Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:10:42 (3929462): wrapper (7.7.26015): starting
18:10:42 (3929462): wrapper: running run_atlas (--nthreads 9)
[2026-01-10 18:10:42] Arguments: --nthreads 9
[2026-01-10 18:10:42] Threads: 9
[2026-01-10 18:10:42] Checking for CVMFS
[2026-01-10 18:10:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 18:10:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 18:10:43] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 18:10:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 18:10:43] 2.13.3.0 10276 23466 109052 154996 3 67 33558532 40960000 20487 16776704 0 71645888 99.832 28219070 48759 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 18:10:43] CVMFS is ok
[2026-01-10 18:10:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 18:10:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 18:10:43] Further information can be found at the LHC@home message board.
[2026-01-10 18:10:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 18:10:43] Checking for apptainer binary...
[2026-01-10 18:10:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 18:10:43] Running /usr/bin/apptainer --version
[2026-01-10 18:10:43] apptainer version 1.4.5-2.el9
[2026-01-10 18:10:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 18:10:43] c-208-36.aglt2.org
[2026-01-10 18:10:43] apptainer works
[2026-01-10 18:10:43] Set ATHENA_PROC_NUMBER=9
[2026-01-10 18:10:43] Set ATHENA_CORE_NUMBER=9
[2026-01-10 18:10:43] Starting ATLAS job with PandaID=6965803407
[2026-01-10 18:10:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 18:52:27]  *** The last 200 lines of the pilot log: ***
[2026-01-10 18:52:27] 2026-01-10 23:50:34,143 | INFO     | monitor loop #161: job 0:6965803407 is in state 'finished'
[2026-01-10 18:52:27] 2026-01-10 23:50:34,143 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 18:52:27] 2026-01-10 23:50:34,219 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 18:52:27] 2026-01-10 23:50:35,651 | INFO     | time since job start (2382s) is within the limit (349056.0s)
[2026-01-10 18:52:27] 2026-01-10 23:50:36,648 | INFO     | monitor loop #162: job 0:6965803407 is in state 'finished'
[2026-01-10 18:52:27] 2026-01-10 23:50:36,648 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 18:52:27] 2026-01-10 23:50:37,659 | INFO     | time since job start (2384s) is within the limit (349056.0s)
[2026-01-10 18:52:27] 2026-01-10 23:50:39,152 | INFO     | monitor loop #163: job 0:6965803407 is in state 'finished'
[2026-01-10 18:52:27] 2026-01-10 23:50:39,153 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 18:52:27] 2026-01-10 23:50:39,679 | INFO     | time since job start (2386s) is within the limit (349056.0s)
[2026-01-10 18:52:27] 2026-01-10 23:50:41,661 | INFO     | monitor loop #164: job 0:6965803407 is in state 'finished'
[2026-01-10 18:52:27] 2026-01-10 23:50:41,671 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 18:52:27] 2026-01-10 23:50:41,905 | INFO     | PID=3940060 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 18:52:27] 2026-01-10 23:50:41,905 | INFO     | .. there are 21 such processes running
[2026-01-10 18:52:27] 2026-01-10 23:50:42,906 | INFO     | time since job start (2389s) is within the limit (349056.0s)
[2026-01-10 18:52:27] 2026-01-10 23:50:44,193 | INFO     | monitor loop #165: job 0:6965803407 is in state 'finished'
[2026-01-10 18:52:27] 2026-01-10 23:50:44,194 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 18:52:27] 2026-01-10 23:50:44,913 | INFO     | time since job start (2391s) is within the limit (349056.0s)
[2026-01-10 18:52:27] 2026-01-10 23:50:46,702 | INFO     | monitor loop #166: job 0:6965803407 is in state 'finished'
[2026-01-10 18:52:27] 2026-01-10 23:50:46,703 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 18:52:27] 2026-01-10 23:50:46,920 | INFO     | time since job start (2393s) is within the limit (349056.0s)
[2026-01-10 18:52:27] 2026-01-10 23:50:48,927 | INFO     | time since job start (2395s) is within the limit (349056.0s)
[2026-01-10 18:52:27] 2026-01-10 23:50:49,207 | INFO     | monitor loop #167: job 0:6965803407 is in state 'finished'
