Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:09:06 (1562600): wrapper (7.7.26015): starting
18:09:06 (1562600): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 18:09:06] Arguments: --nthreads 8
[2026-01-10 18:09:06] Threads: 8
[2026-01-10 18:09:06] Checking for CVMFS
[2026-01-10 18:09:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 18:09:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 18:09:06] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 18:09:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 18:09:06] 2.10.1.0 4440 317312 157424 154994 0 1 15662034 18432001 1 130560 2 334663800 99.988 12540194 7098 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2026-01-10 18:09:06] CVMFS is ok
[2026-01-10 18:09:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 18:09:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 18:09:06] Further information can be found at the LHC@home message board.
[2026-01-10 18:09:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 18:09:06] Checking for apptainer binary...
[2026-01-10 18:09:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 18:09:06] Running /usr/bin/apptainer --version
[2026-01-10 18:09:06] apptainer version 1.1.9-1.el8
[2026-01-10 18:09:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 18:09:07] c-16-31.aglt2.org
[2026-01-10 18:09:07] apptainer works
[2026-01-10 18:09:07] Set ATHENA_PROC_NUMBER=8
[2026-01-10 18:09:07] Set ATHENA_CORE_NUMBER=8
[2026-01-10 18:09:07] Starting ATLAS job with PandaID=6965803386
[2026-01-10 18:09:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 19:20:29]  *** The last 200 lines of the pilot log: ***
[2026-01-10 19:20:29]  lfn=log.47962010._002838.job.log.tgz.1
[2026-01-10 19:20:29]  mtime=0
[2026-01-10 19:20:29]  protocol_id=None
[2026-01-10 19:20:29]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-10 19:20:29]  replicas=None
[2026-01-10 19:20:29]  scope=mc16_13TeV
[2026-01-10 19:20:29]  status=None
[2026-01-10 19:20:29]  status_code=0
[2026-01-10 19:20:29]  storage_token=
[2026-01-10 19:20:29]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6965803386/log.47962010._002838.job.log.tgz.1
[2026-01-10 19:20:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/e1/31/log.47962010._002838.job.log.tgz.1
[2026-01-10 19:20:29]  workdir=None
[2026-01-10 19:20:29] ]
[2026-01-10 19:20:29] 2026-01-11 00:19:42,499 | INFO     | transferring file log.47962010._002838.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6965803386/log.47962010._002838.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-10 19:20:29] 2026-01-11 00:19:42,500 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6965803386/log.47962010._002838.job.log.tgz.1 /tmp/boinchome/slots/0/log.47962010._002838.job
[2026-01-10 19:20:29] 2026-01-11 00:19:42,513 | INFO     | adding to output.list: log.47962010._002838.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/e1/31/log.47962010._002838.job.log.tgz.
[2026-01-10 19:20:29] 2026-01-11 00:19:42,513 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 19:20:29] 2026-01-11 00:19:42,514 | INFO     | summary of transferred files:
[2026-01-10 19:20:29] 2026-01-11 00:19:42,514 | INFO     |  -- lfn=log.47962010._002838.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 19:20:29] 2026-01-11 00:19:42,514 | INFO     | stage-out finished correctly
[2026-01-10 19:20:29] 2026-01-11 00:19:44,162 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 19:20:29] 2026-01-11 00:19:44,303 | INFO     | time since job start (4228s) is within the limit (349056.0s)
[2026-01-10 19:20:29] 2026-01-11 00:19:45,538 | INFO     | PID=1569546 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 19:20:29] 2026-01-11 00:19:45,538 | INFO     | .. there are 4 such processes running
[2026-01-10 19:20:29] 2026-01-11 00:19:46,538 | INFO     | time since job start (4230s) is within the limit (349056.0s)
