Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:31:04 (595995): wrapper (7.7.26015): starting
18:31:04 (595995): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 18:31:04] Arguments: --nthreads 8
[2026-01-10 18:31:04] Threads: 8
[2026-01-10 18:31:04] Checking for CVMFS
[2026-01-10 18:31:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 18:31:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 18:31:05] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 18:31:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 18:31:07] 2.13.3.0 5695 25911 177608 154997 3 88 26245854 40960001 11504 16776704 0 20078326 99.705 17480962 46317 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 18:31:07] CVMFS is ok
[2026-01-10 18:31:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 18:31:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 18:31:07] Further information can be found at the LHC@home message board.
[2026-01-10 18:31:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 18:31:07] Checking for apptainer binary...
[2026-01-10 18:31:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 18:31:07] Running /usr/bin/apptainer --version
[2026-01-10 18:31:07] apptainer version 1.4.5-2.el9
[2026-01-10 18:31:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 18:31:08] c-210-37-4.aglt2.org
[2026-01-10 18:31:08] apptainer works
[2026-01-10 18:31:09] Set ATHENA_PROC_NUMBER=8
[2026-01-10 18:31:09] Set ATHENA_CORE_NUMBER=8
[2026-01-10 18:31:09] Starting ATLAS job with PandaID=6965803451
[2026-01-10 18:31:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 20:09:08]  *** The last 200 lines of the pilot log: ***
[2026-01-10 20:09:08] 2026-01-11 01:07:48,461 | INFO     | time since job start (5757s) is within the limit (349056.0s)
[2026-01-10 20:09:08] 2026-01-11 01:07:50,487 | INFO     | time since job start (5759s) is within the limit (349056.0s)
[2026-01-10 20:09:08] 2026-01-11 01:07:50,824 | INFO     | monitor loop #392: job 0:6965803451 is in state 'finished'
[2026-01-10 20:09:08] 2026-01-11 01:07:50,827 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:09:08] 2026-01-11 01:07:52,494 | INFO     | time since job start (5761s) is within the limit (349056.0s)
[2026-01-10 20:09:08] 2026-01-11 01:07:53,332 | INFO     | monitor loop #393: job 0:6965803451 is in state 'finished'
[2026-01-10 20:09:08] 2026-01-11 01:07:53,332 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:09:08] 2026-01-11 01:07:54,501 | INFO     | time since job start (5763s) is within the limit (349056.0s)
[2026-01-10 20:09:08] 2026-01-11 01:07:55,837 | INFO     | monitor loop #394: job 0:6965803451 is in state 'finished'
[2026-01-10 20:09:08] 2026-01-11 01:07:55,838 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:09:08] 2026-01-11 01:07:56,511 | INFO     | time since job start (5765s) is within the limit (349056.0s)
[2026-01-10 20:09:08] 2026-01-11 01:07:58,345 | INFO     | monitor loop #395: job 0:6965803451 is in state 'finished'
[2026-01-10 20:09:08] 2026-01-11 01:07:58,345 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:09:08] 2026-01-11 01:07:58,518 | INFO     | time since job start (5767s) is within the limit (349056.0s)
[2026-01-10 20:09:08] 2026-01-11 01:08:00,460 | INFO     | PID=600010 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 20:09:08] 2026-01-11 01:08:00,460 | INFO     | .. there are 9 such processes running
[2026-01-10 20:09:08] 2026-01-11 01:08:00,855 | INFO     | monitor loop #396: job 0:6965803451 is in state 'finished'
[2026-01-10 20:09:08] 2026-01-11 01:08:00,857 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:09:08] 2026-01-11 01:08:01,460 | INFO     | time since job start (5770s) is within the limit (349056.0s)
[2026-01-10 20:09:08] 2026-01-11 01:08:03,361 | INFO     | monitor loop #397: job 0:6965803451 is in state 'finished'
[2026-01-10 20:09:08] 2026-01-11 01:08:03,361 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:09:08] 2026-01-11 01:08:03,467 | INFO     | time since job start (5772s) is within the limit (349056.0s)