[2026-01-10 18:52:27] 2026-01-10 23:50:49,208 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 18:52:27] 2026-01-10 23:50:50,934 | INFO     | time since job start (2397s) is within the limit (349056.0s)
[2026-01-10 18:52:27] 2026-01-10 23:50:51,712 | INFO     | monitor loop #168: job 0:6965803407 is in state 'finished'
[2026-01-10 18:52:27] 2026-01-10 23:50:51,713 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 18:52:27] 2026-01-10 23:50:52,948 | INFO     | time since job start (2399s) is within the limit (349056.0s)
[2026-01-10 18:52:27] 2026-01-10 23:50:54,218 | INFO     | monitor loop #169: job 0:6965803407 is in state 'finished'
[2026-01-10 18:52:27] 2026-01-10 23:50:54,219 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 18:52:27] 2026-01-10 23:50:54,962 | INFO     | time since job start (2401s) is within the limit (349056.0s)
[2026-01-10 18:52:27] 2026-01-10 23:50:56,723 | INFO     | monitor loop #170: job 0:6965803407 is in state 'finished'
[2026-01-10 18:52:27] 2026-01-10 23:50:56,725 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 18:52:27] 2026-01-10 23:50:56,969 | INFO     | time since job start (2403s) is within the limit (349056.0s)
[2026-01-10 18:52:27] 2026-01-10 23:50:58,975 | INFO     | time since job start (2405s) is within the limit (349056.0s)
[2026-01-10 18:52:27] 2026-01-10 23:50:59,229 | INFO     | monitor loop #171: job 0:6965803407 is in state 'finished'
[2026-01-10 18:52:27] 2026-01-10 23:50:59,231 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 18:52:27] 2026-01-10 23:51:00,983 | INFO     | time since job start (2407s) is within the limit (349056.0s)
[2026-01-10 18:52:27] 2026-01-10 23:51:01,735 | INFO     | monitor loop #172: job 0:6965803407 is in state 'finished'
[2026-01-10 18:52:27] 2026-01-10 23:51:01,736 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 18:52:27] 2026-01-10 23:51:02,019 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-10 18:52:27] 2026-01-10 23:51:02,024 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.2041562500003
[2026-01-10 18:52:27] 2026-01-10 23:51:02,037 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6965803407/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 18:52:27] 2026-01-10 23:51:02,038 | INFO     | extracted standard info from prmon json
[2026-01-10 18:52:27] 2026-01-10 23:51:02,038 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 18:52:27] 2026-01-10 23:51:02,038 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 18:52:27] 2026-01-10 23:51:02,039 | INFO     | fitting pss+swap vs Time
[2026-01-10 18:52:27] 2026-01-10 23:51:02,039 | INFO     | sum of square deviations: 10139318.71875
[2026-01-10 18:52:27] 2026-01-10 23:51:02,039 | INFO     | sum of deviations: -11559830081.4375
[2026-01-10 18:52:27] 2026-01-10 23:51:02,039 | INFO     | mean x: 1768087931.09375
[2026-01-10 18:52:27] 2026-01-10 23:51:02,039 | INFO     | mean y: 2233624.8125
[2026-01-10 18:52:27] 2026-01-10 23:51:02,039 | INFO     | intersect: 2015798030110.4238
[2026-01-10 18:52:27] 2026-01-10 23:51:02,039 | INFO     | chi2: 4.845665051951529
[2026-01-10 18:52:27] 2026-01-10 23:51:02,039 | INFO     | current memory leak: -1140.10 B/s (using 32 data points, chi2=4.85)
[2026-01-10 18:52:27] 2026-01-10 23:51:02,039 | INFO     | could have reported an average CPU frequency of 3782 MHz (5 samples)
[2026-01-10 18:52:27] 2026-01-10 23:51:02,040 | INFO     | ..............................
[2026-01-10 18:52:27] 2026-01-10 23:51:02,040 | INFO     | . Timing measurements:
[2026-01-10 18:52:27] 2026-01-10 23:51:02,040 | INFO     | . get job = 0 s
[2026-01-10 18:52:27] 2026-01-10 23:51:02,040 | INFO     | . initial setup = 2 s
[2026-01-10 18:52:27] 2026-01-10 23:51:02,040 | INFO     | . payload setup = 5 s
[2026-01-10 18:52:27] 2026-01-10 23:51:02,040 | INFO     | . stage-in = 0 s
[2026-01-10 18:52:27] 2026-01-10 23:51:02,040 | INFO     | . payload execution = 2350 s
[2026-01-10 18:52:27] 2026-01-10 23:51:02,040 | INFO     | . stage-out = 1 s
[2026-01-10 18:52:27] 2026-01-10 23:51:02,040 | INFO     | . log creation = 0 s
[2026-01-10 18:52:27] 2026-01-10 23:51:02,040 | INFO     | ..............................
