Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:09:46 (913): wrapper (7.7.26015): starting
18:09:46 (913): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 18:09:46] Arguments: --nthreads 12
[2026-01-10 18:09:46] Threads: 12
[2026-01-10 18:09:46] Checking for CVMFS
[2026-01-10 18:09:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 18:09:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 18:09:46] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 18:09:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 18:09:46] 2.11.2.0 2987 353077 96928 154994 0 1 19370434 20275200 1 130560 1 148821421 99.949 21610826 15841 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 18:09:46] CVMFS is ok
[2026-01-10 18:09:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 18:09:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 18:09:46] Further information can be found at the LHC@home message board.
[2026-01-10 18:09:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 18:09:46] Checking for apptainer binary...
[2026-01-10 18:09:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 18:09:46] Running /usr/bin/apptainer --version
[2026-01-10 18:09:46] apptainer version 1.3.2-1.el7
[2026-01-10 18:09:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 18:09:48] c-205-19.aglt2.org
[2026-01-10 18:09:48] apptainer works
[2026-01-10 18:09:48] Set ATHENA_PROC_NUMBER=12
[2026-01-10 18:09:48] Set ATHENA_CORE_NUMBER=12
[2026-01-10 18:09:48] Starting ATLAS job with PandaID=6965803415
[2026-01-10 18:09:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 18:47:12]  *** The last 200 lines of the pilot log: ***
[2026-01-10 18:47:12]  mtime=0
[2026-01-10 18:47:12]  protocol_id=None
[2026-01-10 18:47:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-10 18:47:12]  replicas=None
[2026-01-10 18:47:12]  scope=mc16_13TeV
[2026-01-10 18:47:12]  status=None
[2026-01-10 18:47:12]  status_code=0
[2026-01-10 18:47:12]  storage_token=
[2026-01-10 18:47:12]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6965803415/log.47962010._002867.job.log.tgz.1
[2026-01-10 18:47:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/a6/5b/log.47962010._002867.job.log.tgz.1
[2026-01-10 18:47:12]  workdir=None
[2026-01-10 18:47:12] ]
[2026-01-10 18:47:12] 2026-01-10 23:46:17,673 | INFO     | transferring file log.47962010._002867.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6965803415/log.47962010._002867.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-10 18:47:12] 2026-01-10 23:46:17,673 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6965803415/log.47962010._002867.job.log.tgz.1 /tmp/boinchome/slots/0/log.47962010._002867.job
[2026-01-10 18:47:12] 2026-01-10 23:46:17,705 | INFO     | adding to output.list: log.47962010._002867.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/a6/5b/log.47962010._002867.job.log.tgz.
[2026-01-10 18:47:12] 2026-01-10 23:46:17,706 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 18:47:12] 2026-01-10 23:46:17,706 | INFO     | summary of transferred files:
[2026-01-10 18:47:12] 2026-01-10 23:46:17,706 | INFO     |  -- lfn=log.47962010._002867.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 18:47:12] 2026-01-10 23:46:17,707 | INFO     | stage-out finished correctly
[2026-01-10 18:47:12] 2026-01-10 23:46:18,489 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 18:47:12] 2026-01-10 23:46:18,814 | INFO     | time since job start (2175s) is within the limit (349056.0s)
[2026-01-10 18:47:12] 2026-01-10 23:46:19,071 | INFO     | monitor loop #171: job 0:6965803415 is in state 'finished'
[2026-01-10 18:47:12] 2026-01-10 23:46:19,071 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 18:47:12] 2026-01-10 23:46:19,084 | INFO     | job 6965803415 has state=finished
