Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:19:51 (3004859): wrapper (7.7.26015): starting
04:19:51 (3004859): wrapper: running run_atlas (--nthreads 4)
[2026-01-11 04:19:51] Arguments: --nthreads 4
[2026-01-11 04:19:51] Threads: 4
[2026-01-11 04:19:51] Checking for CVMFS
[2026-01-11 04:19:51] No cvmfs_config command found, will try listing directly
[2026-01-11 04:19:51] CVMFS is ok
[2026-01-11 04:19:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 04:19:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 04:19:51] Further information can be found at the LHC@home message board.
[2026-01-11 04:19:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 04:19:51] Checking for apptainer binary...
[2026-01-11 04:19:51] which: no apptainer in ((null))
[2026-01-11 04:19:51] apptainer is not installed, using version from CVMFS
[2026-01-11 04:19:51] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 04:19:52] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut30.grid.cesnet.cz
[2026-01-11 04:19:52] apptainer works
[2026-01-11 04:19:52] Set ATHENA_PROC_NUMBER=4
[2026-01-11 04:19:52] Set ATHENA_CORE_NUMBER=4
[2026-01-11 04:19:52] Starting ATLAS job with PandaID=6965809128
[2026-01-11 04:19:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 06:06:27]  *** The last 200 lines of the pilot log: ***
[2026-01-11 06:06:27]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-11 06:06:27]  replicas=None
[2026-01-11 06:06:27]  scope=mc16_13TeV
[2026-01-11 06:06:27]  status=None
[2026-01-11 06:06:27]  status_code=0
[2026-01-11 06:06:27]  storage_token=
[2026-01-11 06:06:27]  surl=/scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6965809128/log.47962010._002926.job.log.tgz.1
[2026-01-11 06:06:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/a4/e0/log.47962010._002926.job.log.tgz.1
[2026-01-11 06:06:27]  workdir=None
[2026-01-11 06:06:27] ]
[2026-01-11 06:06:27] 2026-01-11 04:53:03,185 | INFO     | transferring file log.47962010._002926.job.log.tgz.1 from /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6965809128/log.47962010._002926.job.log.tgz.1 to /scratch/b
[2026-01-11 06:06:27] 2026-01-11 04:53:03,185 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6965809128/log.47962010._002926.job.log.tgz.1 /scratch/boinc/var/slot40/slots/0/lo
[2026-01-11 06:06:27] 2026-01-11 04:53:03,203 | INFO     | adding to output.list: log.47962010._002926.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/a4/e0/log.47962010._002926.job.log.tgz.
[2026-01-11 06:06:27] 2026-01-11 04:53:03,205 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-11 06:06:27] 2026-01-11 04:53:03,205 | INFO     | summary of transferred files:
[2026-01-11 06:06:27] 2026-01-11 04:53:03,205 | INFO     |  -- lfn=log.47962010._002926.job.log.tgz.1, status_code=0, status=transferred
[2026-01-11 06:06:27] 2026-01-11 04:53:03,205 | INFO     | stage-out finished correctly
[2026-01-11 06:06:27] 2026-01-11 04:53:03,725 | INFO     | time since job start (5579s) is within the limit (349056.0s)
[2026-01-11 06:06:27] 2026-01-11 04:53:05,162 | INFO     | PID=3008942 has CPU usage=10.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-11 06:06:27] 2026-01-11 04:53:05,162 | INFO     | .. there are 3 such processes running
[2026-01-11 06:06:27] 2026-01-11 04:53:05,743 | WARNING  | process 3016297 can no longer be monitored (due to stat problems) - aborting
[2026-01-11 06:06:27] 2026-01-11 04:53:05,744 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6965809128/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 06:06:27] 2026-01-11 04:53:05,940 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-11 06:06:27] 2026-01-11 04:53:06,163 | INFO     | time since job start (5582s) is within the limit (349056.0s)
[2026-01-11 06:06:27] 2026-01-11 04:53:06,188 | INFO     | number of running child processes to parent process 3016297: 1
