Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:09:13 (964627): wrapper (7.7.26015): starting
18:09:13 (964627): wrapper: running run_atlas (--nthreads 11)
[2026-01-10 18:09:13] Arguments: --nthreads 11
[2026-01-10 18:09:13] Threads: 11
[2026-01-10 18:09:13] Checking for CVMFS
[2026-01-10 18:09:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 18:09:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 18:09:14] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 18:09:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 18:09:15] 2.13.3.0 8993 16274 123476 154994 0 380 27419356 40960001 24170 16776704 0 54361936 99.877 27861960 45441 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 18:09:15] CVMFS is ok
[2026-01-10 18:09:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 18:09:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 18:09:15] Further information can be found at the LHC@home message board.
[2026-01-10 18:09:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 18:09:15] Checking for apptainer binary...
[2026-01-10 18:09:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 18:09:15] Running /usr/bin/apptainer --version
[2026-01-10 18:09:15] apptainer version 1.4.5-2.el9
[2026-01-10 18:09:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 18:09:15] c-208-40.aglt2.org
[2026-01-10 18:09:15] apptainer works
[2026-01-10 18:09:15] Set ATHENA_PROC_NUMBER=11
[2026-01-10 18:09:15] Set ATHENA_CORE_NUMBER=11
[2026-01-10 18:09:15] Starting ATLAS job with PandaID=6965803439
[2026-01-10 18:09:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 19:04:14]  *** The last 200 lines of the pilot log: ***
[2026-01-10 19:04:14]  workdir=None
[2026-01-10 19:04:14] ]
[2026-01-10 19:04:14] 2026-01-11 00:03:26,321 | INFO     | transferring file log.47962010._002891.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6965803439/log.47962010._002891.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-10 19:04:14] 2026-01-11 00:03:26,321 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6965803439/log.47962010._002891.job.log.tgz.1 /tmp/boinchome/slots/1/log.47962010._002891.job
[2026-01-10 19:04:14] 2026-01-11 00:03:26,341 | INFO     | adding to output.list: log.47962010._002891.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/25/ae/log.47962010._002891.job.log.tgz.
[2026-01-10 19:04:14] 2026-01-11 00:03:26,342 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 19:04:14] 2026-01-11 00:03:26,342 | INFO     | summary of transferred files:
[2026-01-10 19:04:14] 2026-01-11 00:03:26,342 | INFO     |  -- lfn=log.47962010._002891.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 19:04:14] 2026-01-11 00:03:26,342 | INFO     | stage-out finished correctly
[2026-01-10 19:04:14] 2026-01-11 00:03:26,408 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 19:04:14] 2026-01-11 00:03:26,428 | INFO     | monitor loop #214: job 0:6965803439 is in state 'finished'
[2026-01-10 19:04:14] 2026-01-11 00:03:26,428 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 19:04:14] 2026-01-11 00:03:26,995 | INFO     | job 6965803439 has state=finished
[2026-01-10 19:04:14] 2026-01-11 00:03:26,996 | INFO     | preparing for final server update for job 6965803439 in state='finished'
[2026-01-10 19:04:14] 2026-01-11 00:03:26,996 | INFO     | this job has now completed (state=finished)
[2026-01-10 19:04:14] 2026-01-11 00:03:26,996 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 19:04:14] 2026-01-11 00:03:26,996 | INFO     | log transfer has been attempted: DONE
[2026-01-10 19:04:14] 2026-01-11 00:03:26,996 | INFO     | job 6965803439 has finished - writing final server update
[2026-01-10 19:04:14] 2026-01-11 00:03:26,996 | INFO     | total number of processed events: 50 (read)
[2026-01-10 19:04:14] 2026-01-11 00:03:26,997 | INFO     | executing command: lscpu
[2026-01-10 19:04:14] 2026-01-11 00:03:27,126 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 19:04:14] 2026-01-11 00:03:27,965 | INFO     | time since job start (3224s) is within the limit (349056.0s)