[2026-01-10 18:47:12] 2026-01-10 23:46:19,084 | INFO     | preparing for final server update for job 6965803415 in state='finished'
[2026-01-10 18:47:12] 2026-01-10 23:46:19,084 | INFO     | this job has now completed (state=finished)
[2026-01-10 18:47:12] 2026-01-10 23:46:19,085 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 18:47:12] 2026-01-10 23:46:19,085 | INFO     | log transfer has been attempted: DONE
[2026-01-10 18:47:12] 2026-01-10 23:46:19,085 | INFO     | job 6965803415 has finished - writing final server update
[2026-01-10 18:47:12] 2026-01-10 23:46:19,085 | INFO     | total number of processed events: 50 (read)
[2026-01-10 18:47:12] 2026-01-10 23:46:19,086 | INFO     | executing command: lscpu
[2026-01-10 18:47:12] 2026-01-10 23:46:19,111 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 18:47:12] 2026-01-10 23:46:20,819 | INFO     | time since job start (2177s) is within the limit (349056.0s)
[2026-01-10 18:47:12] 2026-01-10 23:46:21,574 | INFO     | monitor loop #172: job 0:6965803415 is in state 'finished'
[2026-01-10 18:47:12] 2026-01-10 23:46:21,574 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 18:47:12] 2026-01-10 23:46:21,933 | INFO     | PID=4777 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-10 18:47:12] 2026-01-10 23:46:22,934 | INFO     | time since job start (2179s) is within the limit (349056.0s)
[2026-01-10 18:47:12] 2026-01-10 23:46:24,084 | INFO     | monitor loop #173: job 0:6965803415 is in state 'finished'
[2026-01-10 18:47:12] 2026-01-10 23:46:24,084 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 18:47:12] 2026-01-10 23:46:24,820 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-10 18:47:12] 2026-01-10 23:46:24,824 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2026-01-10 18:47:12] 2026-01-10 23:46:24,826 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6965803415/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 18:47:12] 2026-01-10 23:46:24,828 | INFO     | extracted standard info from prmon json
[2026-01-10 18:47:12] 2026-01-10 23:46:24,828 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 18:47:12] 2026-01-10 23:46:24,828 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 18:47:12] 2026-01-10 23:46:24,829 | INFO     | fitting pss+swap vs Time
[2026-01-10 18:47:12] 2026-01-10 23:46:24,830 | INFO     | sum of square deviations: 7551682.137931036
[2026-01-10 18:47:12] 2026-01-10 23:46:24,830 | INFO     | sum of deviations: -2258268974.6896553
[2026-01-10 18:47:12] 2026-01-10 23:46:24,830 | INFO     | mean x: 1768087793.1724138
[2026-01-10 18:47:12] 2026-01-10 23:46:24,830 | INFO     | mean y: 2821909.1379310344
[2026-01-10 18:47:12] 2026-01-10 23:46:24,830 | INFO     | intersect: 528735061285.7665
[2026-01-10 18:47:12] 2026-01-10 23:46:24,830 | INFO     | chi2: 0.4047474981349657
[2026-01-10 18:47:12] 2026-01-10 23:46:24,831 | INFO     | current memory leak: -299.04 B/s (using 29 data points, chi2=0.40)
[2026-01-10 18:47:12] 2026-01-10 23:46:24,831 | INFO     | could have reported an average CPU frequency of 1824 MHz (5 samples)
[2026-01-10 18:47:12] 2026-01-10 23:46:24,831 | INFO     | ..............................
[2026-01-10 18:47:12] 2026-01-10 23:46:24,831 | INFO     | . Timing measurements:
[2026-01-10 18:47:12] 2026-01-10 23:46:24,831 | INFO     | . get job = 0 s
[2026-01-10 18:47:12] 2026-01-10 23:46:24,831 | INFO     | . initial setup = 2 s
[2026-01-10 18:47:12] 2026-01-10 23:46:24,831 | INFO     | . payload setup = 8 s
[2026-01-10 18:47:12] 2026-01-10 23:46:24,831 | INFO     | . stage-in = 0 s
[2026-01-10 18:47:12] 2026-01-10 23:46:24,832 | INFO     | . payload execution = 2145 s
[2026-01-10 18:47:12] 2026-01-10 23:46:24,832 | INFO     | . stage-out = 0 s
[2026-01-10 18:47:12] 2026-01-10 23:46:24,832 | INFO     | . log creation = 0 s
[2026-01-10 18:47:12] 2026-01-10 23:46:24,832 | INFO     | ..............................
