Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:09:45 (3809025): wrapper (7.7.26015): starting
18:09:45 (3809025): wrapper: running run_atlas (--nthreads 11)
[2026-01-10 18:09:45] Arguments: --nthreads 11
[2026-01-10 18:09:45] Threads: 11
[2026-01-10 18:09:45] Checking for CVMFS
[2026-01-10 18:09:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 18:09:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 18:09:45] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 18:09:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 18:09:46] 2.13.3.0 10954 95489 401000 154994 1 139 28796948 32935936 11647 16776704 26 363188229 99.474 529780197 38292 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 18:09:46] CVMFS is ok
[2026-01-10 18:09:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 18:09:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 18:09:46] Further information can be found at the LHC@home message board.
[2026-01-10 18:09:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 18:09:46] Checking for apptainer binary...
[2026-01-10 18:09:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 18:09:46] Running /usr/bin/apptainer --version
[2026-01-10 18:09:46] apptainer version 1.4.5-2.el9
[2026-01-10 18:09:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 18:09:46] c7-11-13.aglt2.org
[2026-01-10 18:09:46] apptainer works
[2026-01-10 18:09:46] Set ATHENA_PROC_NUMBER=11
[2026-01-10 18:09:46] Set ATHENA_CORE_NUMBER=11
[2026-01-10 18:09:46] Starting ATLAS job with PandaID=6965803445
[2026-01-10 18:09:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 19:48:41]  *** The last 200 lines of the pilot log: ***
[2026-01-10 19:48:41]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6965803445/log.47962010._002897.job.log.tgz.1
[2026-01-10 19:48:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/65/09/log.47962010._002897.job.log.tgz.1
[2026-01-10 19:48:41]  workdir=None
[2026-01-10 19:48:41] ]
[2026-01-10 19:48:41] 2026-01-11 00:47:54,155 | INFO     | transferring file log.47962010._002897.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6965803445/log.47962010._002897.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-10 19:48:41] 2026-01-11 00:47:54,156 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6965803445/log.47962010._002897.job.log.tgz.1 /tmp/boinchome/slots/0/log.47962010._002897.job
[2026-01-10 19:48:41] 2026-01-11 00:47:54,191 | INFO     | adding to output.list: log.47962010._002897.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/65/09/log.47962010._002897.job.log.tgz.
[2026-01-10 19:48:41] 2026-01-11 00:47:54,192 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 19:48:41] 2026-01-11 00:47:54,192 | INFO     | summary of transferred files:
[2026-01-10 19:48:41] 2026-01-11 00:47:54,192 | INFO     |  -- lfn=log.47962010._002897.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 19:48:41] 2026-01-11 00:47:54,192 | INFO     | stage-out finished correctly
[2026-01-10 19:48:41] 2026-01-11 00:47:56,003 | INFO     | time since job start (5866s) is within the limit (349056.0s)
[2026-01-10 19:48:41] 2026-01-11 00:47:56,549 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 19:48:41] 2026-01-11 00:47:57,821 | WARNING  | process 3823833 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 19:48:41] 2026-01-11 00:47:57,821 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6965803445/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 19:48:41] 2026-01-11 00:47:58,019 | INFO     | time since job start (5868s) is within the limit (349056.0s)
[2026-01-10 19:48:41] 2026-01-11 00:47:58,110 | INFO     | number of running child processes to parent process 3823833: 1
[2026-01-10 19:48:41] 2026-01-11 00:47:58,110 | INFO     | maximum number of monitored processes: 19
[2026-01-10 19:48:41] 2026-01-11 00:47:58,408 | INFO     | job 6965803445 has state=finished
[2026-01-10 19:48:41] 2026-01-11 00:47:58,408 | INFO     | preparing for final server update for job 6965803445 in state='finished'