[2026-01-11 06:06:27] 2026-01-11 04:53:06,188 | INFO     | maximum number of monitored processes: 9
[2026-01-11 06:06:27] 2026-01-11 04:53:06,220 | INFO     | job 6965809128 has state=finished
[2026-01-11 06:06:27] 2026-01-11 04:53:06,220 | INFO     | preparing for final server update for job 6965809128 in state='finished'
[2026-01-11 06:06:27] 2026-01-11 04:53:06,221 | INFO     | this job has now completed (state=finished)
[2026-01-11 06:06:27] 2026-01-11 04:53:06,221 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-11 06:06:27] 2026-01-11 04:53:06,221 | INFO     | log transfer has been attempted: DONE
[2026-01-11 06:06:27] 2026-01-11 04:53:06,221 | INFO     | job 6965809128 has finished - writing final server update
[2026-01-11 06:06:27] 2026-01-11 04:53:06,222 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1931052/.job.ad'
[2026-01-11 06:06:27] 2026-01-11 04:53:06,222 | INFO     | total number of processed events: 50 (read)
[2026-01-11 06:06:27] 2026-01-11 04:53:06,223 | INFO     | executing command: lscpu
[2026-01-11 06:06:27] 2026-01-11 04:53:06,269 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 06:06:27] 2026-01-11 04:53:08,169 | INFO     | time since job start (5584s) is within the limit (349056.0s)
[2026-01-11 06:06:27] 2026-01-11 04:53:08,691 | INFO     | monitor loop #411: job 0:6965809128 is in state 'finished'
[2026-01-11 06:06:27] 2026-01-11 04:53:08,692 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 06:06:27] 2026-01-11 04:53:10,172 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-11 06:06:27] 2026-01-11 04:53:10,174 | INFO     | time since job start (5586s) is within the limit (349056.0s)
[2026-01-11 06:06:27] 2026-01-11 04:53:10,181 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2554.9897999999994
[2026-01-11 06:06:27] 2026-01-11 04:53:10,190 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6965809128/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 06:06:27] 2026-01-11 04:53:10,191 | INFO     | extracted standard info from prmon json
[2026-01-11 06:06:27] 2026-01-11 04:53:10,191 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 06:06:27] 2026-01-11 04:53:10,191 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 06:06:27] 2026-01-11 04:53:10,194 | INFO     | fitting pss+swap vs Time
[2026-01-11 06:06:27] 2026-01-11 04:53:10,195 | INFO     | sum of square deviations: 183761585.0
[2026-01-11 06:06:27] 2026-01-11 04:53:10,195 | INFO     | sum of deviations: -6083149024.5
[2026-01-11 06:06:27] 2026-01-11 04:53:10,195 | INFO     | mean x: 1768104466.5
[2026-01-11 06:06:27] 2026-01-11 04:53:10,196 | INFO     | mean y: 2253027.75
[2026-01-11 06:06:27] 2026-01-11 04:53:10,196 | INFO     | intersect: 58532674174.27836
[2026-01-11 06:06:27] 2026-01-11 04:53:10,196 | INFO     | chi2: 0.11130763738699867
[2026-01-11 06:06:27] 2026-01-11 04:53:10,196 | INFO     | current memory leak: -33.10 B/s (using 84 data points, chi2=0.11)
[2026-01-11 06:06:27] 2026-01-11 04:53:10,197 | INFO     | could have reported an average CPU frequency of 2499 MHz (7 samples)
[2026-01-11 06:06:27] 2026-01-11 04:53:10,197 | INFO     | ..............................
[2026-01-11 06:06:27] 2026-01-11 04:53:10,197 | INFO     | . Timing measurements:
[2026-01-11 06:06:27] 2026-01-11 04:53:10,197 | INFO     | . get job = 0 s
[2026-01-11 06:06:27] 2026-01-11 04:53:10,197 | INFO     | . initial setup = 1 s
[2026-01-11 06:06:27] 2026-01-11 04:53:10,198 | INFO     | . payload setup = 6 s
[2026-01-11 06:06:27] 2026-01-11 04:53:10,198 | INFO     | . stage-in = 0 s
[2026-01-11 06:06:27] 2026-01-11 04:53:10,198 | INFO     | . payload execution = 5552 s
[2026-01-11 06:06:27] 2026-01-11 04:53:10,198 | INFO     | . stage-out = 0 s
[2026-01-11 06:06:27] 2026-01-11 04:53:10,198 | INFO     | . log creation = 0 s
[2026-01-11 06:06:27] 2026-01-11 04:53:10,198 | INFO     | ..............................