[2026-01-10 20:09:08] 2026-01-11 01:08:05,476 | INFO     | time since job start (5774s) is within the limit (349056.0s)
[2026-01-10 20:09:08] 2026-01-11 01:08:05,867 | INFO     | monitor loop #398: job 0:6965803451 is in state 'finished'
[2026-01-10 20:09:08] 2026-01-11 01:08:05,872 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:09:08] 2026-01-11 01:08:07,483 | INFO     | time since job start (5776s) is within the limit (349056.0s)
[2026-01-10 20:09:08] 2026-01-11 01:08:08,377 | INFO     | monitor loop #399: job 0:6965803451 is in state 'finished'
[2026-01-10 20:09:08] 2026-01-11 01:08:08,377 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:09:08] 2026-01-11 01:08:09,490 | INFO     | time since job start (5778s) is within the limit (349056.0s)
[2026-01-10 20:09:08] 2026-01-11 01:08:10,882 | INFO     | monitor loop #400: job 0:6965803451 is in state 'finished'
[2026-01-10 20:09:08] 2026-01-11 01:08:10,886 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:09:08] 2026-01-11 01:08:11,500 | INFO     | time since job start (5780s) is within the limit (349056.0s)
[2026-01-10 20:09:08] 2026-01-11 01:08:13,391 | INFO     | monitor loop #401: job 0:6965803451 is in state 'finished'
[2026-01-10 20:09:08] 2026-01-11 01:08:13,391 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:09:08] 2026-01-11 01:08:13,540 | INFO     | time since job start (5782s) is within the limit (349056.0s)
[2026-01-10 20:09:08] 2026-01-11 01:08:15,547 | INFO     | time since job start (5784s) is within the limit (349056.0s)
[2026-01-10 20:09:08] 2026-01-11 01:08:15,809 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-10 20:09:08] 2026-01-11 01:08:15,814 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3150.569946428572
[2026-01-10 20:09:08] 2026-01-11 01:08:15,898 | INFO     | monitor loop #402: job 0:6965803451 is in state 'finished'
[2026-01-10 20:09:08] 2026-01-11 01:08:15,899 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:09:08] 2026-01-11 01:08:15,909 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6965803451/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 20:09:08] 2026-01-11 01:08:15,910 | INFO     | extracted standard info from prmon json
[2026-01-10 20:09:08] 2026-01-11 01:08:15,910 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 20:09:08] 2026-01-11 01:08:15,910 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 20:09:08] 2026-01-11 01:08:15,950 | INFO     | fitting pss+swap vs Time
[2026-01-10 20:09:08] 2026-01-11 01:08:15,950 | INFO     | sum of square deviations: 197347709.7209304
[2026-01-10 20:09:08] 2026-01-11 01:08:15,951 | INFO     | sum of deviations: 4462950410.255823
[2026-01-10 20:09:08] 2026-01-11 01:08:15,951 | INFO     | mean x: 1768090929.1627908
[2026-01-10 20:09:08] 2026-01-11 01:08:15,951 | INFO     | mean y: 2379129.7674418604
[2026-01-10 20:09:08] 2026-01-11 01:08:15,951 | INFO     | intersect: -39982387599.14575
[2026-01-10 20:09:08] 2026-01-11 01:08:15,951 | INFO     | chi2: 4.809337448995863
[2026-01-10 20:09:08] 2026-01-11 01:08:15,951 | INFO     | current memory leak: 22.61 B/s (using 86 data points, chi2=4.81)
[2026-01-10 20:09:08] 2026-01-11 01:08:15,952 | INFO     | could have reported an average CPU frequency of 3128 MHz (7 samples)
[2026-01-10 20:09:08] 2026-01-11 01:08:15,952 | INFO     | ..............................
[2026-01-10 20:09:08] 2026-01-11 01:08:15,952 | INFO     | . Timing measurements:
[2026-01-10 20:09:08] 2026-01-11 01:08:15,952 | INFO     | . get job = 0 s
[2026-01-10 20:09:08] 2026-01-11 01:08:15,952 | INFO     | . initial setup = 6 s
[2026-01-10 20:09:08] 2026-01-11 01:08:15,952 | INFO     | . payload setup = 37 s
[2026-01-10 20:09:08] 2026-01-11 01:08:15,952 | INFO     | . stage-in = 0 s
[2026-01-10 20:09:08] 2026-01-11 01:08:15,952 | INFO     | . payload execution = 5649 s
[2026-01-10 20:09:08] 2026-01-11 01:08:15,952 | INFO     | . stage-out = 4 s
[2026-01-10 20:09:08] 2026-01-11 01:08:15,952 | INFO     | . log creation = 2 s
[2026-01-10 20:09:08] 2026-01-11 01:08:15,952 | INFO     | ..............................