[2026-01-10 18:52:27] 2026-01-10 23:51:02,135 | INFO     | 
[2026-01-10 18:52:27] 2026-01-10 23:51:02,136 | INFO     | job summary report
[2026-01-10 18:52:27] 2026-01-10 23:51:02,136 | INFO     | --------------------------------------------------
[2026-01-10 18:52:27] 2026-01-10 23:51:02,136 | INFO     | PanDA job id: 6965803407
[2026-01-10 18:52:27] 2026-01-10 23:51:02,136 | INFO     | task id: 47962010
[2026-01-10 18:52:27] 2026-01-10 23:51:02,136 | INFO     | errors: (none)
[2026-01-10 18:52:27] 2026-01-10 23:51:02,136 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 18:52:27] 2026-01-10 23:51:02,136 | INFO     | pilot state: finished 
[2026-01-10 18:52:27] 2026-01-10 23:51:02,136 | INFO     | transexitcode: 0
[2026-01-10 18:52:27] 2026-01-10 23:51:02,136 | INFO     | exeerrorcode: 0
[2026-01-10 18:52:27] 2026-01-10 23:51:02,136 | INFO     | exeerrordiag: 
[2026-01-10 18:52:27] 2026-01-10 23:51:02,136 | INFO     | exitcode: 0
[2026-01-10 18:52:27] 2026-01-10 23:51:02,136 | INFO     | exitmsg: OK
[2026-01-10 18:52:27] 2026-01-10 23:51:02,136 | INFO     | cpuconsumptiontime: 8209 s
[2026-01-10 18:52:27] 2026-01-10 23:51:02,136 | INFO     | nevents: 50
[2026-01-10 18:52:27] 2026-01-10 23:51:02,136 | INFO     | neventsw: 0
[2026-01-10 18:52:27] 2026-01-10 23:51:02,136 | INFO     | pid: 3965849
[2026-01-10 18:52:27] 2026-01-10 23:51:02,136 | INFO     | pgrp: 3965849
[2026-01-10 18:52:27] 2026-01-10 23:51:02,136 | INFO     | corecount: 9
[2026-01-10 18:52:27] 2026-01-10 23:51:02,137 | INFO     | event service: False
[2026-01-10 18:52:27] 2026-01-10 23:51:02,137 | INFO     | sizes: {0: 2284571, 4: 2284833, 11: 2284861, 2360: 2310915, 2363: 2319909, 2364: 2319965, 2393: 2320371}
[2026-01-10 18:52:27] 2026-01-10 23:51:02,137 | INFO     | --------------------------------------------------
[2026-01-10 18:52:27] 2026-01-10 23:51:02,137 | INFO     | 
[2026-01-10 18:52:27] 2026-01-10 23:51:02,137 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-10 18:52:27] 2026-01-10 23:51:02,299 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 18:52:27] 2026-01-10 23:51:02,300 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 18:52:27] 2026-01-10 23:51:02,300 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 18:52:27] 2026-01-10 23:51:02,300 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 18:52:27] 2026-01-10 23:51:02,300 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 18:52:27] 2026-01-10 23:51:02,300 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 18:52:27] 2026-01-10 23:51:02,300 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 18:52:27] 2026-01-10 23:51:02,300 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 18:52:27] 2026-01-10 23:51:02,300 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 18:52:27] 2026-01-10 23:51:02,300 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 18:52:27] 2026-01-10 23:51:02,300 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 18:52:27] 2026-01-10 23:51:02,300 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 18:52:27] 2026-01-10 23:51:02,300 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 18:52:27] 2026-01-10 23:51:02,300 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 18:52:27] 2026-01-10 23:51:02,300 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 18:52:27] 2026-01-10 23:51:02,300 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 18:52:27] 2026-01-10 23:51:02,300 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 18:52:27] 2026-01-10 23:51:02,301 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 18:52:27] 2026-01-10 23:51:02,301 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 18:52:27] 2026-01-10 23:51:02,301 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 18:52:27] 2026-01-10 23:51:02,301 | INFO     | job 6965803407 has completed (purged errors)
[2026-01-10 18:52:27] 2026-01-10 23:51:02,301 | INFO     | overall cleanup function is called