[2026-01-11 06:06:27] 2026-01-11 04:53:10,314 | INFO     | 
[2026-01-11 06:06:27] 2026-01-11 04:53:10,314 | INFO     | job summary report
[2026-01-11 06:06:27] 2026-01-11 04:53:10,314 | INFO     | --------------------------------------------------
[2026-01-11 06:06:27] 2026-01-11 04:53:10,314 | INFO     | PanDA job id: 6965809128
[2026-01-11 06:06:27] 2026-01-11 04:53:10,314 | INFO     | task id: 47962010
[2026-01-11 06:06:27] 2026-01-11 04:53:10,314 | INFO     | errors: (none)
[2026-01-11 06:06:27] 2026-01-11 04:53:10,315 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 06:06:27] 2026-01-11 04:53:10,315 | INFO     | pilot state: finished 
[2026-01-11 06:06:27] 2026-01-11 04:53:10,315 | INFO     | transexitcode: 0
[2026-01-11 06:06:27] 2026-01-11 04:53:10,315 | INFO     | exeerrorcode: 0
[2026-01-11 06:06:27] 2026-01-11 04:53:10,315 | INFO     | exeerrordiag: 
[2026-01-11 06:06:27] 2026-01-11 04:53:10,315 | INFO     | exitcode: 0
[2026-01-11 06:06:27] 2026-01-11 04:53:10,315 | INFO     | exitmsg: OK
[2026-01-11 06:06:27] 2026-01-11 04:53:10,315 | INFO     | cpuconsumptiontime: 20542 s
[2026-01-11 06:06:27] 2026-01-11 04:53:10,316 | INFO     | nevents: 50
[2026-01-11 06:06:27] 2026-01-11 04:53:10,316 | INFO     | neventsw: 0
[2026-01-11 06:06:27] 2026-01-11 04:53:10,316 | INFO     | pid: 3016297
[2026-01-11 06:06:27] 2026-01-11 04:53:10,316 | INFO     | pgrp: 3016297
[2026-01-11 06:06:27] 2026-01-11 04:53:10,316 | INFO     | corecount: 4
[2026-01-11 06:06:27] 2026-01-11 04:53:10,316 | INFO     | event service: False
[2026-01-11 06:06:27] 2026-01-11 04:53:10,316 | INFO     | sizes: {0: 2284578, 1: 2284578, 5: 2284868, 11: 2284924, 5562: 2312240, 5563: 2321256, 5566: 2321440, 5570: 2321686}
[2026-01-11 06:06:27] 2026-01-11 04:53:10,316 | INFO     | --------------------------------------------------
[2026-01-11 06:06:27] 2026-01-11 04:53:10,317 | INFO     | 
[2026-01-11 06:06:27] 2026-01-11 04:53:10,317 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2026-01-11 06:06:27] 2026-01-11 04:53:10,337 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 06:06:27] 2026-01-11 04:53:10,338 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 06:06:27] 2026-01-11 04:53:10,338 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 06:06:27] 2026-01-11 04:53:10,338 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 06:06:27] 2026-01-11 04:53:10,338 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 06:06:27] 2026-01-11 04:53:10,338 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 06:06:27] 2026-01-11 04:53:10,339 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 06:06:27] 2026-01-11 04:53:10,339 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 06:06:27] 2026-01-11 04:53:10,339 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 06:06:27] 2026-01-11 04:53:10,339 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 06:06:27] 2026-01-11 04:53:10,339 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 06:06:27] 2026-01-11 04:53:10,339 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 06:06:27] 2026-01-11 04:53:10,339 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 06:06:27] 2026-01-11 04:53:10,339 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 06:06:27] 2026-01-11 04:53:10,340 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 06:06:27] 2026-01-11 04:53:10,340 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 06:06:27] 2026-01-11 04:53:10,340 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 06:06:27] 2026-01-11 04:53:10,340 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 06:06:27] 2026-01-11 04:53:10,340 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 06:06:27] 2026-01-11 04:53:10,340 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 06:06:27] 2026-01-11 04:53:10,341 | INFO     | job 6965809128 has completed (purged errors)