[2026-01-10 20:09:08] 2026-01-11 01:08:16,948 | INFO     | 
[2026-01-10 20:09:08] 2026-01-11 01:08:16,948 | INFO     | job summary report
[2026-01-10 20:09:08] 2026-01-11 01:08:16,948 | INFO     | --------------------------------------------------
[2026-01-10 20:09:08] 2026-01-11 01:08:16,948 | INFO     | PanDA job id: 6965803451
[2026-01-10 20:09:08] 2026-01-11 01:08:16,948 | INFO     | task id: 47962010
[2026-01-10 20:09:08] 2026-01-11 01:08:16,949 | INFO     | errors: (none)
[2026-01-10 20:09:08] 2026-01-11 01:08:16,949 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 20:09:08] 2026-01-11 01:08:16,949 | INFO     | pilot state: finished 
[2026-01-10 20:09:08] 2026-01-11 01:08:16,949 | INFO     | transexitcode: 0
[2026-01-10 20:09:08] 2026-01-11 01:08:16,966 | INFO     | exeerrorcode: 0
[2026-01-10 20:09:08] 2026-01-11 01:08:16,966 | INFO     | exeerrordiag: 
[2026-01-10 20:09:08] 2026-01-11 01:08:16,966 | INFO     | exitcode: 0
[2026-01-10 20:09:08] 2026-01-11 01:08:16,966 | INFO     | exitmsg: OK
[2026-01-10 20:09:08] 2026-01-11 01:08:16,967 | INFO     | cpuconsumptiontime: 13746 s
[2026-01-10 20:09:08] 2026-01-11 01:08:16,967 | INFO     | nevents: 50
[2026-01-10 20:09:08] 2026-01-11 01:08:16,967 | INFO     | neventsw: 0
[2026-01-10 20:09:08] 2026-01-11 01:08:16,967 | INFO     | pid: 608485
[2026-01-10 20:09:08] 2026-01-11 01:08:16,967 | INFO     | pgrp: 608485
[2026-01-10 20:09:08] 2026-01-11 01:08:16,967 | INFO     | corecount: 8
[2026-01-10 20:09:08] 2026-01-11 01:08:16,967 | INFO     | event service: False
[2026-01-10 20:09:08] 2026-01-11 01:08:16,967 | INFO     | sizes: {0: 2284344, 1: 2284599, 12: 2284599, 23: 2284627, 25: 2284917, 34: 2284945, 5691: 2312522, 5698: 2321572, 5733: 2321762}
[2026-01-10 20:09:08] 2026-01-11 01:08:16,967 | INFO     | --------------------------------------------------
[2026-01-10 20:09:08] 2026-01-11 01:08:16,967 | INFO     | 
[2026-01-10 20:09:08] 2026-01-11 01:08:16,967 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-10 20:09:08] 2026-01-11 01:08:17,169 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 20:09:08] 2026-01-11 01:08:17,170 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 20:09:08] 2026-01-11 01:08:17,170 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 20:09:08] 2026-01-11 01:08:17,170 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 20:09:08] 2026-01-11 01:08:17,170 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 20:09:08] 2026-01-11 01:08:17,170 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 20:09:08] 2026-01-11 01:08:17,170 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 20:09:08] 2026-01-11 01:08:17,170 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 20:09:08] 2026-01-11 01:08:17,170 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 20:09:08] 2026-01-11 01:08:17,170 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 20:09:08] 2026-01-11 01:08:17,170 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 20:09:08] 2026-01-11 01:08:17,170 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 20:09:08] 2026-01-11 01:08:17,171 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 20:09:08] 2026-01-11 01:08:17,171 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 20:09:08] 2026-01-11 01:08:17,171 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 20:09:08] 2026-01-11 01:08:17,171 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 20:09:08] 2026-01-11 01:08:17,171 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 20:09:08] 2026-01-11 01:08:17,171 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 20:09:08] 2026-01-11 01:08:17,171 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 20:09:08] 2026-01-11 01:08:17,171 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 20:09:08] 2026-01-11 01:08:17,171 | INFO     | job 6965803451 has completed (purged errors)
[2026-01-10 20:09:08] 2026-01-11 01:08:17,171 | INFO     | overall cleanup function is called
[2026-01-10 20:09:08] 2026-01-11 01:08:18,194 | INFO     | --- collectZombieJob: --- 10, [608485]