[2026-01-10 18:52:27] 2026-01-10 23:51:03,315 | INFO     | --- collectZombieJob: --- 10, [3965849]
[2026-01-10 18:52:27] 2026-01-10 23:51:03,316 | INFO     | zombie collector waiting for pid 3965849
[2026-01-10 18:52:27] 2026-01-10 23:51:03,316 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 18:52:27] 2026-01-10 23:51:03,316 | INFO     | collected zombie processes
[2026-01-10 18:52:27] 2026-01-10 23:51:03,316 | INFO     | will attempt to kill all subprocesses of pid=3965849
[2026-01-10 18:52:27] 2026-01-10 23:51:04,166 | INFO     | process IDs to be killed: [3965849] (in reverse order)
[2026-01-10 18:52:27] 2026-01-10 23:51:04,471 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 18:52:27] 2026-01-10 23:51:04,471 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 18:52:27] 2026-01-10 23:51:04,492 | INFO     | did not find any defunct processes belonging to 3965849
[2026-01-10 18:52:27] 2026-01-10 23:51:04,509 | INFO     | did not find any defunct processes belonging to 3965849
[2026-01-10 18:52:27] 2026-01-10 23:51:04,509 | INFO     | ready for new job
[2026-01-10 18:52:27] 2026-01-10 23:51:04,509 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 18:52:27] 2026-01-10 23:51:04,510 | INFO     | ***************************************
[2026-01-10 18:52:27] 2026-01-10 23:51:04,510 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 18:52:27] 2026-01-10 23:51:04,511 | INFO     | ***************************************
[2026-01-10 18:52:27] 2026-01-10 23:51:04,511 | INFO     | 
[2026-01-10 18:52:27] 2026-01-10 23:51:04,515 | INFO     | architecture information:
[2026-01-10 18:52:27] 2026-01-10 23:51:04,516 | INFO     | executing command: cat /etc/os-release
[2026-01-10 18:52:27] 2026-01-10 23:51:04,601 | INFO     | cat /etc/os-release:
[2026-01-10 18:52:27] NAME="CentOS Linux"
[2026-01-10 18:52:27] VERSION="7 (Core)"
[2026-01-10 18:52:27] ID="centos"
[2026-01-10 18:52:27] ID_LIKE="rhel fedora"
[2026-01-10 18:52:27] VERSION_ID="7"
[2026-01-10 18:52:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 18:52:27] ANSI_COLOR="0;31"
[2026-01-10 18:52:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 18:52:27] HOME_URL="https://www.centos.org/"
[2026-01-10 18:52:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 18:52:27] 
[2026-01-10 18:52:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 18:52:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 18:52:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 18:52:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 18:52:27] 
[2026-01-10 18:52:27] 2026-01-10 23:51:04,602 | INFO     | ***************************************
[2026-01-10 18:52:27] 2026-01-10 23:51:05,105 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-10 18:52:27] 2026-01-10 23:51:05,217 | INFO     | sufficient remaining disk space (170128310272 B)
[2026-01-10 18:52:27] 2026-01-10 23:51:05,217 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 18:52:27] 2026-01-10 23:51:05,217 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 18:52:27] 2026-01-10 23:51:05,217 | INFO     | update_server=False
[2026-01-10 18:52:27] 2026-01-10 23:51:05,217 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 18:52:27] 2026-01-10 23:51:05,218 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 18:52:27] 2026-01-10 23:51:05,246 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 18:52:27] 2026-01-10 23:51:05,247 | INFO     | aborting loop
[2026-01-10 18:52:27] 2026-01-10 23:51:05,257 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 18:52:27] 2026-01-10 23:51:05,529 | INFO     | all payload control threads have been joined
[2026-01-10 18:52:27] 2026-01-10 23:51:06,175 | INFO     | all data control threads have been joined
[2026-01-10 18:52:27] 2026-01-10 23:51:06,224 | INFO     | [job] retrieve thread has finished
[2026-01-10 18:52:27] 2026-01-10 23:51:06,253 | INFO     | [job] job monitor thread has finished
[2026-01-10 18:52:27] 2026-01-10 23:51:06,313 | INFO     | [data] copytool_in thread has finished