[2026-01-11 06:06:27] 2026-01-11 04:53:10,341 | INFO     | overall cleanup function is called
[2026-01-11 06:06:27] 2026-01-11 04:53:11,353 | INFO     | --- collectZombieJob: --- 10, [3016297]
[2026-01-11 06:06:27] 2026-01-11 04:53:11,353 | INFO     | zombie collector waiting for pid 3016297
[2026-01-11 06:06:27] 2026-01-11 04:53:11,354 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 06:06:27] 2026-01-11 04:53:11,354 | INFO     | collected zombie processes
[2026-01-11 06:06:27] 2026-01-11 04:53:11,354 | INFO     | will attempt to kill all subprocesses of pid=3016297
[2026-01-11 06:06:27] 2026-01-11 04:53:11,679 | INFO     | process IDs to be killed: [3016297] (in reverse order)
[2026-01-11 06:06:27] 2026-01-11 04:53:11,762 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 06:06:27] 2026-01-11 04:53:11,762 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 06:06:27] 2026-01-11 04:53:11,771 | INFO     | did not find any defunct processes belonging to 3016297
[2026-01-11 06:06:27] 2026-01-11 04:53:11,779 | INFO     | did not find any defunct processes belonging to 3016297
[2026-01-11 06:06:27] 2026-01-11 04:53:11,780 | INFO     | ready for new job
[2026-01-11 06:06:27] 2026-01-11 04:53:11,780 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 06:06:27] 2026-01-11 04:53:11,782 | INFO     | ***************************************
[2026-01-11 06:06:27] 2026-01-11 04:53:11,782 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 06:06:27] 2026-01-11 04:53:11,782 | INFO     | ***************************************
[2026-01-11 06:06:27] 2026-01-11 04:53:11,782 | INFO     | 
[2026-01-11 06:06:27] 2026-01-11 04:53:11,785 | INFO     | architecture information:
[2026-01-11 06:06:27] 2026-01-11 04:53:11,785 | INFO     | executing command: cat /etc/os-release
[2026-01-11 06:06:27] 2026-01-11 04:53:11,799 | INFO     | cat /etc/os-release:
[2026-01-11 06:06:27] NAME="CentOS Linux"
[2026-01-11 06:06:27] VERSION="7 (Core)"
[2026-01-11 06:06:27] ID="centos"
[2026-01-11 06:06:27] ID_LIKE="rhel fedora"
[2026-01-11 06:06:27] VERSION_ID="7"
[2026-01-11 06:06:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 06:06:27] ANSI_COLOR="0;31"
[2026-01-11 06:06:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 06:06:27] HOME_URL="https://www.centos.org/"
[2026-01-11 06:06:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 06:06:27] 
[2026-01-11 06:06:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 06:06:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 06:06:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 06:06:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 06:06:27] 
[2026-01-11 06:06:27] 2026-01-11 04:53:11,800 | INFO     | ***************************************
[2026-01-11 06:06:27] 2026-01-11 04:53:12,303 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2026-01-11 06:06:27] 2026-01-11 04:53:12,319 | INFO     | sufficient remaining disk space (1677676511232 B)
[2026-01-11 06:06:27] 2026-01-11 04:53:12,320 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 06:06:27] 2026-01-11 04:53:12,320 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 06:06:27] 2026-01-11 04:53:12,320 | INFO     | update_server=False
[2026-01-11 06:06:27] 2026-01-11 04:53:12,320 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 06:06:27] 2026-01-11 04:53:12,321 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 06:06:27] 2026-01-11 04:53:12,321 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 06:06:27] 2026-01-11 04:53:12,321 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 06:06:27] 2026-01-11 04:53:12,322 | INFO     | aborting loop
[2026-01-11 06:06:27] 2026-01-11 04:53:12,823 | INFO     | all job control threads have been joined
[2026-01-11 06:06:27] 2026-01-11 04:53:13,045 | INFO     | [monitor] cgroup control has ended
[2026-01-11 06:06:27] 2026-01-11 04:53:13,326 | INFO     | [job] retrieve thread has finished