[2026-01-10 20:09:08] 2026-01-11 01:08:18,194 | INFO     | zombie collector waiting for pid 608485
[2026-01-10 20:09:08] 2026-01-11 01:08:18,194 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 20:09:08] 2026-01-11 01:08:18,195 | INFO     | collected zombie processes
[2026-01-10 20:09:08] 2026-01-11 01:08:18,195 | INFO     | will attempt to kill all subprocesses of pid=608485
[2026-01-10 20:09:08] 2026-01-11 01:08:19,624 | INFO     | process IDs to be killed: [608485] (in reverse order)
[2026-01-10 20:09:08] 2026-01-11 01:08:19,867 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 20:09:08] 2026-01-11 01:08:19,867 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 20:09:08] 2026-01-11 01:08:19,884 | INFO     | did not find any defunct processes belonging to 608485
[2026-01-10 20:09:08] 2026-01-11 01:08:19,955 | INFO     | did not find any defunct processes belonging to 608485
[2026-01-10 20:09:08] 2026-01-11 01:08:19,955 | INFO     | ready for new job
[2026-01-10 20:09:08] 2026-01-11 01:08:19,955 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 20:09:08] 2026-01-11 01:08:19,957 | INFO     | ***************************************
[2026-01-10 20:09:08] 2026-01-11 01:08:19,957 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 20:09:08] 2026-01-11 01:08:19,957 | INFO     | ***************************************
[2026-01-10 20:09:08] 2026-01-11 01:08:19,957 | INFO     | 
[2026-01-10 20:09:08] 2026-01-11 01:08:19,993 | INFO     | architecture information:
[2026-01-10 20:09:08] 2026-01-11 01:08:20,010 | INFO     | executing command: cat /etc/os-release
[2026-01-10 20:09:08] 2026-01-11 01:08:20,069 | INFO     | cat /etc/os-release:
[2026-01-10 20:09:08] NAME="CentOS Linux"
[2026-01-10 20:09:08] VERSION="7 (Core)"
[2026-01-10 20:09:08] ID="centos"
[2026-01-10 20:09:08] ID_LIKE="rhel fedora"
[2026-01-10 20:09:08] VERSION_ID="7"
[2026-01-10 20:09:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 20:09:08] ANSI_COLOR="0;31"
[2026-01-10 20:09:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 20:09:08] HOME_URL="https://www.centos.org/"
[2026-01-10 20:09:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 20:09:08] 
[2026-01-10 20:09:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 20:09:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 20:09:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 20:09:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 20:09:08] 
[2026-01-10 20:09:08] 2026-01-11 01:08:20,070 | INFO     | ***************************************
[2026-01-10 20:09:08] 2026-01-11 01:08:20,573 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-10 20:09:08] 2026-01-11 01:08:20,617 | INFO     | sufficient remaining disk space (74491887616 B)
[2026-01-10 20:09:08] 2026-01-11 01:08:20,618 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 20:09:08] 2026-01-11 01:08:20,618 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 20:09:08] 2026-01-11 01:08:20,618 | INFO     | update_server=False
[2026-01-10 20:09:08] 2026-01-11 01:08:20,618 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 20:09:08] 2026-01-11 01:08:20,619 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 20:09:08] 2026-01-11 01:08:20,619 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 20:09:08] 2026-01-11 01:08:20,996 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 20:09:08] 2026-01-11 01:08:21,049 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 20:09:08] 2026-01-11 01:08:21,049 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 20:09:08] 2026-01-11 01:08:21,049 | INFO     | will abort loop
[2026-01-10 20:09:08] 2026-01-11 01:08:21,117 | INFO     | all data control threads have been joined
[2026-01-10 20:09:08] 2026-01-11 01:08:21,624 | INFO     | [job] retrieve thread has finished
[2026-01-10 20:09:08] 2026-01-11 01:08:21,676 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 20:09:08] 2026-01-11 01:08:21,919 | INFO     | all payload control threads have been joined