[2026-01-10 18:52:27] 2026-01-10 23:51:06,536 | INFO     | [payload] control thread has finished
[2026-01-10 18:52:27] 2026-01-10 23:51:06,554 | INFO     | all job control threads have been joined
[2026-01-10 18:52:27] 2026-01-10 23:51:06,935 | INFO     | [payload] failed_post thread has finished
[2026-01-10 18:52:27] 2026-01-10 23:51:06,979 | INFO     | [payload] validate_post thread has finished
[2026-01-10 18:52:27] 2026-01-10 23:51:07,107 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 18:52:27] 2026-01-10 23:51:07,130 | INFO     | [job] validate thread has finished
[2026-01-10 18:52:27] 2026-01-10 23:51:07,185 | INFO     | [data] control thread has finished
[2026-01-10 18:52:27] 2026-01-10 23:51:07,225 | INFO     | [data] copytool_out thread has finished
[2026-01-10 18:52:27] 2026-01-10 23:51:07,241 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 18:52:27] 2026-01-10 23:51:07,287 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 18:52:27] 2026-01-10 23:51:07,560 | INFO     | [job] control thread has finished
[2026-01-10 18:52:27] 2026-01-10 23:51:07,635 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 18:52:27] 2026-01-10 23:51:07,659 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 18:52:27] 2026-01-10 23:51:08,113 | INFO     | [job] queue monitor thread has finished
[2026-01-10 18:52:27] 2026-01-10 23:51:09,266 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 18:52:27] 2026-01-10 23:51:35,193 | INFO     | PID=3940060 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 18:52:27] 2026-01-10 23:51:35,194 | INFO     | .. there are 21 such processes running
[2026-01-10 18:52:27] 2026-01-10 23:51:35,194 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 18:52:27] 2026-01-10 23:51:35,194 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 18:52:27] 2026-01-10 23:51:35,194 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 18:52:27] 2026-01-10 23:51:56,849 | INFO     | [monitor] cgroup control has ended
[2026-01-10 18:52:27] 2026-01-10 23:51:57,849 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140008766539584)>', '<ExcThread(monitor, started 140008199542528)>']
[2026-01-10 18:52:27] 2026-01-10 23:51:58,340 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 18:52:27] 2026-01-10 23:51:58,340 | INFO     | [monitor] control thread has ended
[2026-01-10 18:52:27] 2026-01-10 23:52:02,875 | INFO     | all workflow threads have been joined
[2026-01-10 18:52:27] 2026-01-10 23:52:02,878 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 18:52:27] 2026-01-10 23:52:02,878 | INFO     | traces error code: 0
[2026-01-10 18:52:27] 2026-01-10 23:52:02,878 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 18:52:27] 2026-01-10 23:52:03,211 [wrapper] ==== pilot stdout END ====
[2026-01-10 18:52:27] 2026-01-10 23:52:03,240 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 18:52:27] 2026-01-10 23:52:03,275 [wrapper] pilotpid: 3940060
[2026-01-10 18:52:27] 2026-01-10 23:52:03,294 [wrapper] Pilot exit status: 0
[2026-01-10 18:52:27] 2026-01-10 23:52:03,415 [wrapper] pandaids: 6965803407
[2026-01-10 18:52:27] 2026-01-10 23:52:03,682 [wrapper] cleanup supervisor_pilot 4123083 3940061
[2026-01-10 18:52:27] 2026-01-10 23:52:03,715 [wrapper] Test setup, not cleaning
[2026-01-10 18:52:27] 2026-01-10 23:52:03,747 [wrapper] apfmon messages muted
[2026-01-10 18:52:27] 2026-01-10 23:52:03,775 [wrapper] ==== wrapper stdout END ====
[2026-01-10 18:52:27] 2026-01-10 23:52:03,818 [wrapper] ==== wrapper stderr END ====
[2026-01-10 18:52:27]  *** Error codes and diagnostics ***
[2026-01-10 18:52:27]     "exeErrorCode": 0,
[2026-01-10 18:52:27]     "exeErrorDiag": "",
[2026-01-10 18:52:27]     "pilotErrorCode": 0,
[2026-01-10 18:52:27]     "pilotErrorDiag": "",
[2026-01-10 18:52:27]  *** Listing of results directory ***
[2026-01-10 18:52:27] total 433996
[2026-01-10 18:52:27] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 18:00 pilot3.tar.gz