[2026-01-10 18:47:12] 2026-01-10 23:46:24,940 | INFO     | time since job start (2181s) is within the limit (349056.0s)
[2026-01-10 18:47:12] 2026-01-10 23:46:25,082 | INFO     | 
[2026-01-10 18:47:12] 2026-01-10 23:46:25,083 | INFO     | job summary report
[2026-01-10 18:47:12] 2026-01-10 23:46:25,083 | INFO     | --------------------------------------------------
[2026-01-10 18:47:12] 2026-01-10 23:46:25,083 | INFO     | PanDA job id: 6965803415
[2026-01-10 18:47:12] 2026-01-10 23:46:25,083 | INFO     | task id: 47962010
[2026-01-10 18:47:12] 2026-01-10 23:46:25,083 | INFO     | errors: (none)
[2026-01-10 18:47:12] 2026-01-10 23:46:25,083 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 18:47:12] 2026-01-10 23:46:25,084 | INFO     | pilot state: finished 
[2026-01-10 18:47:12] 2026-01-10 23:46:25,084 | INFO     | transexitcode: 0
[2026-01-10 18:47:12] 2026-01-10 23:46:25,084 | INFO     | exeerrorcode: 0
[2026-01-10 18:47:12] 2026-01-10 23:46:25,084 | INFO     | exeerrordiag: 
[2026-01-10 18:47:12] 2026-01-10 23:46:25,084 | INFO     | exitcode: 0
[2026-01-10 18:47:12] 2026-01-10 23:46:25,085 | INFO     | exitmsg: OK
[2026-01-10 18:47:12] 2026-01-10 23:46:25,085 | INFO     | cpuconsumptiontime: 19582 s
[2026-01-10 18:47:12] 2026-01-10 23:46:25,085 | INFO     | nevents: 50
[2026-01-10 18:47:12] 2026-01-10 23:46:25,085 | INFO     | neventsw: 0
[2026-01-10 18:47:12] 2026-01-10 23:46:25,085 | INFO     | pid: 11266
[2026-01-10 18:47:12] 2026-01-10 23:46:25,085 | INFO     | pgrp: 11266
[2026-01-10 18:47:12] 2026-01-10 23:46:25,085 | INFO     | corecount: 12
[2026-01-10 18:47:12] 2026-01-10 23:46:25,086 | INFO     | event service: False
[2026-01-10 18:47:12] 2026-01-10 23:46:25,086 | INFO     | sizes: {0: 2284400, 1: 2284599, 6: 2284861, 11: 2284889, 2157: 2310756, 2158: 2319750, 2159: 2319934, 2165: 2320212}
[2026-01-10 18:47:12] 2026-01-10 23:46:25,086 | INFO     | --------------------------------------------------
[2026-01-10 18:47:12] 2026-01-10 23:46:25,086 | INFO     | 
[2026-01-10 18:47:12] 2026-01-10 23:46:25,086 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-10 18:47:12] 2026-01-10 23:46:25,109 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 18:47:12] 2026-01-10 23:46:25,109 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 18:47:12] 2026-01-10 23:46:25,109 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 18:47:12] 2026-01-10 23:46:25,109 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 18:47:12] 2026-01-10 23:46:25,110 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 18:47:12] 2026-01-10 23:46:25,110 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 18:47:12] 2026-01-10 23:46:25,110 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 18:47:12] 2026-01-10 23:46:25,110 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 18:47:12] 2026-01-10 23:46:25,110 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 18:47:12] 2026-01-10 23:46:25,110 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 18:47:12] 2026-01-10 23:46:25,111 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 18:47:12] 2026-01-10 23:46:25,111 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 18:47:12] 2026-01-10 23:46:25,111 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 18:47:12] 2026-01-10 23:46:25,111 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 18:47:12] 2026-01-10 23:46:25,111 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 18:47:12] 2026-01-10 23:46:25,112 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 18:47:12] 2026-01-10 23:46:25,112 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 18:47:12] 2026-01-10 23:46:25,112 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 18:47:12] 2026-01-10 23:46:25,112 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 18:47:12] 2026-01-10 23:46:25,112 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 18:47:12] 2026-01-10 23:46:25,112 | INFO     | job 6965803415 has completed (purged errors)