[2026-01-10 20:09:08] 2026-01-11 01:08:22,020 | INFO     | all job control threads have been joined
[2026-01-10 20:09:08] 2026-01-11 01:08:22,064 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 20:09:08] 2026-01-11 01:08:22,069 | INFO     | [job] job monitor thread has finished
[2026-01-10 20:09:08] 2026-01-11 01:08:22,123 | INFO     | [data] control thread has finished
[2026-01-10 20:09:08] 2026-01-11 01:08:22,405 | INFO     | [data] copytool_in thread has finished
[2026-01-10 20:09:08] 2026-01-11 01:08:22,410 | INFO     | [job] validate thread has finished
[2026-01-10 20:09:08] 2026-01-11 01:08:22,636 | INFO     | [data] copytool_out thread has finished
[2026-01-10 20:09:08] 2026-01-11 01:08:22,682 | INFO     | [job] queue monitor thread has finished
[2026-01-10 20:09:08] 2026-01-11 01:08:22,688 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 20:09:08] 2026-01-11 01:08:22,769 | INFO     | [payload] failed_post thread has finished
[2026-01-10 20:09:08] 2026-01-11 01:08:22,925 | INFO     | [payload] control thread has finished
[2026-01-10 20:09:08] 2026-01-11 01:08:22,969 | INFO     | [payload] validate_post thread has finished
[2026-01-10 20:09:08] 2026-01-11 01:08:23,019 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 20:09:08] 2026-01-11 01:08:23,023 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 20:09:08] 2026-01-11 01:08:23,027 | INFO     | [job] control thread has finished
[2026-01-10 20:09:08] 2026-01-11 01:08:24,643 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 20:09:08] 2026-01-11 01:08:50,972 | INFO     | PID=600010 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 20:09:08] 2026-01-11 01:08:50,972 | INFO     | .. there are 9 such processes running
[2026-01-10 20:09:08] 2026-01-11 01:08:50,997 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 20:09:08] 2026-01-11 01:08:50,997 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 20:09:08] 2026-01-11 01:08:50,997 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 20:09:08] 2026-01-11 01:09:00,995 | INFO     | [monitor] cgroup control has ended
[2026-01-10 20:09:08] 2026-01-11 01:09:02,129 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140557820188480)>', '<ExcThread(monitor, started 140557477201664)>']
[2026-01-10 20:09:08] 2026-01-11 01:09:03,068 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 20:09:08] 2026-01-11 01:09:03,068 | INFO     | [monitor] control thread has ended
[2026-01-10 20:09:08] 2026-01-11 01:09:07,155 | INFO     | all workflow threads have been joined
[2026-01-10 20:09:08] 2026-01-11 01:09:07,155 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 20:09:08] 2026-01-11 01:09:07,155 | INFO     | traces error code: 0
[2026-01-10 20:09:08] 2026-01-11 01:09:07,156 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 20:09:08] 2026-01-11 01:09:07,785 [wrapper] ==== pilot stdout END ====
[2026-01-10 20:09:08] 2026-01-11 01:09:07,854 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 20:09:08] 2026-01-11 01:09:07,866 [wrapper] pilotpid: 600010
[2026-01-10 20:09:08] 2026-01-11 01:09:07,900 [wrapper] Pilot exit status: 0
[2026-01-10 20:09:08] 2026-01-11 01:09:08,055 [wrapper] pandaids: 6965803451
[2026-01-10 20:09:08] 2026-01-11 01:09:08,503 [wrapper] cleanup supervisor_pilot  723973 600011
[2026-01-10 20:09:08] 2026-01-11 01:09:08,507 [wrapper] Test setup, not cleaning
[2026-01-10 20:09:08] 2026-01-11 01:09:08,509 [wrapper] apfmon messages muted
[2026-01-10 20:09:08] 2026-01-11 01:09:08,511 [wrapper] ==== wrapper stdout END ====
[2026-01-10 20:09:08] 2026-01-11 01:09:08,513 [wrapper] ==== wrapper stderr END ====
[2026-01-10 20:09:08]  *** Error codes and diagnostics ***
[2026-01-10 20:09:08]     "exeErrorCode": 0,
[2026-01-10 20:09:08]     "exeErrorDiag": "",
[2026-01-10 20:09:08]     "pilotErrorCode": 0,
[2026-01-10 20:09:08]     "pilotErrorDiag": "",
[2026-01-10 20:09:08]  *** Listing of results directory ***
[2026-01-10 20:09:08] total 435580
[2026-01-10 20:09:08] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 18:00 pilot3.tar.gz