[2026-01-10 19:48:41] 2026-01-11 00:47:58,409 | INFO     | this job has now completed (state=finished)
[2026-01-10 19:48:41] 2026-01-11 00:47:58,409 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 19:48:41] 2026-01-11 00:47:58,409 | INFO     | log transfer has been attempted: DONE
[2026-01-10 19:48:41] 2026-01-11 00:47:58,409 | INFO     | job 6965803445 has finished - writing final server update
[2026-01-10 19:48:41] 2026-01-11 00:47:58,409 | INFO     | total number of processed events: 50 (read)
[2026-01-10 19:48:41] 2026-01-11 00:47:58,412 | INFO     | executing command: lscpu
[2026-01-10 19:48:41] 2026-01-11 00:47:58,457 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 19:48:41] 2026-01-11 00:48:00,040 | INFO     | time since job start (5870s) is within the limit (349056.0s)
[2026-01-10 19:48:41] 2026-01-11 00:48:00,616 | INFO     | monitor loop #410: job 0:6965803445 is in state 'finished'
[2026-01-10 19:48:41] 2026-01-11 00:48:00,616 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 19:48:41] 2026-01-11 00:48:02,047 | INFO     | time since job start (5872s) is within the limit (349056.0s)
[2026-01-10 19:48:41] 2026-01-11 00:48:03,120 | INFO     | monitor loop #411: job 0:6965803445 is in state 'finished'
[2026-01-10 19:48:41] 2026-01-11 00:48:03,120 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 19:48:41] 2026-01-11 00:48:04,054 | INFO     | time since job start (5874s) is within the limit (349056.0s)
[2026-01-10 19:48:41] 2026-01-11 00:48:05,626 | INFO     | monitor loop #412: job 0:6965803445 is in state 'finished'
[2026-01-10 19:48:41] 2026-01-11 00:48:05,626 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 19:48:41] 2026-01-11 00:48:06,060 | INFO     | time since job start (5876s) is within the limit (349056.0s)
[2026-01-10 19:48:41] 2026-01-11 00:48:07,077 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 19:48:41] 2026-01-11 00:48:07,080 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3290.1904375000013
[2026-01-10 19:48:41] 2026-01-11 00:48:07,089 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6965803445/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 19:48:41] 2026-01-11 00:48:07,090 | INFO     | extracted standard info from prmon json
[2026-01-10 19:48:41] 2026-01-11 00:48:07,090 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 19:48:41] 2026-01-11 00:48:07,090 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 19:48:41] 2026-01-11 00:48:07,092 | INFO     | fitting pss+swap vs Time
[2026-01-10 19:48:41] 2026-01-11 00:48:07,092 | INFO     | sum of square deviations: 218420077.05618024
[2026-01-10 19:48:41] 2026-01-11 00:48:07,092 | INFO     | sum of deviations: 9291264885.32584
[2026-01-10 19:48:41] 2026-01-11 00:48:07,092 | INFO     | mean x: 1768089641.741573
[2026-01-10 19:48:41] 2026-01-11 00:48:07,092 | INFO     | mean y: 2794474.1011235956
[2026-01-10 19:48:41] 2026-01-11 00:48:07,092 | INFO     | intersect: -75209106482.22168
[2026-01-10 19:48:41] 2026-01-11 00:48:07,093 | INFO     | chi2: 0.5050276030326308
[2026-01-10 19:48:41] 2026-01-11 00:48:07,093 | INFO     | current memory leak: 42.54 B/s (using 89 data points, chi2=0.51)
[2026-01-10 19:48:41] 2026-01-11 00:48:07,093 | INFO     | could have reported an average CPU frequency of 3291 MHz (7 samples)
[2026-01-10 19:48:41] 2026-01-11 00:48:07,093 | INFO     | ..............................
[2026-01-10 19:48:41] 2026-01-11 00:48:07,093 | INFO     | . Timing measurements:
[2026-01-10 19:48:41] 2026-01-11 00:48:07,093 | INFO     | . get job = 0 s
[2026-01-10 19:48:41] 2026-01-11 00:48:07,093 | INFO     | . initial setup = 3 s
[2026-01-10 19:48:41] 2026-01-11 00:48:07,093 | INFO     | . payload setup = 10 s
[2026-01-10 19:48:41] 2026-01-11 00:48:07,093 | INFO     | . stage-in = 0 s
[2026-01-10 19:48:41] 2026-01-11 00:48:07,093 | INFO     | . payload execution = 5828 s
[2026-01-10 19:48:41] 2026-01-11 00:48:07,093 | INFO     | . stage-out = 1 s
[2026-01-10 19:48:41] 2026-01-11 00:48:07,100 | INFO     | . log creation = 0 s
[2026-01-10 19:48:41] 2026-01-11 00:48:07,100 | INFO     | ..............................