[2026-01-10 18:47:12] 2026-01-10 23:46:25,113 | INFO     | overall cleanup function is called
[2026-01-10 18:47:12] 2026-01-10 23:46:26,128 | INFO     | --- collectZombieJob: --- 10, [11266]
[2026-01-10 18:47:12] 2026-01-10 23:46:26,128 | INFO     | zombie collector waiting for pid 11266
[2026-01-10 18:47:12] 2026-01-10 23:46:26,128 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 18:47:12] 2026-01-10 23:46:26,128 | INFO     | collected zombie processes
[2026-01-10 18:47:12] 2026-01-10 23:46:26,129 | INFO     | will attempt to kill all subprocesses of pid=11266
[2026-01-10 18:47:12] 2026-01-10 23:46:26,220 | INFO     | process IDs to be killed: [11266] (in reverse order)
[2026-01-10 18:47:12] 2026-01-10 23:46:26,268 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 18:47:12] 2026-01-10 23:46:26,268 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 18:47:12] 2026-01-10 23:46:26,272 | INFO     | did not find any defunct processes belonging to 11266
[2026-01-10 18:47:12] 2026-01-10 23:46:26,275 | INFO     | did not find any defunct processes belonging to 11266
[2026-01-10 18:47:12] 2026-01-10 23:46:26,276 | INFO     | ready for new job
[2026-01-10 18:47:12] 2026-01-10 23:46:26,276 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 18:47:12] 2026-01-10 23:46:26,277 | INFO     | ***************************************
[2026-01-10 18:47:12] 2026-01-10 23:46:26,277 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 18:47:12] 2026-01-10 23:46:26,277 | INFO     | ***************************************
[2026-01-10 18:47:12] 2026-01-10 23:46:26,277 | INFO     | 
[2026-01-10 18:47:12] 2026-01-10 23:46:26,278 | INFO     | architecture information:
[2026-01-10 18:47:12] 2026-01-10 23:46:26,279 | INFO     | executing command: cat /etc/os-release
[2026-01-10 18:47:12] 2026-01-10 23:46:26,292 | INFO     | cat /etc/os-release:
[2026-01-10 18:47:12] NAME="CentOS Linux"
[2026-01-10 18:47:12] VERSION="7 (Core)"
[2026-01-10 18:47:12] ID="centos"
[2026-01-10 18:47:12] ID_LIKE="rhel fedora"
[2026-01-10 18:47:12] VERSION_ID="7"
[2026-01-10 18:47:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 18:47:12] ANSI_COLOR="0;31"
[2026-01-10 18:47:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 18:47:12] HOME_URL="https://www.centos.org/"
[2026-01-10 18:47:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 18:47:12] 
[2026-01-10 18:47:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 18:47:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 18:47:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 18:47:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 18:47:12] 
[2026-01-10 18:47:12] 2026-01-10 23:46:26,293 | INFO     | ***************************************
[2026-01-10 18:47:12] 2026-01-10 23:46:26,794 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-10 18:47:12] 2026-01-10 23:46:26,810 | INFO     | sufficient remaining disk space (29149364224 B)
[2026-01-10 18:47:12] 2026-01-10 23:46:26,811 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 18:47:12] 2026-01-10 23:46:26,811 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 18:47:12] 2026-01-10 23:46:26,811 | INFO     | update_server=False
[2026-01-10 18:47:12] 2026-01-10 23:46:26,811 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 18:47:12] 2026-01-10 23:46:26,811 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-10 18:47:12] 2026-01-10 23:46:26,812 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 18:47:12] 2026-01-10 23:46:26,812 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 18:47:12] 2026-01-10 23:46:26,812 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 18:47:12] 2026-01-10 23:46:26,812 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 18:47:12] 2026-01-10 23:46:27,228 | INFO     | all job control threads have been joined
[2026-01-10 18:47:12] 2026-01-10 23:46:27,230 | INFO     | all data control threads have been joined
[2026-01-10 18:47:12] 2026-01-10 23:46:27,335 | INFO     | all payload control threads have been joined
