Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:22:46 (89379): wrapper (7.7.26015): starting
18:22:46 (89379): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 18:22:46] Arguments: --nthreads 8
[2026-01-10 18:22:46] Threads: 8
[2026-01-10 18:22:46] Checking for CVMFS
[2026-01-10 18:22:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 18:22:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 18:22:47] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 18:22:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 18:22:49] 2.13.3.0 5979 56163 251988 154997 2 83 32400690 32935937 12119 16776704 0 87261684 99.470 127008946 41853 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 18:22:49] CVMFS is ok
[2026-01-10 18:22:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 18:22:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 18:22:49] Further information can be found at the LHC@home message board.
[2026-01-10 18:22:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 18:22:49] Checking for apptainer binary...
[2026-01-10 18:22:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 18:22:49] Running /usr/bin/apptainer --version
[2026-01-10 18:22:49] apptainer version 1.4.5-2.el9
[2026-01-10 18:22:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 18:22:50] c6-1-26-4.aglt2.org
[2026-01-10 18:22:50] apptainer works
[2026-01-10 18:22:50] Set ATHENA_PROC_NUMBER=8
[2026-01-10 18:22:50] Set ATHENA_CORE_NUMBER=8
[2026-01-10 18:22:50] Starting ATLAS job with PandaID=6965803381
[2026-01-10 18:22:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 20:04:40]  *** The last 200 lines of the pilot log: ***
[2026-01-10 20:04:40] 2026-01-11 01:03:34,231 | INFO     | time since job start (5953s) is within the limit (349056.0s)
[2026-01-10 20:04:40] 2026-01-11 01:03:34,757 | INFO     | monitor loop #415: job 0:6965803381 is in state 'finished'
[2026-01-10 20:04:40] 2026-01-11 01:03:34,757 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:04:40] 2026-01-11 01:03:36,050 | INFO     | PID=95141 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 20:04:40] 2026-01-11 01:03:36,055 | INFO     | .. there are 9 such processes running
[2026-01-10 20:04:40] 2026-01-11 01:03:37,073 | INFO     | time since job start (5956s) is within the limit (349056.0s)
[2026-01-10 20:04:40] 2026-01-11 01:03:37,265 | INFO     | monitor loop #416: job 0:6965803381 is in state 'finished'
[2026-01-10 20:04:40] 2026-01-11 01:03:37,265 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:04:40] 2026-01-11 01:03:39,080 | INFO     | time since job start (5958s) is within the limit (349056.0s)
[2026-01-10 20:04:40] 2026-01-11 01:03:39,773 | INFO     | monitor loop #417: job 0:6965803381 is in state 'finished'
[2026-01-10 20:04:40] 2026-01-11 01:03:39,773 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:04:40] 2026-01-11 01:03:41,087 | INFO     | time since job start (5960s) is within the limit (349056.0s)
[2026-01-10 20:04:40] 2026-01-11 01:03:42,298 | INFO     | monitor loop #418: job 0:6965803381 is in state 'finished'
[2026-01-10 20:04:40] 2026-01-11 01:03:42,298 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:04:40] 2026-01-11 01:03:43,130 | INFO     | time since job start (5962s) is within the limit (349056.0s)
[2026-01-10 20:04:40] 2026-01-11 01:03:44,864 | INFO     | monitor loop #419: job 0:6965803381 is in state 'finished'
[2026-01-10 20:04:40] 2026-01-11 01:03:44,864 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:04:40] 2026-01-11 01:03:45,139 | INFO     | time since job start (5964s) is within the limit (349056.0s)
[2026-01-10 20:04:40] 2026-01-11 01:03:47,156 | INFO     | time since job start (5966s) is within the limit (349056.0s)
[2026-01-10 20:04:40] 2026-01-11 01:03:47,390 | INFO     | monitor loop #420: job 0:6965803381 is in state 'finished'
[2026-01-10 20:04:40] 2026-01-11 01:03:47,390 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:04:40] 2026-01-11 01:03:49,166 | INFO     | time since job start (5968s) is within the limit (349056.0s)
[2026-01-10 20:04:40] 2026-01-11 01:03:49,906 | INFO     | monitor loop #421: job 0:6965803381 is in state 'finished'