[2026-01-10 19:04:14] 2026-01-11 00:03:28,935 | INFO     | monitor loop #215: job 0:6965803439 is in state 'finished'
[2026-01-10 19:04:14] 2026-01-11 00:03:28,938 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 19:04:14] 2026-01-11 00:03:29,972 | INFO     | time since job start (3226s) is within the limit (349056.0s)
[2026-01-10 19:04:14] 2026-01-11 00:03:31,448 | INFO     | monitor loop #216: job 0:6965803439 is in state 'finished'
[2026-01-10 19:04:14] 2026-01-11 00:03:31,448 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 19:04:14] 2026-01-11 00:03:31,979 | INFO     | time since job start (3228s) is within the limit (349056.0s)
[2026-01-10 19:04:14] 2026-01-11 00:03:33,953 | INFO     | monitor loop #217: job 0:6965803439 is in state 'finished'
[2026-01-10 19:04:14] 2026-01-11 00:03:33,953 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 19:04:14] 2026-01-11 00:03:33,987 | INFO     | time since job start (3230s) is within the limit (349056.0s)
[2026-01-10 19:04:14] 2026-01-11 00:03:35,994 | INFO     | time since job start (3232s) is within the limit (349056.0s)
[2026-01-10 19:04:14] 2026-01-11 00:03:36,458 | INFO     | monitor loop #218: job 0:6965803439 is in state 'finished'
[2026-01-10 19:04:14] 2026-01-11 00:03:36,458 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 19:04:14] 2026-01-11 00:03:38,039 | INFO     | PID=973656 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 19:04:14] 2026-01-11 00:03:38,039 | INFO     | .. there are 20 such processes running
[2026-01-10 19:04:14] 2026-01-11 00:03:38,963 | INFO     | monitor loop #219: job 0:6965803439 is in state 'finished'
[2026-01-10 19:04:14] 2026-01-11 00:03:38,963 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 19:04:14] 2026-01-11 00:03:39,007 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-10 19:04:14] 2026-01-11 00:03:39,028 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.132265625001
[2026-01-10 19:04:14] 2026-01-11 00:03:39,072 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6965803439/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 19:04:14] 2026-01-11 00:03:39,072 | INFO     | extracted standard info from prmon json
[2026-01-10 19:04:14] 2026-01-11 00:03:39,072 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 19:04:14] 2026-01-11 00:03:39,072 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 19:04:14] 2026-01-11 00:03:39,073 | INFO     | fitting pss+swap vs Time
[2026-01-10 19:04:14] 2026-01-11 00:03:39,073 | INFO     | sum of square deviations: 28202787.199999996
[2026-01-10 19:04:14] 2026-01-11 00:03:39,073 | INFO     | sum of deviations: -3512048794.2
[2026-01-10 19:04:14] 2026-01-11 00:03:39,074 | INFO     | mean x: 1768088298.4666667
[2026-01-10 19:04:14] 2026-01-11 00:03:39,074 | INFO     | mean y: 2715608.533333333
[2026-01-10 19:04:14] 2026-01-11 00:03:39,074 | INFO     | intersect: 220179974424.60477
[2026-01-10 19:04:14] 2026-01-11 00:03:39,074 | INFO     | chi2: 1.2451979682555028
[2026-01-10 19:04:14] 2026-01-11 00:03:39,074 | INFO     | current memory leak: -124.53 B/s (using 45 data points, chi2=1.25)
[2026-01-10 19:04:14] 2026-01-11 00:03:39,074 | INFO     | could have reported an average CPU frequency of 3800 MHz (5 samples)
[2026-01-10 19:04:14] 2026-01-11 00:03:39,074 | INFO     | ..............................
[2026-01-10 19:04:14] 2026-01-11 00:03:39,074 | INFO     | . Timing measurements:
[2026-01-10 19:04:14] 2026-01-11 00:03:39,074 | INFO     | . get job = 0 s
[2026-01-10 19:04:14] 2026-01-11 00:03:39,074 | INFO     | . initial setup = 3 s
[2026-01-10 19:04:14] 2026-01-11 00:03:39,074 | INFO     | . payload setup = 19 s
[2026-01-10 19:04:14] 2026-01-11 00:03:39,074 | INFO     | . stage-in = 0 s
[2026-01-10 19:04:14] 2026-01-11 00:03:39,074 | INFO     | . payload execution = 3167 s
[2026-01-10 19:04:14] 2026-01-11 00:03:39,074 | INFO     | . stage-out = 0 s
[2026-01-10 19:04:14] 2026-01-11 00:03:39,074 | INFO     | . log creation = 0 s
[2026-01-10 19:04:14] 2026-01-11 00:03:39,074 | INFO     | ..............................