[2026-01-10 19:20:29] 2026-01-11 00:19:46,653 | INFO     | job 6965803386 has state=finished
[2026-01-10 19:20:29] 2026-01-11 00:19:46,653 | INFO     | preparing for final server update for job 6965803386 in state='finished'
[2026-01-10 19:20:29] 2026-01-11 00:19:46,654 | INFO     | this job has now completed (state=finished)
[2026-01-10 19:20:29] 2026-01-11 00:19:46,654 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 19:20:29] 2026-01-11 00:19:46,654 | INFO     | log transfer has been attempted: DONE
[2026-01-10 19:20:29] 2026-01-11 00:19:46,654 | INFO     | job 6965803386 has finished - writing final server update
[2026-01-10 19:20:29] 2026-01-11 00:19:46,654 | INFO     | total number of processed events: 50 (read)
[2026-01-10 19:20:29] 2026-01-11 00:19:46,655 | INFO     | executing command: lscpu
[2026-01-10 19:20:29] 2026-01-11 00:19:46,705 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 19:20:29] 2026-01-11 00:19:47,248 | WARNING  | process 1595755 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 19:20:29] 2026-01-11 00:19:47,249 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6965803386/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 19:20:29] 2026-01-11 00:19:47,433 | INFO     | number of running child processes to parent process 1595755: 1
[2026-01-10 19:20:29] 2026-01-11 00:19:47,433 | INFO     | maximum number of monitored processes: 14
[2026-01-10 19:20:29] 2026-01-11 00:19:48,545 | INFO     | time since job start (4232s) is within the limit (349056.0s)
[2026-01-10 19:20:29] 2026-01-11 00:19:49,711 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-10 19:20:29] 2026-01-11 00:19:49,729 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 3246.86185
[2026-01-10 19:20:29] 2026-01-11 00:19:49,733 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6965803386/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 19:20:29] 2026-01-11 00:19:49,733 | INFO     | extracted standard info from prmon json
[2026-01-10 19:20:29] 2026-01-11 00:19:49,734 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 19:20:29] 2026-01-11 00:19:49,734 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 19:20:29] 2026-01-11 00:19:49,735 | INFO     | fitting pss+swap vs Time
[2026-01-10 19:20:29] 2026-01-11 00:19:49,735 | INFO     | sum of square deviations: 73882315.5
[2026-01-10 19:20:29] 2026-01-11 00:19:49,736 | INFO     | sum of deviations: 1884379487.0000007
[2026-01-10 19:20:29] 2026-01-11 00:19:49,736 | INFO     | mean x: 1768088745.5
[2026-01-10 19:20:29] 2026-01-11 00:19:49,736 | INFO     | mean y: 2535914.1612903224
[2026-01-10 19:20:29] 2026-01-11 00:19:49,736 | INFO     | intersect: -45092831504.524506
[2026-01-10 19:20:29] 2026-01-11 00:19:49,736 | INFO     | chi2: 0.2546822587991224
[2026-01-10 19:20:29] 2026-01-11 00:19:49,736 | INFO     | current memory leak: 25.51 B/s (using 62 data points, chi2=0.25)
[2026-01-10 19:20:29] 2026-01-11 00:19:49,736 | INFO     | could have reported an average CPU frequency of 3141 MHz (6 samples)
[2026-01-10 19:20:29] 2026-01-11 00:19:49,737 | INFO     | ..............................
[2026-01-10 19:20:29] 2026-01-11 00:19:49,737 | INFO     | . Timing measurements:
[2026-01-10 19:20:29] 2026-01-11 00:19:49,737 | INFO     | . get job = 0 s
[2026-01-10 19:20:29] 2026-01-11 00:19:49,737 | INFO     | . initial setup = 2 s
[2026-01-10 19:20:29] 2026-01-11 00:19:49,737 | INFO     | . payload setup = 5 s
[2026-01-10 19:20:29] 2026-01-11 00:19:49,737 | INFO     | . stage-in = 0 s
[2026-01-10 19:20:29] 2026-01-11 00:19:49,737 | INFO     | . payload execution = 4202 s
[2026-01-10 19:20:29] 2026-01-11 00:19:49,737 | INFO     | . stage-out = 0 s
[2026-01-10 19:20:29] 2026-01-11 00:19:49,737 | INFO     | . log creation = 0 s
[2026-01-10 19:20:29] 2026-01-11 00:19:49,737 | INFO     | ..............................
[2026-01-10 19:20:29] 2026-01-11 00:19:49,802 | INFO     | 
[2026-01-10 19:20:29] 2026-01-11 00:19:49,802 | INFO     | job summary report
[2026-01-10 19:20:29] 2026-01-11 00:19:49,802 | INFO     | --------------------------------------------------
[2026-01-10 19:20:29] 2026-01-11 00:19:49,802 | INFO     | PanDA job id: 6965803386
[2026-01-10 19:20:29] 2026-01-11 00:19:49,802 | INFO     | task id: 47962010
[2026-01-10 19:20:29] 2026-01-11 00:19:49,803 | INFO     | errors: (none)
[2026-01-10 19:20:29] 2026-01-11 00:19:49,803 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 19:20:29] 2026-01-11 00:19:49,803 | INFO     | pilot state: finished 
[2026-01-10 19:20:29] 2026-01-11 00:19:49,803 | INFO     | transexitcode: 0
[2026-01-10 19:20:29] 2026-01-11 00:19:49,803 | INFO     | exeerrorcode: 0
[2026-01-10 19:20:29] 2026-01-11 00:19:49,803 | INFO     | exeerrordiag: 
[2026-01-10 19:20:29] 2026-01-11 00:19:49,803 | INFO     | exitcode: 0
[2026-01-10 19:20:29] 2026-01-11 00:19:49,803 | INFO     | exitmsg: OK
[2026-01-10 19:20:29] 2026-01-11 00:19:49,803 | INFO     | cpuconsumptiontime: 28084 s
[2026-01-10 19:20:29] 2026-01-11 00:19:49,803 | INFO     | nevents: 50
[2026-01-10 19:20:29] 2026-01-11 00:19:49,804 | INFO     | neventsw: 0
[2026-01-10 19:20:29] 2026-01-11 00:19:49,804 | INFO     | pid: 1595755
[2026-01-10 19:20:29] 2026-01-11 00:19:49,804 | INFO     | pgrp: 1595755
[2026-01-10 19:20:29] 2026-01-11 00:19:49,804 | INFO     | corecount: 8
[2026-01-10 19:20:29] 2026-01-11 00:19:49,804 | INFO     | event service: False
[2026-01-10 19:20:29] 2026-01-11 00:19:49,804 | INFO     | sizes: {0: 2284567, 3: 2284829, 11: 2284857, 4211: 2320506, 4213: 2320506, 4219: 2320752}
[2026-01-10 19:20:29] 2026-01-11 00:19:49,804 | INFO     | --------------------------------------------------
[2026-01-10 19:20:29] 2026-01-11 00:19:49,804 | INFO     | 
[2026-01-10 19:20:29] 2026-01-11 00:19:49,804 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-10 19:20:29] 2026-01-11 00:19:49,819 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 19:20:29] 2026-01-11 00:19:49,819 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 19:20:29] 2026-01-11 00:19:49,819 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 19:20:29] 2026-01-11 00:19:49,819 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 19:20:29] 2026-01-11 00:19:49,819 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 19:20:29] 2026-01-11 00:19:49,819 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 19:20:29] 2026-01-11 00:19:49,819 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 19:20:29] 2026-01-11 00:19:49,820 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 19:20:29] 2026-01-11 00:19:49,820 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 19:20:29] 2026-01-11 00:19:49,820 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 19:20:29] 2026-01-11 00:19:49,820 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 19:20:29] 2026-01-11 00:19:49,820 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 19:20:29] 2026-01-11 00:19:49,820 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 19:20:29] 2026-01-11 00:19:49,820 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 19:20:29] 2026-01-11 00:19:49,820 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 19:20:29] 2026-01-11 00:19:49,820 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 19:20:29] 2026-01-11 00:19:49,820 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 19:20:29] 2026-01-11 00:19:49,821 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 19:20:29] 2026-01-11 00:19:49,821 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 19:20:29] 2026-01-11 00:19:49,821 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 19:20:29] 2026-01-11 00:19:49,821 | INFO     | job 6965803386 has completed (purged errors)
[2026-01-10 19:20:29] 2026-01-11 00:19:49,821 | INFO     | overall cleanup function is called
[2026-01-10 19:20:29] 2026-01-11 00:19:50,834 | INFO     | --- collectZombieJob: --- 10, [1595755]
[2026-01-10 19:20:29] 2026-01-11 00:19:50,834 | INFO     | zombie collector waiting for pid 1595755
[2026-01-10 19:20:29] 2026-01-11 00:19:50,834 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 19:20:29] 2026-01-11 00:19:50,834 | INFO     | collected zombie processes
[2026-01-10 19:20:29] 2026-01-11 00:19:50,834 | INFO     | will attempt to kill all subprocesses of pid=1595755
[2026-01-10 19:20:29] 2026-01-11 00:19:51,016 | INFO     | process IDs to be killed: [1595755] (in reverse order)
[2026-01-10 19:20:29] 2026-01-11 00:19:51,083 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 19:20:29] 2026-01-11 00:19:51,084 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 19:20:29] 2026-01-11 00:19:51,095 | INFO     | did not find any defunct processes belonging to 1595755
[2026-01-10 19:20:29] 2026-01-11 00:19:51,103 | INFO     | did not find any defunct processes belonging to 1595755
[2026-01-10 19:20:29] 2026-01-11 00:19:51,103 | INFO     | ready for new job
[2026-01-10 19:20:29] 2026-01-11 00:19:51,103 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 19:20:29] 2026-01-11 00:19:51,104 | INFO     | ***************************************
[2026-01-10 19:20:29] 2026-01-11 00:19:51,104 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 19:20:29] 2026-01-11 00:19:51,105 | INFO     | ***************************************
[2026-01-10 19:20:29] 2026-01-11 00:19:51,105 | INFO     | 
[2026-01-10 19:20:29] 2026-01-11 00:19:51,118 | INFO     | architecture information:
[2026-01-10 19:20:29] 2026-01-11 00:19:51,118 | INFO     | executing command: cat /etc/os-release
[2026-01-10 19:20:29] 2026-01-11 00:19:51,128 | INFO     | cat /etc/os-release:
[2026-01-10 19:20:29] NAME="CentOS Linux"
[2026-01-10 19:20:29] VERSION="7 (Core)"
[2026-01-10 19:20:29] ID="centos"
[2026-01-10 19:20:29] ID_LIKE="rhel fedora"
[2026-01-10 19:20:29] VERSION_ID="7"
[2026-01-10 19:20:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 19:20:29] ANSI_COLOR="0;31"
[2026-01-10 19:20:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 19:20:29] HOME_URL="https://www.centos.org/"
[2026-01-10 19:20:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 19:20:29] 
[2026-01-10 19:20:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 19:20:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 19:20:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 19:20:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 19:20:29] 
[2026-01-10 19:20:29] 2026-01-11 00:19:51,128 | INFO     | ***************************************
[2026-01-10 19:20:29] 2026-01-11 00:19:51,631 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-10 19:20:29] 2026-01-11 00:19:51,641 | INFO     | sufficient remaining disk space (102881034240 B)
[2026-01-10 19:20:29] 2026-01-11 00:19:51,641 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 19:20:29] 2026-01-11 00:19:51,642 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 19:20:29] 2026-01-11 00:19:51,642 | INFO     | update_server=False
[2026-01-10 19:20:29] 2026-01-11 00:19:51,642 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 19:20:29] 2026-01-11 00:19:51,642 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 19:20:29] 2026-01-11 00:19:51,642 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 19:20:29] 2026-01-11 00:19:51,643 | INFO     | aborting loop
[2026-01-10 19:20:29] 2026-01-11 00:19:52,505 | INFO     | all data control threads have been joined
[2026-01-10 19:20:29] 2026-01-11 00:19:52,647 | INFO     | [job] retrieve thread has finished
[2026-01-10 19:20:29] 2026-01-11 00:19:52,647 | INFO     | [job] queue monitor thread has finished
[2026-01-10 19:20:29] 2026-01-11 00:19:52,647 | INFO     | [job] job monitor thread has finished
[2026-01-10 19:20:29] 2026-01-11 00:19:52,687 | INFO     | [payload] failed_post thread has finished
[2026-01-10 19:20:29] 2026-01-11 00:19:52,946 | INFO     | all payload control threads have been joined
[2026-01-10 19:20:29] 2026-01-11 00:19:53,042 | INFO     | all job control threads have been joined
[2026-01-10 19:20:29] 2026-01-11 00:19:53,071 | INFO     | [data] copytool_in thread has finished
[2026-01-10 19:20:29] 2026-01-11 00:19:53,091 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 19:20:29] 2026-01-11 00:19:53,235 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 19:20:29] 2026-01-11 00:19:53,369 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 19:20:29] 2026-01-11 00:19:53,389 | INFO     | [job] validate thread has finished
[2026-01-10 19:20:29] 2026-01-11 00:19:53,434 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 19:20:29] 2026-01-11 00:19:53,511 | INFO     | [data] control thread has finished
[2026-01-10 19:20:29] 2026-01-11 00:19:53,952 | INFO     | [payload] control thread has finished
[2026-01-10 19:20:29] 2026-01-11 00:19:54,047 | INFO     | [job] control thread has finished
[2026-01-10 19:20:29] 2026-01-11 00:19:54,204 | INFO     | [payload] validate_post thread has finished
[2026-01-10 19:20:29] 2026-01-11 00:19:54,732 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 19:20:29] 2026-01-11 00:19:55,097 | INFO     | [data] copytool_out thread has finished
[2026-01-10 19:20:29] 2026-01-11 00:19:58,738 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 19:20:29] 2026-01-11 00:20:02,651 | INFO     | job.realtimelogging is not enabled
[2026-01-10 19:20:29] 2026-01-11 00:20:03,656 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 19:20:29] 2026-01-11 00:20:21,837 | INFO     | PID=1569546 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 19:20:29] 2026-01-11 00:20:21,837 | INFO     | .. there are 4 such processes running
[2026-01-10 19:20:29] 2026-01-11 00:20:21,838 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 19:20:29] 2026-01-11 00:20:21,838 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 19:20:29] 2026-01-11 00:20:21,838 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 19:20:29] 2026-01-11 00:20:23,383 | INFO     | [monitor] cgroup control has ended
[2026-01-10 19:20:29] 2026-01-11 00:20:23,805 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139809615673152)>', '<ExcThread(monitor, started 139808903001856)>']
[2026-01-10 19:20:29] 2026-01-11 00:20:23,848 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 19:20:29] 2026-01-11 00:20:23,848 | INFO     | [monitor] control thread has ended
[2026-01-10 19:20:29] 2026-01-11 00:20:28,826 | INFO     | all workflow threads have been joined
[2026-01-10 19:20:29] 2026-01-11 00:20:28,826 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 19:20:29] 2026-01-11 00:20:28,826 | INFO     | traces error code: 0
[2026-01-10 19:20:29] 2026-01-11 00:20:28,827 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 19:20:29] 2026-01-11 00:20:28,896 [wrapper] ==== pilot stdout END ====
[2026-01-10 19:20:29] 2026-01-11 00:20:28,898 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 19:20:29] 2026-01-11 00:20:28,900 [wrapper] pilotpid: 1569546
[2026-01-10 19:20:29] 2026-01-11 00:20:28,902 [wrapper] Pilot exit status: 0
[2026-01-10 19:20:29] 2026-01-11 00:20:28,909 [wrapper] pandaids: 6965803386
[2026-01-10 19:20:29] 2026-01-11 00:20:28,956 [wrapper] cleanup supervisor_pilot 2597443 1569547
[2026-01-10 19:20:29] 2026-01-11 00:20:28,958 [wrapper] Test setup, not cleaning
[2026-01-10 19:20:29] 2026-01-11 00:20:28,960 [wrapper] apfmon messages muted
[2026-01-10 19:20:29] 2026-01-11 00:20:28,962 [wrapper] ==== wrapper stdout END ====
[2026-01-10 19:20:29] 2026-01-11 00:20:28,964 [wrapper] ==== wrapper stderr END ====
[2026-01-10 19:20:29]  *** Error codes and diagnostics ***
[2026-01-10 19:20:29]     "exeErrorCode": 0,
[2026-01-10 19:20:29]     "exeErrorDiag": "",
[2026-01-10 19:20:29]     "pilotErrorCode": 0,
[2026-01-10 19:20:29]     "pilotErrorDiag": "",
[2026-01-10 19:20:29]  *** Listing of results directory ***
[2026-01-10 19:20:29] total 432924
[2026-01-10 19:20:29] -rw-r--r-- 1 boincer umatlas    579449 Jan 10 18:00 pilot3.tar.gz
[2026-01-10 19:20:29] -rwx------ 1 boincer umatlas     36322 Jan 10 18:05 runpilot2-wrapper.sh
[2026-01-10 19:20:29] -rw-r--r-- 1 boincer umatlas      5112 Jan 10 18:05 queuedata.json
[2026-01-10 19:20:29] -rw-r--r-- 1 boincer umatlas       100 Jan 10 18:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 19:20:29] -rwxr-xr-x 1 boincer umatlas      7986 Jan 10 18:09 run_atlas
[2026-01-10 19:20:29] -rw-r--r-- 1 boincer umatlas       105 Jan 10 18:09 job.xml
[2026-01-10 19:20:29] -rw-r--r-- 2 boincer umatlas 391498270 Jan 10 18:09 EVNT.47962006._000035.pool.root.1
[2026-01-10 19:20:29] -rw-r--r-- 2 boincer umatlas     15847 Jan 10 18:09 start_atlas.sh
[2026-01-10 19:20:29] drwxrwx--x 2 boincer umatlas      4096 Jan 10 18:09 shared
[2026-01-10 19:20:29] -rw-r--r-- 2 boincer umatlas    592608 Jan 10 18:09 input.tar.gz
[2026-01-10 19:20:29] -rw-r--r-- 1 boincer umatlas         0 Jan 10 18:09 boinc_lockfile
[2026-01-10 19:20:29] -rw-r--r-- 1 boincer umatlas      2889 Jan 10 18:09 pandaJob.out
[2026-01-10 19:20:29] -rw------- 1 boincer umatlas        57 Jan 10 18:09 setup.sh.local
[2026-01-10 19:20:29] -rw------- 1 boincer umatlas    989548 Jan 10 18:09 agis_schedconf.cvmfs.json
[2026-01-10 19:20:29] -rw------- 1 boincer umatlas   1516240 Jan 10 18:09 agis_ddmendpoints.agis.ALL.json
[2026-01-10 19:20:29] drwx------ 5 boincer umatlas      4096 Jan 10 18:09 pilot3
[2026-01-10 19:20:29] -rw-r--r-- 1 boincer umatlas       529 Jan 10 19:10 boinc_task_state.xml
[2026-01-10 19:20:29] -rw-r--r-- 1 boincer umatlas      6012 Jan 10 19:13 init_data.xml
[2026-01-10 19:20:29] -rw------- 1 boincer umatlas  44212596 Jan 10 19:19 HITS.47962010._002838.pool.root.1
[2026-01-10 19:20:29] -rw------- 1 boincer umatlas      1051 Jan 10 19:19 memory_monitor_summary.json
[2026-01-10 19:20:29] -rw------- 1 boincer umatlas   1199477 Jan 10 19:19 log.47962010._002838.job.log.tgz.1
[2026-01-10 19:20:29] -rw------- 1 boincer umatlas        95 Jan 10 19:19 pilot_heartbeat.json
[2026-01-10 19:20:29] -rw------- 1 boincer umatlas      8579 Jan 10 19:19 heartbeat.json
[2026-01-10 19:20:29] -rw-r--r-- 1 boincer umatlas        27 Jan 10 19:20 wrapper_checkpoint.txt
[2026-01-10 19:20:29] -rw-r--r-- 1 boincer umatlas      8192 Jan 10 19:20 boinc_mmap_file
[2026-01-10 19:20:29] -rw------- 1 boincer umatlas      4896 Jan 10 19:20 pilotlog.txt
[2026-01-10 19:20:29] -rw------- 1 boincer umatlas    640806 Jan 10 19:20 log.47962010._002838.job.log.1
[2026-01-10 19:20:29] -rw------- 1 boincer umatlas       353 Jan 10 19:20 output.list
[2026-01-10 19:20:29] -rw-r--r-- 1 boincer umatlas       620 Jan 10 19:20 runtime_log
[2026-01-10 19:20:29] -rw------- 1 boincer umatlas   1863680 Jan 10 19:20 result.tar.gz
[2026-01-10 19:20:29] -rw-r--r-- 1 boincer umatlas      9337 Jan 10 19:20 runtime_log.err
[2026-01-10 19:20:29] -rw------- 1 boincer umatlas       657 Jan 10 19:20 k8OLDmJCxy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGfhKDmLkyfqm.diag
[2026-01-10 19:20:29] -rw-r--r-- 1 boincer umatlas     21759 Jan 10 19:20 stderr.txt
[2026-01-10 19:20:29] HITS file was successfully produced:
[2026-01-10 19:20:29] -rw------- 1 boincer umatlas 44212596 Jan 10 19:19 shared/HITS.pool.root.1
[2026-01-10 19:20:29]  *** Contents of shared directory: ***
[2026-01-10 19:20:29] total 427924
[2026-01-10 19:20:29] -rw-r--r-- 2 boincer umatlas 391498270 Jan 10 18:09 ATLAS.root_0
[2026-01-10 19:20:29] -rw-r--r-- 2 boincer umatlas     15847 Jan 10 18:09 start_atlas.sh
[2026-01-10 19:20:29] -rw-r--r-- 2 boincer umatlas    592608 Jan 10 18:09 input.tar.gz
[2026-01-10 19:20:29] -rw------- 1 boincer umatlas  44212596 Jan 10 19:19 HITS.pool.root.1
[2026-01-10 19:20:29] -rw------- 1 boincer umatlas   1863680 Jan 10 19:20 result.tar.gz
19:20:30 (1562600): run_atlas exited; CPU time 27974.413355
19:20:30 (1562600): called boinc_finish(0)

</stderr_txt>
]]>

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