[2026-01-10 20:04:40] 2026-01-11 01:03:49,906 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:04:40] 2026-01-11 01:03:51,172 | INFO     | time since job start (5970s) is within the limit (349056.0s)
[2026-01-10 20:04:40] 2026-01-11 01:03:52,441 | INFO     | monitor loop #422: job 0:6965803381 is in state 'finished'
[2026-01-10 20:04:40] 2026-01-11 01:03:52,441 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:04:40] 2026-01-11 01:03:53,186 | INFO     | time since job start (5972s) is within the limit (349056.0s)
[2026-01-10 20:04:40] 2026-01-11 01:03:54,961 | INFO     | monitor loop #423: job 0:6965803381 is in state 'finished'
[2026-01-10 20:04:40] 2026-01-11 01:03:54,961 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:04:40] 2026-01-11 01:03:55,196 | INFO     | time since job start (5974s) is within the limit (349056.0s)
[2026-01-10 20:04:40] 2026-01-11 01:03:57,203 | INFO     | time since job start (5976s) is within the limit (349056.0s)
[2026-01-10 20:04:40] 2026-01-11 01:03:57,203 | INFO     | 5983s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-10 20:04:40] 2026-01-11 01:03:57,471 | INFO     | monitor loop #424: job 0:6965803381 is in state 'finished'
[2026-01-10 20:04:40] 2026-01-11 01:03:57,471 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:04:40] 2026-01-11 01:03:58,935 | INFO     | PID=95141 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 20:04:40] 2026-01-11 01:03:58,935 | INFO     | .. there are 9 such processes running
[2026-01-10 20:04:40] 2026-01-11 01:03:59,936 | INFO     | time since job start (5978s) is within the limit (349056.0s)
[2026-01-10 20:04:40] 2026-01-11 01:03:59,964 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-10 20:04:40] 2026-01-11 01:03:59,991 | INFO     | monitor loop #425: job 0:6965803381 is in state 'finished'
[2026-01-10 20:04:40] 2026-01-11 01:03:59,991 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:04:40] 2026-01-11 01:03:59,991 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3042.3783928571424
[2026-01-10 20:04:40] 2026-01-11 01:04:00,017 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6965803381/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 20:04:40] 2026-01-11 01:04:00,018 | INFO     | extracted standard info from prmon json
[2026-01-10 20:04:40] 2026-01-11 01:04:00,018 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 20:04:40] 2026-01-11 01:04:00,018 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 20:04:40] 2026-01-11 01:04:00,026 | INFO     | fitting pss+swap vs Time
[2026-01-10 20:04:40] 2026-01-11 01:04:00,027 | INFO     | sum of square deviations: 211134397.89772764
[2026-01-10 20:04:40] 2026-01-11 01:04:00,027 | INFO     | sum of deviations: 18870732687.068184
[2026-01-10 20:04:40] 2026-01-11 01:04:00,027 | INFO     | mean x: 1768090611.284091
[2026-01-10 20:04:40] 2026-01-11 01:04:00,027 | INFO     | mean y: 2104177.477272727
[2026-01-10 20:04:40] 2026-01-11 01:04:00,027 | INFO     | intersect: -158025984207.339
[2026-01-10 20:04:40] 2026-01-11 01:04:00,027 | INFO     | chi2: 10.977729891000685
[2026-01-10 20:04:40] 2026-01-11 01:04:00,027 | INFO     | current memory leak: 89.38 B/s (using 88 data points, chi2=10.98)
[2026-01-10 20:04:40] 2026-01-11 01:04:00,036 | INFO     | could have reported an average CPU frequency of 3023 MHz (7 samples)
[2026-01-10 20:04:40] 2026-01-11 01:04:00,036 | INFO     | ..............................
[2026-01-10 20:04:40] 2026-01-11 01:04:00,036 | INFO     | . Timing measurements:
[2026-01-10 20:04:40] 2026-01-11 01:04:00,036 | INFO     | . get job = 0 s
[2026-01-10 20:04:40] 2026-01-11 01:04:00,036 | INFO     | . initial setup = 7 s
[2026-01-10 20:04:40] 2026-01-11 01:04:00,036 | INFO     | . payload setup = 63 s
[2026-01-10 20:04:40] 2026-01-11 01:04:00,037 | INFO     | . stage-in = 0 s
[2026-01-10 20:04:40] 2026-01-11 01:04:00,037 | INFO     | . payload execution = 5771 s
[2026-01-10 20:04:40] 2026-01-11 01:04:00,037 | INFO     | . stage-out = 3 s
[2026-01-10 20:04:40] 2026-01-11 01:04:00,037 | INFO     | . log creation = 0 s
[2026-01-10 20:04:40] 2026-01-11 01:04:00,037 | INFO     | ..............................