[2026-01-10 19:04:14] 2026-01-11 00:03:39,075 | INFO     | time since job start (3236s) is within the limit (349056.0s)
[2026-01-10 19:04:14] 2026-01-11 00:03:39,387 | INFO     | 
[2026-01-10 19:04:14] 2026-01-11 00:03:39,387 | INFO     | job summary report
[2026-01-10 19:04:14] 2026-01-11 00:03:39,387 | INFO     | --------------------------------------------------
[2026-01-10 19:04:14] 2026-01-11 00:03:39,387 | INFO     | PanDA job id: 6965803439
[2026-01-10 19:04:14] 2026-01-11 00:03:39,387 | INFO     | task id: 47962010
[2026-01-10 19:04:14] 2026-01-11 00:03:39,387 | INFO     | errors: (none)
[2026-01-10 19:04:14] 2026-01-11 00:03:39,387 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 19:04:14] 2026-01-11 00:03:39,387 | INFO     | pilot state: finished 
[2026-01-10 19:04:14] 2026-01-11 00:03:39,387 | INFO     | transexitcode: 0
[2026-01-10 19:04:14] 2026-01-11 00:03:39,388 | INFO     | exeerrorcode: 0
[2026-01-10 19:04:14] 2026-01-11 00:03:39,388 | INFO     | exeerrordiag: 
[2026-01-10 19:04:14] 2026-01-11 00:03:39,388 | INFO     | exitcode: 0
[2026-01-10 19:04:14] 2026-01-11 00:03:39,388 | INFO     | exitmsg: OK
[2026-01-10 19:04:14] 2026-01-11 00:03:39,388 | INFO     | cpuconsumptiontime: 8474 s
[2026-01-10 19:04:14] 2026-01-11 00:03:39,388 | INFO     | nevents: 50
[2026-01-10 19:04:14] 2026-01-11 00:03:39,388 | INFO     | neventsw: 0
[2026-01-10 19:04:14] 2026-01-11 00:03:39,388 | INFO     | pid: 999838
[2026-01-10 19:04:14] 2026-01-11 00:03:39,388 | INFO     | pgrp: 999838
[2026-01-10 19:04:14] 2026-01-11 00:03:39,388 | INFO     | corecount: 11
[2026-01-10 19:04:14] 2026-01-11 00:03:39,388 | INFO     | event service: False
[2026-01-10 19:04:14] 2026-01-11 00:03:39,388 | INFO     | sizes: {0: 2284344, 1: 2284599, 12: 2284599, 15: 2284889, 22: 2284917, 3191: 2311300, 3193: 2320350, 3206: 2320572}
[2026-01-10 19:04:14] 2026-01-11 00:03:39,388 | INFO     | --------------------------------------------------
[2026-01-10 19:04:14] 2026-01-11 00:03:39,388 | INFO     | 
[2026-01-10 19:04:14] 2026-01-11 00:03:39,388 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-10 19:04:14] 2026-01-11 00:03:39,449 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 19:04:14] 2026-01-11 00:03:39,450 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 19:04:14] 2026-01-11 00:03:39,450 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 19:04:14] 2026-01-11 00:03:39,450 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 19:04:14] 2026-01-11 00:03:39,450 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 19:04:14] 2026-01-11 00:03:39,450 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 19:04:14] 2026-01-11 00:03:39,450 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 19:04:14] 2026-01-11 00:03:39,450 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 19:04:14] 2026-01-11 00:03:39,450 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 19:04:14] 2026-01-11 00:03:39,450 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 19:04:14] 2026-01-11 00:03:39,450 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 19:04:14] 2026-01-11 00:03:39,450 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 19:04:14] 2026-01-11 00:03:39,450 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 19:04:14] 2026-01-11 00:03:39,450 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 19:04:14] 2026-01-11 00:03:39,451 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 19:04:14] 2026-01-11 00:03:39,451 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 19:04:14] 2026-01-11 00:03:39,451 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 19:04:14] 2026-01-11 00:03:39,451 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 19:04:14] 2026-01-11 00:03:39,451 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 19:04:14] 2026-01-11 00:03:39,451 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 19:04:14] 2026-01-11 00:03:39,451 | INFO     | job 6965803439 has completed (purged errors)