[2026-01-10 18:52:27] -rwx------. 1 boincer umatlas     36322 Jan 10 18:05 runpilot2-wrapper.sh
[2026-01-10 18:52:27] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 18:05 queuedata.json
[2026-01-10 18:52:27] -rw-r--r--. 1 boincer umatlas       100 Jan 10 18:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 18:52:27] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 18:10 run_atlas
[2026-01-10 18:52:27] -rw-r--r--. 1 boincer umatlas       105 Jan 10 18:10 job.xml
[2026-01-10 18:52:27] -rw-r--r--. 2 boincer umatlas 392167382 Jan 10 18:10 EVNT.47962006._000121.pool.root.1
[2026-01-10 18:52:27] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 18:10 start_atlas.sh
[2026-01-10 18:52:27] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 18:10 shared
[2026-01-10 18:52:27] -rw-r--r--. 2 boincer umatlas    592607 Jan 10 18:10 input.tar.gz
[2026-01-10 18:52:27] -rw-r--r--. 1 boincer umatlas         0 Jan 10 18:10 boinc_lockfile
[2026-01-10 18:52:27] -rw-r--r--. 1 boincer umatlas      2891 Jan 10 18:10 pandaJob.out
[2026-01-10 18:52:27] -rw-------. 1 boincer umatlas        57 Jan 10 18:10 setup.sh.local
[2026-01-10 18:52:27] -rw-------. 1 boincer umatlas    989548 Jan 10 18:10 agis_schedconf.cvmfs.json
[2026-01-10 18:52:27] -rw-------. 1 boincer umatlas   1516240 Jan 10 18:10 agis_ddmendpoints.agis.ALL.json
[2026-01-10 18:52:27] drwx------. 5 boincer umatlas      4096 Jan 10 18:10 pilot3
[2026-01-10 18:52:27] -rw-r--r--. 1 boincer umatlas       528 Jan 10 18:38 boinc_task_state.xml
[2026-01-10 18:52:27] -rw-r--r--. 1 boincer umatlas      7181 Jan 10 18:46 init_data.xml
[2026-01-10 18:52:27] -rw-------. 1 boincer umatlas  45066781 Jan 10 18:50 HITS.47962010._002859.pool.root.1
[2026-01-10 18:52:27] -rw-------. 1 boincer umatlas      1045 Jan 10 18:50 memory_monitor_summary.json
[2026-01-10 18:52:27] -rw-------. 1 boincer umatlas   1260769 Jan 10 18:50 log.47962010._002859.job.log.tgz.1
[2026-01-10 18:52:27] -rw-------. 1 boincer umatlas        95 Jan 10 18:50 pilot_heartbeat.json
[2026-01-10 18:52:27] -rw-------. 1 boincer umatlas      8540 Jan 10 18:51 heartbeat.json
[2026-01-10 18:52:27] -rw-------. 1 boincer umatlas      4825 Jan 10 18:52 pilotlog.txt
[2026-01-10 18:52:27] -rw-------. 1 boincer umatlas    370261 Jan 10 18:52 log.47962010._002859.job.log.1
[2026-01-10 18:52:27] -rw-------. 1 boincer umatlas       353 Jan 10 18:52 output.list
[2026-01-10 18:52:27] -rw-r--r--. 1 boincer umatlas       620 Jan 10 18:52 runtime_log
[2026-01-10 18:52:27] -rw-------. 1 boincer umatlas   1648640 Jan 10 18:52 result.tar.gz
[2026-01-10 18:52:27] -rw-r--r--. 1 boincer umatlas      9342 Jan 10 18:52 runtime_log.err
[2026-01-10 18:52:27] -rw-------. 1 boincer umatlas       651 Jan 10 18:52 PMcLDmJCxy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQfhKDmULEZvm.diag
[2026-01-10 18:52:27] -rw-r--r--. 1 boincer umatlas        26 Jan 10 18:52 wrapper_checkpoint.txt
[2026-01-10 18:52:27] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 18:52 boinc_mmap_file
[2026-01-10 18:52:27] -rw-r--r--. 1 boincer umatlas     22524 Jan 10 18:52 stderr.txt
[2026-01-10 18:52:27] HITS file was successfully produced:
[2026-01-10 18:52:27] -rw-------. 1 boincer umatlas 45066781 Jan 10 18:50 shared/HITS.pool.root.1
[2026-01-10 18:52:27]  *** Contents of shared directory: ***
[2026-01-10 18:52:27] total 429200
[2026-01-10 18:52:27] -rw-r--r--. 2 boincer umatlas 392167382 Jan 10 18:10 ATLAS.root_0
[2026-01-10 18:52:27] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 18:10 start_atlas.sh
[2026-01-10 18:52:27] -rw-r--r--. 2 boincer umatlas    592607 Jan 10 18:10 input.tar.gz
[2026-01-10 18:52:27] -rw-------. 1 boincer umatlas  45066781 Jan 10 18:50 HITS.pool.root.1
[2026-01-10 18:52:27] -rw-------. 1 boincer umatlas   1648640 Jan 10 18:52 result.tar.gz
18:52:29 (3929462): run_atlas exited; CPU time 8216.646922
18:52:29 (3929462): called boinc_finish(0)

</stderr_txt>
]]>

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