[2026-01-10 18:47:12] 2026-01-10 23:46:27,592 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 18:47:12] 2026-01-10 23:46:27,593 | INFO     | aborting loop
[2026-01-10 18:47:12] 2026-01-10 23:46:27,817 | INFO     | [job] retrieve thread has finished
[2026-01-10 18:47:12] 2026-01-10 23:46:27,818 | INFO     | [job] queue monitor thread has finished
[2026-01-10 18:47:12] 2026-01-10 23:46:28,114 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 18:47:12] 2026-01-10 23:46:28,136 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 18:47:12] 2026-01-10 23:46:28,233 | INFO     | [job] control thread has finished
[2026-01-10 18:47:12] 2026-01-10 23:46:28,236 | INFO     | [data] control thread has finished
[2026-01-10 18:47:12] 2026-01-10 23:46:28,300 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 18:47:12] 2026-01-10 23:46:28,300 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 18:47:12] 2026-01-10 23:46:28,341 | INFO     | [payload] control thread has finished
[2026-01-10 18:47:12] 2026-01-10 23:46:28,598 | INFO     | [job] job monitor thread has finished
[2026-01-10 18:47:12] 2026-01-10 23:46:28,790 | INFO     | [data] copytool_in thread has finished
[2026-01-10 18:47:12] 2026-01-10 23:46:29,077 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 18:47:12] 2026-01-10 23:46:29,091 | INFO     | [payload] validate_post thread has finished
[2026-01-10 18:47:12] 2026-01-10 23:46:29,146 | INFO     | [job] validate thread has finished
[2026-01-10 18:47:12] 2026-01-10 23:46:29,306 | INFO     | [payload] failed_post thread has finished
[2026-01-10 18:47:12] 2026-01-10 23:46:30,306 | INFO     | [data] copytool_out thread has finished
[2026-01-10 18:47:12] 2026-01-10 23:46:33,083 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 18:47:12] 2026-01-10 23:46:37,510 | INFO     | job.realtimelogging is not enabled
[2026-01-10 18:47:12] 2026-01-10 23:46:38,516 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 18:47:12] 2026-01-10 23:47:06,706 | INFO     | [monitor] cgroup control has ended
[2026-01-10 18:47:12] 2026-01-10 23:47:06,793 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140608746342208)>', '<ExcThread(monitor, started 140607984998144)>']
[2026-01-10 18:47:12] 2026-01-10 23:47:07,011 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 18:47:12] 2026-01-10 23:47:07,011 | INFO     | [monitor] control thread has ended
[2026-01-10 18:47:12] 2026-01-10 23:47:11,818 | INFO     | all workflow threads have been joined
[2026-01-10 18:47:12] 2026-01-10 23:47:11,819 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 18:47:12] 2026-01-10 23:47:11,819 | INFO     | traces error code: 0
[2026-01-10 18:47:12] 2026-01-10 23:47:11,819 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 18:47:12] 2026-01-10 23:47:11,922 [wrapper] ==== pilot stdout END ====
[2026-01-10 18:47:12] 2026-01-10 23:47:11,926 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 18:47:12] 2026-01-10 23:47:11,930 [wrapper] pilotpid: 4777
[2026-01-10 18:47:12] 2026-01-10 23:47:11,934 [wrapper] Pilot exit status: 0
[2026-01-10 18:47:12] 2026-01-10 23:47:11,948 [wrapper] pandaids: 6965803415
[2026-01-10 18:47:12] 2026-01-10 23:47:11,997 [wrapper] cleanup supervisor_pilot 24963 4778
[2026-01-10 18:47:12] 2026-01-10 23:47:12,001 [wrapper] Test setup, not cleaning
[2026-01-10 18:47:12] 2026-01-10 23:47:12,004 [wrapper] apfmon messages muted
[2026-01-10 18:47:12] 2026-01-10 23:47:12,008 [wrapper] ==== wrapper stdout END ====
[2026-01-10 18:47:12] 2026-01-10 23:47:12,012 [wrapper] ==== wrapper stderr END ====
[2026-01-10 18:47:12]  *** Error codes and diagnostics ***
[2026-01-10 18:47:12]     "exeErrorCode": 0,
[2026-01-10 18:47:12]     "exeErrorDiag": "",
[2026-01-10 18:47:12]     "pilotErrorCode": 0,
[2026-01-10 18:47:12]     "pilotErrorDiag": "",
[2026-01-10 18:47:12]  *** Listing of results directory ***
[2026-01-10 18:47:12] total 437928