[2026-01-10 19:48:41] 2026-01-11 00:48:07,200 | INFO     | 
[2026-01-10 19:48:41] 2026-01-11 00:48:07,200 | INFO     | job summary report
[2026-01-10 19:48:41] 2026-01-11 00:48:07,200 | INFO     | --------------------------------------------------
[2026-01-10 19:48:41] 2026-01-11 00:48:07,200 | INFO     | PanDA job id: 6965803445
[2026-01-10 19:48:41] 2026-01-11 00:48:07,200 | INFO     | task id: 47962010
[2026-01-10 19:48:41] 2026-01-11 00:48:07,201 | INFO     | errors: (none)
[2026-01-10 19:48:41] 2026-01-11 00:48:07,201 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 19:48:41] 2026-01-11 00:48:07,201 | INFO     | pilot state: finished 
[2026-01-10 19:48:41] 2026-01-11 00:48:07,201 | INFO     | transexitcode: 0
[2026-01-10 19:48:41] 2026-01-11 00:48:07,201 | INFO     | exeerrorcode: 0
[2026-01-10 19:48:41] 2026-01-11 00:48:07,201 | INFO     | exeerrordiag: 
[2026-01-10 19:48:41] 2026-01-11 00:48:07,201 | INFO     | exitcode: 0
[2026-01-10 19:48:41] 2026-01-11 00:48:07,201 | INFO     | exitmsg: OK
[2026-01-10 19:48:41] 2026-01-11 00:48:07,201 | INFO     | cpuconsumptiontime: 11118 s
[2026-01-10 19:48:41] 2026-01-11 00:48:07,201 | INFO     | nevents: 50
[2026-01-10 19:48:41] 2026-01-11 00:48:07,201 | INFO     | neventsw: 0
[2026-01-10 19:48:41] 2026-01-11 00:48:07,207 | INFO     | pid: 3823833
[2026-01-10 19:48:41] 2026-01-11 00:48:07,207 | INFO     | pgrp: 3823833
[2026-01-10 19:48:41] 2026-01-11 00:48:07,207 | INFO     | corecount: 11
[2026-01-10 19:48:41] 2026-01-11 00:48:07,207 | INFO     | event service: False
[2026-01-10 19:48:41] 2026-01-11 00:48:07,207 | INFO     | sizes: {0: 2284400, 1: 2284599, 8: 2284861, 11: 2284889, 5843: 2312537, 5844: 2321531, 5847: 2321715, 5857: 2321961}
[2026-01-10 19:48:41] 2026-01-11 00:48:07,207 | INFO     | --------------------------------------------------
[2026-01-10 19:48:41] 2026-01-11 00:48:07,207 | INFO     | 
[2026-01-10 19:48:41] 2026-01-11 00:48:07,207 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-10 19:48:41] 2026-01-11 00:48:07,408 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 19:48:41] 2026-01-11 00:48:07,424 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 19:48:41] 2026-01-11 00:48:07,428 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 19:48:41] 2026-01-11 00:48:07,428 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 19:48:41] 2026-01-11 00:48:07,428 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 19:48:41] 2026-01-11 00:48:07,440 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 19:48:41] 2026-01-11 00:48:07,460 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 19:48:41] 2026-01-11 00:48:07,472 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 19:48:41] 2026-01-11 00:48:07,472 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 19:48:41] 2026-01-11 00:48:07,487 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 19:48:41] 2026-01-11 00:48:07,495 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 19:48:41] 2026-01-11 00:48:07,495 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 19:48:41] 2026-01-11 00:48:07,495 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 19:48:41] 2026-01-11 00:48:07,495 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 19:48:41] 2026-01-11 00:48:07,495 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 19:48:41] 2026-01-11 00:48:07,495 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 19:48:41] 2026-01-11 00:48:07,495 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 19:48:41] 2026-01-11 00:48:07,495 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 19:48:41] 2026-01-11 00:48:07,495 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 19:48:41] 2026-01-11 00:48:07,495 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 19:48:41] 2026-01-11 00:48:07,495 | INFO     | job 6965803445 has completed (purged errors)
[2026-01-10 19:48:41] 2026-01-11 00:48:07,495 | INFO     | overall cleanup function is called