[2026-01-10 20:09:08] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 18:05 queuedata.json
[2026-01-10 20:09:08] -rwx------. 1 boincer umatlas     36322 Jan 10 18:05 runpilot2-wrapper.sh
[2026-01-10 20:09:08] -rw-r--r--. 1 boincer umatlas       100 Jan 10 18:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 20:09:08] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 18:31 run_atlas
[2026-01-10 20:09:08] -rw-r--r--. 1 boincer umatlas       105 Jan 10 18:31 job.xml
[2026-01-10 20:09:08] -rw-r--r--. 2 boincer umatlas 393319043 Jan 10 18:31 EVNT.47962006._000127.pool.root.1
[2026-01-10 20:09:08] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 18:31 start_atlas.sh
[2026-01-10 20:09:08] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 18:31 shared
[2026-01-10 20:09:08] -rw-r--r--. 2 boincer umatlas    592614 Jan 10 18:31 input.tar.gz
[2026-01-10 20:09:08] -rw-r--r--. 1 boincer umatlas         0 Jan 10 18:31 boinc_lockfile
[2026-01-10 20:09:08] -rw-r--r--. 1 boincer umatlas      2891 Jan 10 18:31 pandaJob.out
[2026-01-10 20:09:08] -rw-------. 1 boincer umatlas        57 Jan 10 18:31 setup.sh.local
[2026-01-10 20:09:08] -rw-------. 1 boincer umatlas    989548 Jan 10 18:31 agis_schedconf.cvmfs.json
[2026-01-10 20:09:08] -rw-------. 1 boincer umatlas   1516240 Jan 10 18:31 agis_ddmendpoints.agis.ALL.json
[2026-01-10 20:09:08] drwx------. 5 boincer umatlas      4096 Jan 10 18:31 pilot3
[2026-01-10 20:09:08] -rw-r--r--. 1 boincer umatlas       529 Jan 10 19:55 boinc_task_state.xml
[2026-01-10 20:09:08] -rw-r--r--. 1 boincer umatlas      6841 Jan 10 20:02 init_data.xml
[2026-01-10 20:09:08] -rw-------. 1 boincer umatlas  44763970 Jan 10 20:07 HITS.47962010._002903.pool.root.1
[2026-01-10 20:09:08] -rw-------. 1 boincer umatlas      1033 Jan 10 20:07 memory_monitor_summary.json
[2026-01-10 20:09:08] -rw-------. 1 boincer umatlas   1216336 Jan 10 20:07 log.47962010._002903.job.log.tgz.1
[2026-01-10 20:09:08] -rw-------. 1 boincer umatlas      8577 Jan 10 20:08 heartbeat.json
[2026-01-10 20:09:08] -rw-------. 1 boincer umatlas        95 Jan 10 20:08 pilot_heartbeat.json
[2026-01-10 20:09:08] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 20:08 boinc_mmap_file
[2026-01-10 20:09:08] -rw-r--r--. 1 boincer umatlas        27 Jan 10 20:08 wrapper_checkpoint.txt
[2026-01-10 20:09:08] -rw-------. 1 boincer umatlas      5008 Jan 10 20:09 pilotlog.txt
[2026-01-10 20:09:08] -rw-------. 1 boincer umatlas    800081 Jan 10 20:09 log.47962010._002903.job.log.1
[2026-01-10 20:09:08] -rw-------. 1 boincer umatlas       353 Jan 10 20:09 output.list
[2026-01-10 20:09:08] -rw-r--r--. 1 boincer umatlas       620 Jan 10 20:09 runtime_log
[2026-01-10 20:09:08] -rw-------. 1 boincer umatlas   2037760 Jan 10 20:09 result.tar.gz
[2026-01-10 20:09:08] -rw-r--r--. 1 boincer umatlas      9352 Jan 10 20:09 runtime_log.err
[2026-01-10 20:09:08] -rw-------. 1 boincer umatlas       654 Jan 10 20:09 maRLDmKCxy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmxmKDmC1GdRo.diag
[2026-01-10 20:09:08] -rw-r--r--. 1 boincer umatlas     22413 Jan 10 20:09 stderr.txt
[2026-01-10 20:09:08] HITS file was successfully produced:
[2026-01-10 20:09:08] -rw-------. 1 boincer umatlas 44763970 Jan 10 20:07 shared/HITS.pool.root.1
[2026-01-10 20:09:08]  *** Contents of shared directory: ***
[2026-01-10 20:09:08] total 430408
[2026-01-10 20:09:08] -rw-r--r--. 2 boincer umatlas 393319043 Jan 10 18:31 ATLAS.root_0
[2026-01-10 20:09:08] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 18:31 start_atlas.sh
[2026-01-10 20:09:08] -rw-r--r--. 2 boincer umatlas    592614 Jan 10 18:31 input.tar.gz
[2026-01-10 20:09:08] -rw-------. 1 boincer umatlas  44763970 Jan 10 20:07 HITS.pool.root.1
[2026-01-10 20:09:08] -rw-------. 1 boincer umatlas   2037760 Jan 10 20:09 result.tar.gz
20:09:09 (595995): run_atlas exited; CPU time 13802.132782
20:09:09 (595995): called boinc_finish(0)

</stderr_txt>
]]>

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