[2026-01-10 19:04:14] 2026-01-11 00:03:39,451 | INFO     | overall cleanup function is called
[2026-01-10 19:04:14] 2026-01-11 00:03:40,469 | INFO     | --- collectZombieJob: --- 10, [999838]
[2026-01-10 19:04:14] 2026-01-11 00:03:40,469 | INFO     | zombie collector waiting for pid 999838
[2026-01-10 19:04:14] 2026-01-11 00:03:40,469 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 19:04:14] 2026-01-11 00:03:40,469 | INFO     | collected zombie processes
[2026-01-10 19:04:14] 2026-01-11 00:03:40,470 | INFO     | will attempt to kill all subprocesses of pid=999838
[2026-01-10 19:04:14] 2026-01-11 00:03:41,166 | INFO     | process IDs to be killed: [999838] (in reverse order)
[2026-01-10 19:04:14] 2026-01-11 00:03:41,639 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 19:04:14] 2026-01-11 00:03:41,639 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 19:04:14] 2026-01-11 00:03:41,692 | INFO     | did not find any defunct processes belonging to 999838
[2026-01-10 19:04:14] 2026-01-11 00:03:41,742 | INFO     | did not find any defunct processes belonging to 999838
[2026-01-10 19:04:14] 2026-01-11 00:03:41,742 | INFO     | ready for new job
[2026-01-10 19:04:14] 2026-01-11 00:03:41,742 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 19:04:14] 2026-01-11 00:03:41,746 | INFO     | ***************************************
[2026-01-10 19:04:14] 2026-01-11 00:03:41,746 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 19:04:14] 2026-01-11 00:03:41,746 | INFO     | ***************************************
[2026-01-10 19:04:14] 2026-01-11 00:03:41,746 | INFO     | 
[2026-01-10 19:04:14] 2026-01-11 00:03:41,759 | INFO     | architecture information:
[2026-01-10 19:04:14] 2026-01-11 00:03:41,766 | INFO     | executing command: cat /etc/os-release
[2026-01-10 19:04:14] 2026-01-11 00:03:41,813 | INFO     | cat /etc/os-release:
[2026-01-10 19:04:14] NAME="CentOS Linux"
[2026-01-10 19:04:14] VERSION="7 (Core)"
[2026-01-10 19:04:14] ID="centos"
[2026-01-10 19:04:14] ID_LIKE="rhel fedora"
[2026-01-10 19:04:14] VERSION_ID="7"
[2026-01-10 19:04:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 19:04:14] ANSI_COLOR="0;31"
[2026-01-10 19:04:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 19:04:14] HOME_URL="https://www.centos.org/"
[2026-01-10 19:04:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 19:04:14] 
[2026-01-10 19:04:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 19:04:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 19:04:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 19:04:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 19:04:14] 
[2026-01-10 19:04:14] 2026-01-11 00:03:41,814 | INFO     | ***************************************
[2026-01-10 19:04:14] 2026-01-11 00:03:42,317 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-10 19:04:14] 2026-01-11 00:03:42,436 | INFO     | sufficient remaining disk space (171016454144 B)
[2026-01-10 19:04:14] 2026-01-11 00:03:42,436 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 19:04:14] 2026-01-11 00:03:42,437 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 19:04:14] 2026-01-11 00:03:42,437 | INFO     | update_server=False
[2026-01-10 19:04:14] 2026-01-11 00:03:42,437 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 19:04:14] 2026-01-11 00:03:42,437 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 19:04:14] 2026-01-11 00:03:42,437 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 19:04:14] 2026-01-11 00:03:42,494 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 19:04:14] 2026-01-11 00:03:42,494 | INFO     | aborting loop
[2026-01-10 19:04:14] 2026-01-11 00:03:43,102 | INFO     | all payload control threads have been joined
[2026-01-10 19:04:14] 2026-01-11 00:03:43,205 | INFO     | all job control threads have been joined
[2026-01-10 19:04:14] 2026-01-11 00:03:43,442 | INFO     | [job] retrieve thread has finished
[2026-01-10 19:04:14] 2026-01-11 00:03:43,491 | INFO     | all data control threads have been joined