[2026-01-10 20:04:40] 2026-01-11 01:04:00,301 | INFO     | 
[2026-01-10 20:04:40] 2026-01-11 01:04:00,301 | INFO     | job summary report
[2026-01-10 20:04:40] 2026-01-11 01:04:00,349 | INFO     | --------------------------------------------------
[2026-01-10 20:04:40] 2026-01-11 01:04:00,349 | INFO     | PanDA job id: 6965803381
[2026-01-10 20:04:40] 2026-01-11 01:04:00,349 | INFO     | task id: 47962010
[2026-01-10 20:04:40] 2026-01-11 01:04:00,349 | INFO     | errors: (none)
[2026-01-10 20:04:40] 2026-01-11 01:04:00,349 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 20:04:40] 2026-01-11 01:04:00,349 | INFO     | pilot state: finished 
[2026-01-10 20:04:40] 2026-01-11 01:04:00,349 | INFO     | transexitcode: 0
[2026-01-10 20:04:40] 2026-01-11 01:04:00,350 | INFO     | exeerrorcode: 0
[2026-01-10 20:04:40] 2026-01-11 01:04:00,350 | INFO     | exeerrordiag: 
[2026-01-10 20:04:40] 2026-01-11 01:04:00,350 | INFO     | exitcode: 0
[2026-01-10 20:04:40] 2026-01-11 01:04:00,350 | INFO     | exitmsg: OK
[2026-01-10 20:04:40] 2026-01-11 01:04:00,350 | INFO     | cpuconsumptiontime: 13674 s
[2026-01-10 20:04:40] 2026-01-11 01:04:00,350 | INFO     | nevents: 50
[2026-01-10 20:04:40] 2026-01-11 01:04:00,350 | INFO     | neventsw: 0
[2026-01-10 20:04:40] 2026-01-11 01:04:00,350 | INFO     | pid: 104089
[2026-01-10 20:04:40] 2026-01-11 01:04:00,350 | INFO     | pgrp: 104089
[2026-01-10 20:04:40] 2026-01-11 01:04:00,350 | INFO     | corecount: 8
[2026-01-10 20:04:40] 2026-01-11 01:04:00,350 | INFO     | event service: False
[2026-01-10 20:04:40] 2026-01-11 01:04:00,350 | INFO     | sizes: {0: 2283739, 1: 2284424, 2: 2284424, 3: 2284651, 15: 2284651, 26: 2284679, 37: 2284835, 44: 2285125, 49: 2285153, 5841: 2312536, 5842: 2312535, 5845: 232186
[2026-01-10 20:04:40] 2026-01-11 01:04:00,350 | INFO     | --------------------------------------------------
[2026-01-10 20:04:40] 2026-01-11 01:04:00,350 | INFO     | 
[2026-01-10 20:04:40] 2026-01-11 01:04:00,351 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-10 20:04:40] 2026-01-11 01:04:00,515 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 20:04:40] 2026-01-11 01:04:00,516 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 20:04:40] 2026-01-11 01:04:00,516 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 20:04:40] 2026-01-11 01:04:00,516 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 20:04:40] 2026-01-11 01:04:00,516 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 20:04:40] 2026-01-11 01:04:00,516 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 20:04:40] 2026-01-11 01:04:00,516 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 20:04:40] 2026-01-11 01:04:00,516 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 20:04:40] 2026-01-11 01:04:00,516 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 20:04:40] 2026-01-11 01:04:00,516 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 20:04:40] 2026-01-11 01:04:00,517 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 20:04:40] 2026-01-11 01:04:00,517 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 20:04:40] 2026-01-11 01:04:00,517 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 20:04:40] 2026-01-11 01:04:00,517 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 20:04:40] 2026-01-11 01:04:00,517 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 20:04:40] 2026-01-11 01:04:00,517 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 20:04:40] 2026-01-11 01:04:00,517 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 20:04:40] 2026-01-11 01:04:00,517 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 20:04:40] 2026-01-11 01:04:00,517 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 20:04:40] 2026-01-11 01:04:00,517 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 20:04:40] 2026-01-11 01:04:00,517 | INFO     | job 6965803381 has completed (purged errors)
[2026-01-10 20:04:40] 2026-01-11 01:04:00,518 | INFO     | overall cleanup function is called