[2026-01-10 18:47:12] -rw-r--r-- 1 boincer umatlas    579449 Jan 10 18:00 pilot3.tar.gz
[2026-01-10 18:47:12] -rwx------ 1 boincer umatlas     36322 Jan 10 18:04 runpilot2-wrapper.sh
[2026-01-10 18:47:12] -rw-r--r-- 1 boincer umatlas      5112 Jan 10 18:05 queuedata.json
[2026-01-10 18:47:12] -rw-r--r-- 1 boincer umatlas       100 Jan 10 18:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 18:47:12] -rwxr-xr-x 1 boincer umatlas      7986 Jan 10 18:09 run_atlas
[2026-01-10 18:47:12] -rw-r--r-- 1 boincer umatlas       105 Jan 10 18:09 job.xml
[2026-01-10 18:47:12] -rw-r--r-- 2 boincer umatlas 392167382 Jan 10 18:09 EVNT.47962006._000121.pool.root.1
[2026-01-10 18:47:12] -rw-r--r-- 2 boincer umatlas     15847 Jan 10 18:09 start_atlas.sh
[2026-01-10 18:47:12] drwxrwx--x 2 boincer umatlas      4096 Jan 10 18:09 shared
[2026-01-10 18:47:12] -rw-r--r-- 2 boincer umatlas    592610 Jan 10 18:09 input.tar.gz
[2026-01-10 18:47:12] -rw-r--r-- 1 boincer umatlas         0 Jan 10 18:09 boinc_lockfile
[2026-01-10 18:47:12] -rw-r--r-- 1 boincer umatlas      2891 Jan 10 18:09 pandaJob.out
[2026-01-10 18:47:12] -rw------- 1 boincer umatlas        57 Jan 10 18:09 setup.sh.local
[2026-01-10 18:47:12] -rw------- 1 boincer umatlas    989548 Jan 10 18:10 agis_schedconf.cvmfs.json
[2026-01-10 18:47:12] -rw------- 1 boincer umatlas   1516240 Jan 10 18:10 agis_ddmendpoints.agis.ALL.json
[2026-01-10 18:47:12] drwx------ 5 boincer umatlas      4096 Jan 10 18:10 pilot3
[2026-01-10 18:47:12] -rw-r--r-- 1 boincer umatlas       530 Jan 10 18:37 boinc_task_state.xml
[2026-01-10 18:47:12] -rw-r--r-- 1 boincer umatlas      5952 Jan 10 18:38 init_data.xml
[2026-01-10 18:47:12] -rw------- 1 boincer umatlas  48426359 Jan 10 18:46 HITS.47962010._002867.pool.root.1
[2026-01-10 18:47:12] -rw------- 1 boincer umatlas      1051 Jan 10 18:46 memory_monitor_summary.json
[2026-01-10 18:47:12] -rw------- 1 boincer umatlas   1608408 Jan 10 18:46 log.47962010._002867.job.log.tgz.1
[2026-01-10 18:47:12] -rw------- 1 boincer umatlas        95 Jan 10 18:46 pilot_heartbeat.json
[2026-01-10 18:47:12] -rw------- 1 boincer umatlas      8615 Jan 10 18:46 heartbeat.json
[2026-01-10 18:47:12] -rw-r--r-- 1 boincer umatlas        27 Jan 10 18:47 wrapper_checkpoint.txt
[2026-01-10 18:47:12] -rw-r--r-- 1 boincer umatlas      8192 Jan 10 18:47 boinc_mmap_file
[2026-01-10 18:47:12] -rw------- 1 boincer umatlas      4624 Jan 10 18:47 pilotlog.txt
[2026-01-10 18:47:12] -rw------- 1 boincer umatlas    355392 Jan 10 18:47 log.47962010._002867.job.log.1
[2026-01-10 18:47:12] -rw------- 1 boincer umatlas       353 Jan 10 18:47 output.list
[2026-01-10 18:47:12] -rw-r--r-- 1 boincer umatlas       620 Jan 10 18:47 runtime_log
[2026-01-10 18:47:12] -rw------- 1 boincer umatlas   1986560 Jan 10 18:47 result.tar.gz
[2026-01-10 18:47:12] -rw-r--r-- 1 boincer umatlas      9344 Jan 10 18:47 runtime_log.err
[2026-01-10 18:47:12] -rw------- 1 boincer umatlas       659 Jan 10 18:47 2kKLDm2Bxy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmowmKDm2tsjtn.diag
[2026-01-10 18:47:12] -rw-r--r-- 1 boincer umatlas     21815 Jan 10 18:47 stderr.txt
[2026-01-10 18:47:12] HITS file was successfully produced:
[2026-01-10 18:47:12] -rw------- 1 boincer umatlas 48426359 Jan 10 18:46 shared/HITS.pool.root.1
[2026-01-10 18:47:12]  *** Contents of shared directory: ***
[2026-01-10 18:47:12] total 432808
[2026-01-10 18:47:12] -rw-r--r-- 2 boincer umatlas 392167382 Jan 10 18:09 ATLAS.root_0
[2026-01-10 18:47:12] -rw-r--r-- 2 boincer umatlas     15847 Jan 10 18:09 start_atlas.sh
[2026-01-10 18:47:12] -rw-r--r-- 2 boincer umatlas    592610 Jan 10 18:09 input.tar.gz
[2026-01-10 18:47:12] -rw------- 1 boincer umatlas  48426359 Jan 10 18:46 HITS.pool.root.1
[2026-01-10 18:47:12] -rw------- 1 boincer umatlas   1986560 Jan 10 18:47 result.tar.gz
18:47:13 (913): run_atlas exited; CPU time 19188.319646
18:47:13 (913): called boinc_finish(0)

</stderr_txt>
]]>

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