[2026-01-11 06:06:27] 2026-01-11 04:53:13,327 | INFO     | [job] job monitor thread has finished
[2026-01-11 06:06:27] 2026-01-11 04:53:13,327 | INFO     | all data control threads have been joined
[2026-01-11 06:06:27] 2026-01-11 04:53:13,614 | INFO     | all payload control threads have been joined
[2026-01-11 06:06:27] 2026-01-11 04:53:13,759 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 06:06:27] 2026-01-11 04:53:13,789 | INFO     | [job] validate thread has finished
[2026-01-11 06:06:27] 2026-01-11 04:53:13,828 | INFO     | [job] control thread has finished
[2026-01-11 06:06:27] 2026-01-11 04:53:13,835 | INFO     | [data] copytool_in thread has finished
[2026-01-11 06:06:27] 2026-01-11 04:53:13,978 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 06:06:27] 2026-01-11 04:53:14,195 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 06:06:27] 2026-01-11 04:53:14,327 | INFO     | [data] copytool_out thread has finished
[2026-01-11 06:06:27] 2026-01-11 04:53:14,332 | INFO     | [data] control thread has finished
[2026-01-11 06:06:27] 2026-01-11 04:53:14,570 | INFO     | [payload] validate_post thread has finished
[2026-01-11 06:06:27] 2026-01-11 04:53:14,620 | INFO     | [payload] control thread has finished
[2026-01-11 06:06:27] 2026-01-11 04:53:14,727 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 06:06:27] 2026-01-11 04:53:14,808 | INFO     | [payload] failed_post thread has finished
[2026-01-11 06:06:27] 2026-01-11 04:53:15,324 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 06:06:27] 2026-01-11 04:53:16,327 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 06:06:27] 2026-01-11 04:53:16,329 | INFO     | [job] queue monitor thread has finished
[2026-01-11 06:06:27] 2026-01-11 04:53:16,785 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22413958600512)>', '<ExcThread(monitor, started 22413710407424)>']
[2026-01-11 06:06:27] 2026-01-11 04:53:21,789 | INFO     | all workflow threads have been joined
[2026-01-11 06:06:27] 2026-01-11 04:53:21,789 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 06:06:27] 2026-01-11 04:53:21,789 | INFO     | traces error code: 0
[2026-01-11 06:06:27] 2026-01-11 04:53:21,790 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 06:06:27] 2026-01-11 04:53:43,726 | INFO     | PID=3008942 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 06:06:27] 2026-01-11 04:53:43,727 | INFO     | .. there are 3 such processes running
[2026-01-11 06:06:27] 2026-01-11 04:53:43,727 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 06:06:27] 2026-01-11 04:53:43,727 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 06:06:27] 2026-01-11 04:53:43,727 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 06:06:27] 2026-01-11 04:53:43,728 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 06:06:27] 2026-01-11 04:53:43,728 | INFO     | [monitor] control thread has ended
[2026-01-11 06:06:27] 2026-01-11 04:53:43,854 [wrapper] ==== pilot stdout END ====
[2026-01-11 06:06:27] 2026-01-11 04:53:43,857 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 06:06:27] 2026-01-11 04:53:43,859 [wrapper] pilotpid: 3008942
[2026-01-11 06:06:27] 2026-01-11 04:53:43,862 [wrapper] Pilot exit status: 0
[2026-01-11 06:06:27] 2026-01-11 04:53:43,871 [wrapper] pandaids: 6965809128
[2026-01-11 06:06:27] 2026-01-11 04:53:43,923 [wrapper] cleanup supervisor_pilot 3074569 3008943
[2026-01-11 06:06:27] 2026-01-11 04:53:43,926 [wrapper] Test setup, not cleaning
[2026-01-11 06:06:27] 2026-01-11 04:53:43,929 [wrapper] apfmon messages muted
[2026-01-11 06:06:27] 2026-01-11 04:53:43,931 [wrapper] ==== wrapper stdout END ====
[2026-01-11 06:06:27] 2026-01-11 04:53:43,933 [wrapper] ==== wrapper stderr END ====
[2026-01-11 06:06:27]  *** Error codes and diagnostics ***
[2026-01-11 06:06:27]     "exeErrorCode": 0,
[2026-01-11 06:06:27]     "exeErrorDiag": "",
[2026-01-11 06:06:27]     "pilotErrorCode": 0,