[2026-01-10 20:04:40] 2026-01-11 01:04:01,620 | INFO     | --- collectZombieJob: --- 10, [104089]
[2026-01-10 20:04:40] 2026-01-11 01:04:01,621 | INFO     | zombie collector waiting for pid 104089
[2026-01-10 20:04:40] 2026-01-11 01:04:01,621 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 20:04:40] 2026-01-11 01:04:01,621 | INFO     | collected zombie processes
[2026-01-10 20:04:40] 2026-01-11 01:04:01,622 | INFO     | will attempt to kill all subprocesses of pid=104089
[2026-01-10 20:04:40] 2026-01-11 01:04:01,972 | INFO     | process IDs to be killed: [104089] (in reverse order)
[2026-01-10 20:04:40] 2026-01-11 01:04:02,250 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 20:04:40] 2026-01-11 01:04:02,251 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 20:04:40] 2026-01-11 01:04:02,268 | INFO     | did not find any defunct processes belonging to 104089
[2026-01-10 20:04:40] 2026-01-11 01:04:02,290 | INFO     | did not find any defunct processes belonging to 104089
[2026-01-10 20:04:40] 2026-01-11 01:04:02,291 | INFO     | ready for new job
[2026-01-10 20:04:40] 2026-01-11 01:04:02,291 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 20:04:40] 2026-01-11 01:04:02,293 | INFO     | ***************************************
[2026-01-10 20:04:40] 2026-01-11 01:04:02,293 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 20:04:40] 2026-01-11 01:04:02,293 | INFO     | ***************************************
[2026-01-10 20:04:40] 2026-01-11 01:04:02,293 | INFO     | 
[2026-01-10 20:04:40] 2026-01-11 01:04:02,300 | INFO     | architecture information:
[2026-01-10 20:04:40] 2026-01-11 01:04:02,304 | INFO     | executing command: cat /etc/os-release
[2026-01-10 20:04:40] 2026-01-11 01:04:02,397 | INFO     | cat /etc/os-release:
[2026-01-10 20:04:40] NAME="CentOS Linux"
[2026-01-10 20:04:40] VERSION="7 (Core)"
[2026-01-10 20:04:40] ID="centos"
[2026-01-10 20:04:40] ID_LIKE="rhel fedora"
[2026-01-10 20:04:40] VERSION_ID="7"
[2026-01-10 20:04:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 20:04:40] ANSI_COLOR="0;31"
[2026-01-10 20:04:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 20:04:40] HOME_URL="https://www.centos.org/"
[2026-01-10 20:04:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 20:04:40] 
[2026-01-10 20:04:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 20:04:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 20:04:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 20:04:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 20:04:40] 
[2026-01-10 20:04:40] 2026-01-11 01:04:02,397 | INFO     | ***************************************
[2026-01-10 20:04:40] 2026-01-11 01:04:02,901 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-10 20:04:40] 2026-01-11 01:04:02,972 | INFO     | sufficient remaining disk space (75821481984 B)
[2026-01-10 20:04:40] 2026-01-11 01:04:02,973 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 20:04:40] 2026-01-11 01:04:02,973 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 20:04:40] 2026-01-11 01:04:02,973 | INFO     | update_server=False
[2026-01-10 20:04:40] 2026-01-11 01:04:02,973 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 20:04:40] 2026-01-11 01:04:02,974 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 20:04:40] 2026-01-11 01:04:03,451 | INFO     | all data control threads have been joined
[2026-01-10 20:04:40] 2026-01-11 01:04:03,505 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 20:04:40] 2026-01-11 01:04:03,505 | INFO     | aborting loop
[2026-01-10 20:04:40] 2026-01-11 01:04:03,564 | INFO     | all job control threads have been joined
[2026-01-10 20:04:40] 2026-01-11 01:04:03,674 | INFO     | all payload control threads have been joined
[2026-01-10 20:04:40] 2026-01-11 01:04:03,979 | INFO     | [job] retrieve thread has finished
[2026-01-10 20:04:40] 2026-01-11 01:04:04,107 | INFO     | [payload] validate_post thread has finished