[2026-01-10 19:04:14] 2026-01-11 00:03:43,501 | INFO     | [job] job monitor thread has finished
[2026-01-10 19:04:14] 2026-01-11 00:03:43,629 | INFO     | [payload] validate_post thread has finished
[2026-01-10 19:04:14] 2026-01-11 00:03:44,084 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 19:04:14] 2026-01-11 00:03:44,108 | INFO     | [payload] control thread has finished
[2026-01-10 19:04:14] 2026-01-11 00:03:44,112 | INFO     | [payload] failed_post thread has finished
[2026-01-10 19:04:14] 2026-01-11 00:03:44,211 | INFO     | [job] control thread has finished
[2026-01-10 19:04:14] 2026-01-11 00:03:44,215 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 19:04:14] 2026-01-11 00:03:44,245 | INFO     | [data] copytool_in thread has finished
[2026-01-10 19:04:14] 2026-01-11 00:03:44,427 | INFO     | [job] validate thread has finished
[2026-01-10 19:04:14] 2026-01-11 00:03:44,443 | INFO     | [data] copytool_out thread has finished
[2026-01-10 19:04:14] 2026-01-11 00:03:44,496 | INFO     | [data] control thread has finished
[2026-01-10 19:04:14] 2026-01-11 00:03:44,787 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 19:04:14] 2026-01-11 00:03:44,889 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 19:04:14] 2026-01-11 00:03:45,221 | INFO     | [job] queue monitor thread has finished
[2026-01-10 19:04:14] 2026-01-11 00:03:46,445 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 19:04:14] 2026-01-11 00:03:48,795 | INFO     | [monitor] cgroup control has ended
[2026-01-10 19:04:14] 2026-01-11 00:03:52,870 | INFO     | job.realtimelogging is not enabled
[2026-01-10 19:04:14] 2026-01-11 00:03:53,875 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 19:04:14] 2026-01-11 00:03:54,030 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140523216361280)>', '<ExcThread(monitor, started 140522857420544)>']
[2026-01-10 19:04:14] 2026-01-11 00:03:59,056 | INFO     | all workflow threads have been joined
[2026-01-10 19:04:14] 2026-01-11 00:03:59,056 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 19:04:14] 2026-01-11 00:03:59,056 | INFO     | traces error code: 0
[2026-01-10 19:04:14] 2026-01-11 00:03:59,057 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 19:04:14] 2026-01-11 00:04:12,997 | INFO     | PID=973656 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 19:04:14] 2026-01-11 00:04:12,997 | INFO     | .. there are 20 such processes running
[2026-01-10 19:04:14] 2026-01-11 00:04:12,997 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 19:04:14] 2026-01-11 00:04:12,997 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 19:04:14] 2026-01-11 00:04:12,997 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 19:04:14] 2026-01-11 00:04:12,997 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 19:04:14] 2026-01-11 00:04:12,997 | INFO     | [monitor] control thread has ended
[2026-01-10 19:04:14] 2026-01-11 00:04:13,095 [wrapper] ==== pilot stdout END ====
[2026-01-10 19:04:14] 2026-01-11 00:04:13,120 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 19:04:14] 2026-01-11 00:04:13,135 [wrapper] pilotpid: 973656
[2026-01-10 19:04:14] 2026-01-11 00:04:13,171 [wrapper] Pilot exit status: 0
[2026-01-10 19:04:14] 2026-01-11 00:04:13,376 [wrapper] pandaids: 6965803439
[2026-01-10 19:04:14] 2026-01-11 00:04:13,664 [wrapper] cleanup supervisor_pilot 1120087 973657
[2026-01-10 19:04:14] 2026-01-11 00:04:13,680 [wrapper] Test setup, not cleaning
[2026-01-10 19:04:14] 2026-01-11 00:04:13,704 [wrapper] apfmon messages muted
[2026-01-10 19:04:14] 2026-01-11 00:04:13,725 [wrapper] ==== wrapper stdout END ====
[2026-01-10 19:04:14] 2026-01-11 00:04:13,748 [wrapper] ==== wrapper stderr END ====
[2026-01-10 19:04:14]  *** Error codes and diagnostics ***
[2026-01-10 19:04:14]     "exeErrorCode": 0,
[2026-01-10 19:04:14]     "exeErrorDiag": "",
[2026-01-10 19:04:14]     "pilotErrorCode": 0,
[2026-01-10 19:04:14]     "pilotErrorDiag": "",
[2026-01-10 19:04:14]  *** Listing of results directory ***
[2026-01-10 19:04:14] total 433828