[2026-01-10 19:48:41] 2026-01-11 00:48:07,494 | INFO     | PID=3814562 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 19:48:41] 2026-01-11 00:48:07,499 | INFO     | .. there are 10 such processes running
[2026-01-10 19:48:41] 2026-01-11 00:48:08,514 | INFO     | --- collectZombieJob: --- 10, [3823833]
[2026-01-10 19:48:41] 2026-01-11 00:48:08,514 | INFO     | zombie collector waiting for pid 3823833
[2026-01-10 19:48:41] 2026-01-11 00:48:08,514 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 19:48:41] 2026-01-11 00:48:08,514 | INFO     | collected zombie processes
[2026-01-10 19:48:41] 2026-01-11 00:48:08,514 | INFO     | will attempt to kill all subprocesses of pid=3823833
[2026-01-10 19:48:41] 2026-01-11 00:48:09,018 | INFO     | process IDs to be killed: [3823833] (in reverse order)
[2026-01-10 19:48:41] 2026-01-11 00:48:09,164 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 19:48:41] 2026-01-11 00:48:09,165 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 19:48:41] 2026-01-11 00:48:09,248 | INFO     | did not find any defunct processes belonging to 3823833
[2026-01-10 19:48:41] 2026-01-11 00:48:09,329 | INFO     | did not find any defunct processes belonging to 3823833
[2026-01-10 19:48:41] 2026-01-11 00:48:09,329 | INFO     | ready for new job
[2026-01-10 19:48:41] 2026-01-11 00:48:09,330 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 19:48:41] 2026-01-11 00:48:09,332 | INFO     | ***************************************
[2026-01-10 19:48:41] 2026-01-11 00:48:09,332 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 19:48:41] 2026-01-11 00:48:09,332 | INFO     | ***************************************
[2026-01-10 19:48:41] 2026-01-11 00:48:09,332 | INFO     | 
[2026-01-10 19:48:41] 2026-01-11 00:48:09,336 | INFO     | architecture information:
[2026-01-10 19:48:41] 2026-01-11 00:48:09,336 | INFO     | executing command: cat /etc/os-release
[2026-01-10 19:48:41] 2026-01-11 00:48:09,369 | INFO     | cat /etc/os-release:
[2026-01-10 19:48:41] NAME="CentOS Linux"
[2026-01-10 19:48:41] VERSION="7 (Core)"
[2026-01-10 19:48:41] ID="centos"
[2026-01-10 19:48:41] ID_LIKE="rhel fedora"
[2026-01-10 19:48:41] VERSION_ID="7"
[2026-01-10 19:48:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 19:48:41] ANSI_COLOR="0;31"
[2026-01-10 19:48:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 19:48:41] HOME_URL="https://www.centos.org/"
[2026-01-10 19:48:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 19:48:41] 
[2026-01-10 19:48:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 19:48:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 19:48:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 19:48:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 19:48:41] 
[2026-01-10 19:48:41] 2026-01-11 00:48:09,369 | INFO     | ***************************************
[2026-01-10 19:48:41] 2026-01-11 00:48:09,872 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-10 19:48:41] 2026-01-11 00:48:09,949 | INFO     | sufficient remaining disk space (94768201728 B)
[2026-01-10 19:48:41] 2026-01-11 00:48:09,949 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 19:48:41] 2026-01-11 00:48:09,949 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 19:48:41] 2026-01-11 00:48:09,949 | INFO     | update_server=False
[2026-01-10 19:48:41] 2026-01-11 00:48:09,950 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 19:48:41] 2026-01-11 00:48:09,950 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 19:48:41] 2026-01-11 00:48:09,950 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 19:48:41] 2026-01-11 00:48:09,950 | INFO     | aborting loop
[2026-01-10 19:48:41] 2026-01-11 00:48:10,513 | INFO     | all data control threads have been joined
[2026-01-10 19:48:41] 2026-01-11 00:48:10,963 | INFO     | [job] retrieve thread has finished
[2026-01-10 19:48:41] 2026-01-11 00:48:10,963 | INFO     | [job] job monitor thread has finished
[2026-01-10 19:48:41] 2026-01-11 00:48:11,228 | INFO     | all job control threads have been joined
[2026-01-10 19:48:41] 2026-01-11 00:48:11,422 | INFO     | [payload] validate_post thread has finished
[2026-01-10 19:48:41] 2026-01-11 00:48:11,444 | INFO     | all payload control threads have been joined
[2026-01-10 19:48:41] 2026-01-11 00:48:11,519 | INFO     | [data] control thread has finished
[2026-01-10 19:48:41] 2026-01-11 00:48:11,662 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 19:48:41] 2026-01-11 00:48:11,731 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 19:48:41] 2026-01-11 00:48:11,797 | INFO     | [job] validate thread has finished
[2026-01-10 19:48:41] 2026-01-11 00:48:11,806 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 19:48:41] 2026-01-11 00:48:11,814 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 19:48:41] 2026-01-11 00:48:11,959 | INFO     | [data] copytool_out thread has finished
[2026-01-10 19:48:41] 2026-01-11 00:48:12,227 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 19:48:41] 2026-01-11 00:48:12,235 | INFO     | [job] control thread has finished
[2026-01-10 19:48:41] 2026-01-11 00:48:12,299 | INFO     | [data] copytool_in thread has finished
[2026-01-10 19:48:41] 2026-01-11 00:48:12,331 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 19:48:41] 2026-01-11 00:48:12,442 | INFO     | [payload] failed_post thread has finished
[2026-01-10 19:48:41] 2026-01-11 00:48:12,450 | INFO     | [payload] control thread has finished
[2026-01-10 19:48:41] 2026-01-11 00:48:13,232 | INFO     | [job] queue monitor thread has finished
[2026-01-10 19:48:41] 2026-01-11 00:48:15,671 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 19:48:41] 2026-01-11 00:48:19,470 | INFO     | [monitor] cgroup control has ended
[2026-01-10 19:48:41] 2026-01-11 00:48:21,010 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140427369613120)>', '<ExcThread(monitor, started 140426866566912)>']
[2026-01-10 19:48:41] 2026-01-11 00:48:26,037 | INFO     | all workflow threads have been joined
[2026-01-10 19:48:41] 2026-01-11 00:48:26,037 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 19:48:41] 2026-01-11 00:48:26,037 | INFO     | traces error code: 0
[2026-01-10 19:48:41] 2026-01-11 00:48:26,037 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 19:48:41] 2026-01-11 00:48:40,293 | INFO     | PID=3814562 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 19:48:41] 2026-01-11 00:48:40,294 | INFO     | .. there are 10 such processes running
[2026-01-10 19:48:41] 2026-01-11 00:48:40,294 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 19:48:41] 2026-01-11 00:48:40,294 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 19:48:41] 2026-01-11 00:48:40,294 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 19:48:41] 2026-01-11 00:48:40,294 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 19:48:41] 2026-01-11 00:48:40,294 | CRITICAL | thread 'MainThread' is not alive
[2026-01-10 19:48:41] 2026-01-11 00:48:40,294 | INFO     | [monitor] control thread has ended
[2026-01-10 19:48:41] 2026-01-11 00:48:41,194 [wrapper] ==== pilot stdout END ====
[2026-01-10 19:48:41] 2026-01-11 00:48:41,201 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 19:48:41] 2026-01-11 00:48:41,208 [wrapper] pilotpid: 3814562
[2026-01-10 19:48:41] 2026-01-11 00:48:41,211 [wrapper] Pilot exit status: 0
[2026-01-10 19:48:41] 2026-01-11 00:48:41,277 [wrapper] pandaids: 6965803445
[2026-01-10 19:48:41] 2026-01-11 00:48:41,435 [wrapper] cleanup supervisor_pilot 3941188 3814563
[2026-01-10 19:48:41] 2026-01-11 00:48:41,470 [wrapper] Test setup, not cleaning
[2026-01-10 19:48:41] 2026-01-11 00:48:41,518 [wrapper] apfmon messages muted
[2026-01-10 19:48:41] 2026-01-11 00:48:41,556 [wrapper] ==== wrapper stdout END ====
[2026-01-10 19:48:41] 2026-01-11 00:48:41,594 [wrapper] ==== wrapper stderr END ====
[2026-01-10 19:48:41]  *** Error codes and diagnostics ***
[2026-01-10 19:48:41]     "exeErrorCode": 0,
[2026-01-10 19:48:41]     "exeErrorDiag": "",
[2026-01-10 19:48:41]     "pilotErrorCode": 0,
[2026-01-10 19:48:41]     "pilotErrorDiag": "",
[2026-01-10 19:48:41]  *** Listing of results directory ***
[2026-01-10 19:48:41] total 435036
[2026-01-10 19:48:41] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 18:00 pilot3.tar.gz
[2026-01-10 19:48:41] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 18:05 queuedata.json
[2026-01-10 19:48:41] -rwx------. 1 boincer umatlas     36322 Jan 10 18:05 runpilot2-wrapper.sh
[2026-01-10 19:48:41] -rw-r--r--. 1 boincer umatlas       100 Jan 10 18:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 19:48:41] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 18:09 run_atlas
[2026-01-10 19:48:41] -rw-r--r--. 1 boincer umatlas       105 Jan 10 18:09 job.xml
[2026-01-10 19:48:41] -rw-r--r--. 2 boincer umatlas 393319043 Jan 10 18:09 EVNT.47962006._000127.pool.root.1
[2026-01-10 19:48:41] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 18:09 start_atlas.sh
[2026-01-10 19:48:41] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 18:09 shared
[2026-01-10 19:48:41] -rw-r--r--. 2 boincer umatlas    592617 Jan 10 18:09 input.tar.gz
[2026-01-10 19:48:41] -rw-r--r--. 1 boincer umatlas         0 Jan 10 18:09 boinc_lockfile
[2026-01-10 19:48:41] -rw-r--r--. 1 boincer umatlas      2891 Jan 10 18:09 pandaJob.out
[2026-01-10 19:48:41] -rw-------. 1 boincer umatlas        57 Jan 10 18:09 setup.sh.local
[2026-01-10 19:48:41] -rw-------. 1 boincer umatlas    989548 Jan 10 18:10 agis_schedconf.cvmfs.json
[2026-01-10 19:48:41] -rw-------. 1 boincer umatlas   1516240 Jan 10 18:10 agis_ddmendpoints.agis.ALL.json
[2026-01-10 19:48:41] drwx------. 5 boincer umatlas      4096 Jan 10 18:10 pilot3
[2026-01-10 19:48:41] -rw-r--r--. 1 boincer umatlas       530 Jan 10 19:38 boinc_task_state.xml
[2026-01-10 19:48:41] -rw-r--r--. 1 boincer umatlas      6903 Jan 10 19:40 init_data.xml
[2026-01-10 19:48:41] -rw-------. 1 boincer umatlas  43506822 Jan 10 19:47 HITS.47962010._002897.pool.root.1
[2026-01-10 19:48:41] -rw-------. 1 boincer umatlas      1034 Jan 10 19:47 memory_monitor_summary.json
[2026-01-10 19:48:41] -rw-------. 1 boincer umatlas   1524608 Jan 10 19:47 log.47962010._002897.job.log.tgz.1
[2026-01-10 19:48:41] -rw-------. 1 boincer umatlas        95 Jan 10 19:47 pilot_heartbeat.json
[2026-01-10 19:48:41] -rw-------. 1 boincer umatlas      8539 Jan 10 19:48 heartbeat.json
[2026-01-10 19:48:41] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 19:48 boinc_mmap_file
[2026-01-10 19:48:41] -rw-r--r--. 1 boincer umatlas        27 Jan 10 19:48 wrapper_checkpoint.txt
[2026-01-10 19:48:41] -rw-------. 1 boincer umatlas       893 Jan 10 19:48 pilotlog.txt
[2026-01-10 19:48:41] -rw-------. 1 boincer umatlas    842120 Jan 10 19:48 log.47962010._002897.job.log.1
[2026-01-10 19:48:41] -rw-------. 1 boincer umatlas       353 Jan 10 19:48 output.list
[2026-01-10 19:48:41] -rw-r--r--. 1 boincer umatlas       620 Jan 10 19:48 runtime_log
[2026-01-10 19:48:41] -rw-------. 1 boincer umatlas   2385920 Jan 10 19:48 result.tar.gz
[2026-01-10 19:48:41] -rw-------. 1 boincer umatlas       655 Jan 10 19:48 zJOLDmKCxy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjxmKDmgSbpnn.diag
[2026-01-10 19:48:41] -rw-r--r--. 1 boincer umatlas      9344 Jan 10 19:48 runtime_log.err
[2026-01-10 19:48:41] -rw-r--r--. 1 boincer umatlas     22482 Jan 10 19:48 stderr.txt
[2026-01-10 19:48:41] HITS file was successfully produced:
[2026-01-10 19:48:41] -rw-------. 1 boincer umatlas 43506822 Jan 10 19:47 shared/HITS.pool.root.1
[2026-01-10 19:48:41]  *** Contents of shared directory: ***
[2026-01-10 19:48:41] total 429524
[2026-01-10 19:48:41] -rw-r--r--. 2 boincer umatlas 393319043 Jan 10 18:09 ATLAS.root_0
[2026-01-10 19:48:41] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 18:09 start_atlas.sh
[2026-01-10 19:48:41] -rw-r--r--. 2 boincer umatlas    592617 Jan 10 18:09 input.tar.gz
[2026-01-10 19:48:41] -rw-------. 1 boincer umatlas  43506822 Jan 10 19:47 HITS.pool.root.1
[2026-01-10 19:48:41] -rw-------. 1 boincer umatlas   2385920 Jan 10 19:48 result.tar.gz
19:48:43 (3809025): run_atlas exited; CPU time 11065.251622
19:48:43 (3809025): called boinc_finish(0)

</stderr_txt>
]]>

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