[2026-01-11 06:06:27]     "pilotErrorDiag": "",
[2026-01-11 06:06:27]  *** Listing of results directory ***
[2026-01-11 06:06:27] total 435880
[2026-01-11 06:06:27] -rw-r--r-- 1 boinc boinc    579449 Jan 11 00:00 pilot3.tar.gz
[2026-01-11 06:06:27] -rwx------ 1 boinc boinc     36322 Jan 11 00:17 runpilot2-wrapper.sh
[2026-01-11 06:06:27] -rw-r--r-- 1 boinc boinc      5112 Jan 11 00:17 queuedata.json
[2026-01-11 06:06:27] -rw-r--r-- 1 boinc boinc       100 Jan 11 04:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 06:06:27] -rwxr-xr-x 1 boinc boinc      7986 Jan 11 04:19 run_atlas
[2026-01-11 06:06:27] -rw-r--r-- 1 boinc boinc       105 Jan 11 04:19 job.xml
[2026-01-11 06:06:27] -rw-r--r-- 2 boinc boinc 394279427 Jan 11 04:19 EVNT.47962006._000043.pool.root.1
[2026-01-11 06:06:27] -rw-r--r-- 1 boinc boinc      6425 Jan 11 04:19 init_data.xml
[2026-01-11 06:06:27] -rw-r--r-- 2 boinc boinc     15847 Jan 11 04:19 start_atlas.sh
[2026-01-11 06:06:27] drwxrwx--x 2 boinc boinc      4096 Jan 11 04:19 shared
[2026-01-11 06:06:27] -rw-r--r-- 2 boinc boinc    592603 Jan 11 04:19 input.tar.gz
[2026-01-11 06:06:27] -rw-r--r-- 1 boinc boinc         0 Jan 11 04:19 boinc_lockfile
[2026-01-11 06:06:27] -rw-r--r-- 1 boinc boinc      2888 Jan 11 04:19 pandaJob.out
[2026-01-11 06:06:27] -rw------- 1 boinc boinc    989548 Jan 11 04:20 agis_schedconf.cvmfs.json
[2026-01-11 06:06:27] -rw------- 1 boinc boinc   1516240 Jan 11 04:20 agis_ddmendpoints.agis.ALL.json
[2026-01-11 06:06:27] drwx------ 5 boinc boinc      4096 Jan 11 04:20 pilot3
[2026-01-11 06:06:27] -rw-r--r-- 1 boinc boinc       528 Jan 11 05:46 boinc_task_state.xml
[2026-01-11 06:06:27] -rw------- 1 boinc boinc  44928157 Jan 11 05:52 HITS.47962010._002926.pool.root.1
[2026-01-11 06:06:27] -rw------- 1 boinc boinc      1033 Jan 11 05:52 memory_monitor_summary.json
[2026-01-11 06:06:27] -rw------- 1 boinc boinc    779567 Jan 11 05:53 log.47962010._002926.job.log.tgz.1
[2026-01-11 06:06:27] -rw------- 1 boinc boinc        95 Jan 11 05:53 pilot_heartbeat.json
[2026-01-11 06:06:27] -rw------- 1 boinc boinc      8585 Jan 11 05:53 heartbeat.json
[2026-01-11 06:06:27] -rw------- 1 boinc boinc       822 Jan 11 05:53 pilotlog.txt
[2026-01-11 06:06:27] -rw------- 1 boinc boinc    832701 Jan 11 05:53 log.47962010._002926.job.log.1
[2026-01-11 06:06:27] -rw------- 1 boinc boinc       353 Jan 11 05:53 output.list
[2026-01-11 06:06:27] -rw-r--r-- 1 boinc boinc       620 Jan 11 05:53 runtime_log
[2026-01-11 06:06:27] -rw------- 1 boinc boinc   1628160 Jan 11 05:53 result.tar.gz
[2026-01-11 06:06:27] -rw-r--r-- 1 boinc boinc      9205 Jan 11 05:53 runtime_log.err
[2026-01-11 06:06:27] -rw------- 1 boinc boinc       662 Jan 11 05:53 NFvMDm1Nxy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzxmKDmzFAiAn.diag
[2026-01-11 06:06:27] -rw-r--r-- 1 boinc boinc        26 Jan 11 06:06 wrapper_checkpoint.txt
[2026-01-11 06:06:27] -rw-r--r-- 1 boinc boinc      8192 Jan 11 06:06 boinc_mmap_file
[2026-01-11 06:06:27] -rw-r--r-- 1 boinc boinc     21924 Jan 11 06:06 stderr.txt
[2026-01-11 06:06:27] HITS file was successfully produced:
[2026-01-11 06:06:27] -rw------- 1 boinc boinc 44928157 Jan 11 05:52 shared/HITS.pool.root.1
[2026-01-11 06:06:27]  *** Contents of shared directory: ***
[2026-01-11 06:06:27] total 431108
[2026-01-11 06:06:27] -rw-r--r-- 2 boinc boinc 394279427 Jan 11 04:19 ATLAS.root_0
[2026-01-11 06:06:27] -rw-r--r-- 2 boinc boinc     15847 Jan 11 04:19 start_atlas.sh
[2026-01-11 06:06:27] -rw-r--r-- 2 boinc boinc    592603 Jan 11 04:19 input.tar.gz
[2026-01-11 06:06:27] -rw------- 1 boinc boinc  44928157 Jan 11 05:52 HITS.pool.root.1
[2026-01-11 06:06:27] -rw------- 1 boinc boinc   1628160 Jan 11 05:53 result.tar.gz
06:06:29 (3004859): run_atlas exited; CPU time 20691.058371
06:06:29 (3004859): called boinc_finish(0)

</stderr_txt>
]]>

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