[2026-01-10 19:04:14] -rw-r--r--. 1 boincer umatlas    597923 Jan  7 08:01 pilot3.tar.gz
[2026-01-10 19:04:14] -rwx------. 1 boincer umatlas     36322 Jan 10 18:04 runpilot2-wrapper.sh
[2026-01-10 19:04:14] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 18:05 queuedata.json
[2026-01-10 19:04:14] -rw-r--r--. 1 boincer umatlas       100 Jan 10 18:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 19:04:14] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 18:09 run_atlas
[2026-01-10 19:04:14] -rw-r--r--. 1 boincer umatlas       105 Jan 10 18:09 job.xml
[2026-01-10 19:04:14] -rw-r--r--. 2 boincer umatlas 393319043 Jan 10 18:09 EVNT.47962006._000127.pool.root.1
[2026-01-10 19:04:14] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 18:09 start_atlas.sh
[2026-01-10 19:04:14] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 18:09 shared
[2026-01-10 19:04:14] -rw-r--r--. 2 boincer umatlas    610726 Jan 10 18:09 input.tar.gz
[2026-01-10 19:04:14] -rw-r--r--. 1 boincer umatlas         0 Jan 10 18:09 boinc_lockfile
[2026-01-10 19:04:14] -rw-r--r--. 1 boincer umatlas      2891 Jan 10 18:09 pandaJob.out
[2026-01-10 19:04:14] -rw-------. 1 boincer umatlas        57 Jan 10 18:09 setup.sh.local
[2026-01-10 19:04:14] -rw-------. 1 boincer umatlas    989548 Jan 10 18:09 agis_schedconf.cvmfs.json
[2026-01-10 19:04:14] -rw-------. 1 boincer umatlas   1516240 Jan 10 18:09 agis_ddmendpoints.agis.ALL.json
[2026-01-10 19:04:14] drwx------. 7 boincer umatlas      4096 Jan 10 18:09 pilot3
[2026-01-10 19:04:14] -rw-r--r--. 1 boincer umatlas       529 Jan 10 18:53 boinc_task_state.xml
[2026-01-10 19:04:14] -rw-r--r--. 1 boincer umatlas      7182 Jan 10 19:02 init_data.xml
[2026-01-10 19:04:14] -rw-------. 1 boincer umatlas  43032108 Jan 10 19:03 HITS.47962010._002891.pool.root.1
[2026-01-10 19:04:14] -rw-------. 1 boincer umatlas      1023 Jan 10 19:03 memory_monitor_summary.json
[2026-01-10 19:04:14] -rw-------. 1 boincer umatlas   1491942 Jan 10 19:03 log.47962010._002891.job.log.tgz.1
[2026-01-10 19:04:14] -rw-------. 1 boincer umatlas      8529 Jan 10 19:03 heartbeat.json
[2026-01-10 19:04:14] -rw-------. 1 boincer umatlas        95 Jan 10 19:03 pilot_heartbeat.json
[2026-01-10 19:04:14] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 19:04 boinc_mmap_file
[2026-01-10 19:04:14] -rw-r--r--. 1 boincer umatlas        26 Jan 10 19:04 wrapper_checkpoint.txt
[2026-01-10 19:04:14] -rw-------. 1 boincer umatlas       822 Jan 10 19:04 pilotlog.txt
[2026-01-10 19:04:14] -rw-------. 1 boincer umatlas    472052 Jan 10 19:04 log.47962010._002891.job.log.1
[2026-01-10 19:04:14] -rw-------. 1 boincer umatlas       353 Jan 10 19:04 output.list
[2026-01-10 19:04:14] -rw-r--r--. 1 boincer umatlas       620 Jan 10 19:04 runtime_log
[2026-01-10 19:04:14] -rw-------. 1 boincer umatlas   1986560 Jan 10 19:04 result.tar.gz
[2026-01-10 19:04:14] -rw-r--r--. 1 boincer umatlas      9344 Jan 10 19:04 runtime_log.err
[2026-01-10 19:04:14] -rw-------. 1 boincer umatlas       652 Jan 10 19:04 DybLDm2Bxy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmvwmKDmtFison.diag
[2026-01-10 19:04:14] -rw-r--r--. 1 boincer umatlas     22471 Jan 10 19:04 stderr.txt
[2026-01-10 19:04:14] HITS file was successfully produced:
[2026-01-10 19:04:14] -rw-------. 1 boincer umatlas 43032108 Jan 10 19:03 shared/HITS.pool.root.1
[2026-01-10 19:04:14]  *** Contents of shared directory: ***
[2026-01-10 19:04:14] total 428692
[2026-01-10 19:04:14] -rw-r--r--. 2 boincer umatlas 393319043 Jan 10 18:09 ATLAS.root_0
[2026-01-10 19:04:14] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 18:09 start_atlas.sh
[2026-01-10 19:04:14] -rw-r--r--. 2 boincer umatlas    610726 Jan 10 18:09 input.tar.gz
[2026-01-10 19:04:14] -rw-------. 1 boincer umatlas  43032108 Jan 10 19:03 HITS.pool.root.1
[2026-01-10 19:04:14] -rw-------. 1 boincer umatlas   1986560 Jan 10 19:04 result.tar.gz
19:04:15 (964627): run_atlas exited; CPU time 8454.594990
19:04:15 (964627): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN