:55 log.47962010._002632.job.log.tgz.1
[2026-01-10 19:55:58] -rw-------. 1 boincer umatlas      8512 Jan 10 19:55 heartbeat.json
[2026-01-10 19:55:58] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 19:55 boinc_mmap_file
[2026-01-10 19:55:58] -rw-r--r--. 1 boincer umatlas        26 Jan 10 19:55 wrapper_checkpoint.txt
[2026-01-10 19:55:58] -rw-------. 1 boincer umatlas        95 Jan 10 19:55 pilot_heartbeat.json
[2026-01-10 19:55:58] -rw-------. 1 boincer umatlas       822 Jan 10 19:55 pilotlog.txt
[2026-01-10 19:55:58] -rw-------. 1 boincer umatlas    539398 Jan 10 19:55 log.47962010._002632.job.log.1
[2026-01-10 19:55:58] -rw-------. 1 boincer umatlas       353 Jan 10 19:55 output.list
[2026-01-10 19:55:58] -rw-r--r--. 1 boincer umatlas       620 Jan 10 19:55 runtime_log
[2026-01-10 19:55:58] -rw-------. 1 boincer umatlas   1730560 Jan 10 19:55 result.tar.gz
[2026-01-10 19:55:58] -rw-r--r--. 1 boincer umatlas      9337 Jan 10 19:55 runtime_log.err
[2026-01-10 19:55:58] -rw-------. 1 boincer umatlas       651 Jan 10 19:55 ggJNDm9Bxy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8wmKDm8LldLm.diag
[2026-01-10 19:55:58] -rw-r--r--. 1 boincer umatlas     21843 Jan 10 19:55 stderr.txt
[2026-01-10 19:55:58] HITS file was successfully produced:
[2026-01-10 19:55:58] -rw-------. 1 boincer umatlas 44017545 Jan 10 19:55 shared/HITS.pool.root.1
[2026-01-10 19:55:58]  *** Contents of shared directory: ***
[2026-01-10 19:55:58] total 428112
[2026-01-10 19:55:58] -rw-r--r--. 2 boincer umatlas 392017497 Jan 10 18:52 ATLAS.root_0
[2026-01-10 19:55:58] -rw-r--r--. 2 boincer umatlas    592612 Jan 10 18:52 input.tar.gz
[2026-01-10 19:55:58] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 18:52 start_atlas.sh
[2026-01-10 19:55:58] -rw-------. 1 boincer umatlas  44017545 Jan 10 19:55 HITS.pool.root.1
[2026-01-10 19:55:58] -rw-------. 1 boincer umatlas   1730560 Jan 10 19:55 result.tar.gz
19:56:00 (725697): run_atlas exited; CPU time 8299.348724
19:56:00 (725697): called boinc_finish(0)

</stderr_txt>
]]>

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