[2026-01-10 20:04:40] 2026-01-11 01:04:04,457 | INFO     | [data] control thread has finished
[2026-01-10 20:04:40] 2026-01-11 01:04:04,497 | INFO     | [job] validate thread has finished
[2026-01-10 20:04:40] 2026-01-11 01:04:04,511 | INFO     | [job] job monitor thread has finished
[2026-01-10 20:04:40] 2026-01-11 01:04:04,524 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 20:04:40] 2026-01-11 01:04:04,532 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 20:04:40] 2026-01-11 01:04:04,570 | INFO     | [job] control thread has finished
[2026-01-10 20:04:40] 2026-01-11 01:04:04,680 | INFO     | [payload] control thread has finished
[2026-01-10 20:04:40] 2026-01-11 01:04:04,684 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 20:04:40] 2026-01-11 01:04:04,703 | INFO     | [payload] failed_post thread has finished
[2026-01-10 20:04:40] 2026-01-11 01:04:04,981 | INFO     | [data] copytool_out thread has finished
[2026-01-10 20:04:40] 2026-01-11 01:04:05,230 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 20:04:40] 2026-01-11 01:04:05,230 | INFO     | [data] copytool_in thread has finished
[2026-01-10 20:04:40] 2026-01-11 01:04:05,324 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 20:04:40] 2026-01-11 01:04:05,613 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 20:04:40] 2026-01-11 01:04:06,330 | INFO     | [job] queue monitor thread has finished
[2026-01-10 20:04:40] 2026-01-11 01:04:09,622 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 20:04:40] 2026-01-11 01:04:30,535 | INFO     | [monitor] cgroup control has ended
[2026-01-10 20:04:40] 2026-01-11 01:04:31,833 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140356458022720)>', '<ExcThread(monitor, started 140355831850752)>']
[2026-01-10 20:04:40] 2026-01-11 01:04:35,000 | INFO     | PID=95141 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 20:04:40] 2026-01-11 01:04:35,000 | INFO     | .. there are 9 such processes running
[2026-01-10 20:04:40] 2026-01-11 01:04:35,001 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 20:04:40] 2026-01-11 01:04:35,001 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 20:04:40] 2026-01-11 01:04:35,001 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 20:04:40] 2026-01-11 01:04:35,001 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 20:04:40] 2026-01-11 01:04:35,001 | INFO     | [monitor] control thread has ended
[2026-01-10 20:04:40] 2026-01-11 01:04:36,859 | INFO     | all workflow threads have been joined
[2026-01-10 20:04:40] 2026-01-11 01:04:36,860 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 20:04:40] 2026-01-11 01:04:36,860 | INFO     | traces error code: 0
[2026-01-10 20:04:40] 2026-01-11 01:04:36,860 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 20:04:40] 2026-01-11 01:04:38,076 [wrapper] ==== pilot stdout END ====
[2026-01-10 20:04:40] 2026-01-11 01:04:38,156 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 20:04:40] 2026-01-11 01:04:38,181 [wrapper] pilotpid: 95141
[2026-01-10 20:04:40] 2026-01-11 01:04:38,221 [wrapper] Pilot exit status: 0
[2026-01-10 20:04:40] 2026-01-11 01:04:38,343 [wrapper] pandaids: 6965803381
[2026-01-10 20:04:40] 2026-01-11 01:04:38,938 [wrapper] cleanup supervisor_pilot  319669 95142
[2026-01-10 20:04:40] 2026-01-11 01:04:38,956 [wrapper] Test setup, not cleaning
[2026-01-10 20:04:40] 2026-01-11 01:04:38,977 [wrapper] apfmon messages muted
[2026-01-10 20:04:40] 2026-01-11 01:04:39,023 [wrapper] ==== wrapper stdout END ====
[2026-01-10 20:04:40] 2026-01-11 01:04:39,063 [wrapper] ==== wrapper stderr END ====
[2026-01-10 20:04:40]  *** Error codes and diagnostics ***
[2026-01-10 20:04:40]     "exeErrorCode": 0,
[2026-01-10 20:04:40]     "exeErrorDiag": "",
[2026-01-10 20:04:40]     "pilotErrorCode": 0,
[2026-01-10 20:04:40]     "pilotErrorDiag": "",
[2026-01-10 20:04:40]  *** Listing of results directory ***
[2026-01-10 20:04:40] total 430824
[2026-01-10 20:04:40] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 18:00 pilot3.tar.gz
[2026-01-10 20:04:40] -rwx------. 1 boincer umatlas     36322 Jan 10 18:05 runpilot2-wrapper.sh
[2026-01-10 20:04:40] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 18:05 queuedata.json
[2026-01-10 20:04:40] -rw-r--r--. 1 boincer umatlas       100 Jan 10 18:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 20:04:40] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 18:22 run_atlas
[2026-01-10 20:04:40] -rw-r--r--. 1 boincer umatlas       105 Jan 10 18:22 job.xml
[2026-01-10 20:04:40] -rw-r--r--. 2 boincer umatlas 391498270 Jan 10 18:22 EVNT.47962006._000035.pool.root.1
[2026-01-10 20:04:40] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 18:22 start_atlas.sh
[2026-01-10 20:04:40] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 18:22 shared
[2026-01-10 20:04:40] -rw-r--r--. 2 boincer umatlas    592606 Jan 10 18:22 input.tar.gz
[2026-01-10 20:04:40] -rw-r--r--. 1 boincer umatlas         0 Jan 10 18:22 boinc_lockfile
[2026-01-10 20:04:40] -rw-r--r--. 1 boincer umatlas      2889 Jan 10 18:22 pandaJob.out
[2026-01-10 20:04:40] -rw-------. 1 boincer umatlas        57 Jan 10 18:22 setup.sh.local
[2026-01-10 20:04:40] -rw-------. 1 boincer umatlas    989548 Jan 10 18:24 agis_schedconf.cvmfs.json
[2026-01-10 20:04:40] -rw-------. 1 boincer umatlas   1516240 Jan 10 18:24 agis_ddmendpoints.agis.ALL.json
[2026-01-10 20:04:40] drwx------. 5 boincer umatlas      4096 Jan 10 18:24 pilot3
[2026-01-10 20:04:40] -rw-r--r--. 1 boincer umatlas       529 Jan 10 19:50 boinc_task_state.xml
[2026-01-10 20:04:40] -rw-------. 1 boincer umatlas  41674107 Jan 10 20:02 HITS.47962010._002833.pool.root.1
[2026-01-10 20:04:40] -rw-------. 1 boincer umatlas      1041 Jan 10 20:03 memory_monitor_summary.json
[2026-01-10 20:04:40] -rw-------. 1 boincer umatlas   1218957 Jan 10 20:03 log.47962010._002833.job.log.tgz.1
[2026-01-10 20:04:40] -rw-------. 1 boincer umatlas        95 Jan 10 20:03 pilot_heartbeat.json
[2026-01-10 20:04:40] -rw-------. 1 boincer umatlas      8574 Jan 10 20:04 heartbeat.json
[2026-01-10 20:04:40] -rw-r--r--. 1 boincer umatlas      6843 Jan 10 20:04 init_data.xml
[2026-01-10 20:04:40] -rw-------. 1 boincer umatlas      4821 Jan 10 20:04 pilotlog.txt
[2026-01-10 20:04:40] -rw-------. 1 boincer umatlas    816762 Jan 10 20:04 log.47962010._002833.job.log.1
[2026-01-10 20:04:40] -rw-r--r--. 1 boincer umatlas        27 Jan 10 20:04 wrapper_checkpoint.txt
[2026-01-10 20:04:40] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 20:04 boinc_mmap_file
[2026-01-10 20:04:40] -rw-------. 1 boincer umatlas       353 Jan 10 20:04 output.list
[2026-01-10 20:04:40] -rw-r--r--. 1 boincer umatlas       620 Jan 10 20:04 runtime_log
[2026-01-10 20:04:40] -rw-------. 1 boincer umatlas   2058240 Jan 10 20:04 result.tar.gz
[2026-01-10 20:04:40] -rw-------. 1 boincer umatlas       652 Jan 10 20:04 X7KLDmJCxy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmDfhKDmiVdkMo.diag
[2026-01-10 20:04:40] -rw-r--r--. 1 boincer umatlas      9347 Jan 10 20:04 runtime_log.err
[2026-01-10 20:04:40] -rw-r--r--. 1 boincer umatlas     22493 Jan 10 20:04 stderr.txt
[2026-01-10 20:04:40] HITS file was successfully produced:
[2026-01-10 20:04:40] -rw-------. 1 boincer umatlas 41674107 Jan 10 20:02 shared/HITS.pool.root.1
[2026-01-10 20:04:40]  *** Contents of shared directory: ***
[2026-01-10 20:04:40] total 425632
[2026-01-10 20:04:40] -rw-r--r--. 2 boincer umatlas 391498270 Jan 10 18:22 ATLAS.root_0
[2026-01-10 20:04:40] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 18:22 start_atlas.sh
[2026-01-10 20:04:40] -rw-r--r--. 2 boincer umatlas    592606 Jan 10 18:22 input.tar.gz
[2026-01-10 20:04:40] -rw-------. 1 boincer umatlas  41674107 Jan 10 20:02 HITS.pool.root.1
[2026-01-10 20:04:40] -rw-------. 1 boincer umatlas   2058240 Jan 10 20:04 result.tar.gz
20:04:41 (89379): run_atlas exited; CPU time 13757.945061
20:04:41 (89379): called boinc_finish(0)

</stderr_txt>
]]>

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