Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:09:49 (4973): wrapper (7.7.26015): starting
18:09:49 (4973): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 18:09:49] Arguments: --nthreads 8
[2026-01-10 18:09:49] Threads: 8
[2026-01-10 18:09:49] Checking for CVMFS
[2026-01-10 18:09:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 18:09:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 18:09:49] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 18:09:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 18:09:49] 2.11.2.0 2866 138740 114976 154994 0 1 11626996 20275201 1 130560 0 37851335 99.815 9648019 24970 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 18:09:49] CVMFS is ok
[2026-01-10 18:09:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 18:09:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 18:09:49] Further information can be found at the LHC@home message board.
[2026-01-10 18:09:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 18:09:49] Checking for apptainer binary...
[2026-01-10 18:09:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 18:09:49] Running /usr/bin/apptainer --version
[2026-01-10 18:09:49] apptainer version 1.3.2-1.el7
[2026-01-10 18:09:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 18:09:51] c-204-35.aglt2.org
[2026-01-10 18:09:51] apptainer works
[2026-01-10 18:09:51] Set ATHENA_PROC_NUMBER=8
[2026-01-10 18:09:51] Set ATHENA_CORE_NUMBER=8
[2026-01-10 18:09:51] Starting ATLAS job with PandaID=6965803331
[2026-01-10 18:09:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 19:08:25]  *** The last 200 lines of the pilot log: ***
[2026-01-10 19:08:25] 2026-01-11 00:07:42,915 | INFO     | summary of transferred files:
[2026-01-10 19:08:25] 2026-01-11 00:07:42,916 | INFO     |  -- lfn=log.47962010._002783.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 19:08:25] 2026-01-11 00:07:42,916 | INFO     | stage-out finished correctly
[2026-01-10 19:08:25] 2026-01-11 00:07:43,506 | INFO     | time since job start (3453s) is within the limit (349056.0s)
[2026-01-10 19:08:25] 2026-01-11 00:07:44,630 | INFO     | PID=8836 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-10 19:08:25] 2026-01-11 00:07:45,630 | INFO     | time since job start (3455s) is within the limit (349056.0s)
[2026-01-10 19:08:25] 2026-01-11 00:07:45,726 | WARNING  | process 15218 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 19:08:25] 2026-01-11 00:07:45,727 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6965803331/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 19:08:25] 2026-01-11 00:07:45,728 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6965803331/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 19:08:25] 2026-01-11 00:07:45,728 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-10 19:08:25] 2026-01-11 00:07:45,728 | WARNING  | maxPSS not found in memory monitor output
[2026-01-10 19:08:25] 2026-01-11 00:07:45,729 | INFO     | payload log (log.HITSMergeAthenaMP0) within allowed size limit (2147483648 B): 161974 B
[2026-01-10 19:08:25] 2026-01-11 00:07:45,729 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3204182 B
[2026-01-10 19:08:25] 2026-01-11 00:07:45,729 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 13297 B
[2026-01-10 19:08:25] 2026-01-11 00:07:45,729 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-10 19:08:25] 2026-01-11 00:07:45,748 | INFO     | sufficient remaining disk space (18327011328 B)
[2026-01-10 19:08:25] 2026-01-11 00:07:45,749 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-10 19:08:25] 2026-01-11 00:07:45,754 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6965803331: 6696922 B (within 4404019200 B limit)
[2026-01-10 19:08:25] 2026-01-11 00:07:45,754 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6965803331/HITS.47962010._002783.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-10 19:08:25] 2026-01-11 00:07:45,755 | INFO     | total size of present files: 0 B (workdir size: 6696922 B)
[2026-01-10 19:08:25] 2026-01-11 00:07:45,755 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6965803331/HITS.47962010._002783.pool.root.1 since it does not exist
[2026-01-10 19:08:25] 2026-01-11 00:07:45,845 | INFO     | number of running child processes to parent process 15218: 1
[2026-01-10 19:08:25] 2026-01-11 00:07:45,845 | INFO     | maximum number of monitored processes: 16
[2026-01-10 19:08:25] 2026-01-11 00:07:46,152 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 19:08:25] 2026-01-11 00:07:46,243 | INFO     | job 6965803331 has state=finished
[2026-01-10 19:08:25] 2026-01-11 00:07:46,244 | INFO     | preparing for final server update for job 6965803331 in state='finished'
[2026-01-10 19:08:25] 2026-01-11 00:07:46,244 | INFO     | this job has now completed (state=finished)
[2026-01-10 19:08:25] 2026-01-11 00:07:46,245 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 19:08:25] 2026-01-11 00:07:46,245 | INFO     | log transfer has been attempted: DONE
[2026-01-10 19:08:25] 2026-01-11 00:07:46,245 | INFO     | job 6965803331 has finished - writing final server update
[2026-01-10 19:08:25] 2026-01-11 00:07:46,246 | INFO     | total number of processed events: 50 (read)
[2026-01-10 19:08:25] 2026-01-11 00:07:46,247 | INFO     | executing command: lscpu
[2026-01-10 19:08:25] 2026-01-11 00:07:46,275 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 19:08:25] 2026-01-11 00:07:47,636 | INFO     | time since job start (3457s) is within the limit (349056.0s)
[2026-01-10 19:08:25] 2026-01-11 00:07:48,349 | INFO     | monitor loop #263: job 0:6965803331 is in state 'finished'
[2026-01-10 19:08:25] 2026-01-11 00:07:48,349 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 19:08:25] 2026-01-11 00:07:49,641 | INFO     | time since job start (3459s) is within the limit (349056.0s)
[2026-01-10 19:08:25] 2026-01-11 00:07:50,852 | INFO     | monitor loop #264: job 0:6965803331 is in state 'finished'
[2026-01-10 19:08:25] 2026-01-11 00:07:50,853 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 19:08:25] 2026-01-11 00:07:51,647 | INFO     | time since job start (3461s) is within the limit (349056.0s)
[2026-01-10 19:08:25] 2026-01-11 00:07:52,086 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-10 19:08:25] 2026-01-11 00:07:52,090 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2026-01-10 19:08:25] 2026-01-11 00:07:52,092 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6965803331/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 19:08:25] 2026-01-11 00:07:52,093 | INFO     | extracted standard info from prmon json
[2026-01-10 19:08:25] 2026-01-11 00:07:52,093 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 19:08:25] 2026-01-11 00:07:52,093 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 19:08:25] 2026-01-11 00:07:52,095 | INFO     | fitting pss+swap vs Time
[2026-01-10 19:08:25] 2026-01-11 00:07:52,095 | INFO     | sum of square deviations: 36455441.99999996
[2026-01-10 19:08:25] 2026-01-11 00:07:52,095 | INFO     | sum of deviations: -2557510078.1428576
[2026-01-10 19:08:25] 2026-01-11 00:07:52,105 | INFO     | mean x: 1768088412.4285715
[2026-01-10 19:08:25] 2026-01-11 00:07:52,106 | INFO     | mean y: 2500724.9591836734
[2026-01-10 19:08:25] 2026-01-11 00:07:52,106 | INFO     | intersect: 124041702713.88805
[2026-01-10 19:08:25] 2026-01-11 00:07:52,106 | INFO     | chi2: 0.3975215462137695
[2026-01-10 19:08:25] 2026-01-11 00:07:52,106 | INFO     | current memory leak: -70.15 B/s (using 49 data points, chi2=0.40)
[2026-01-10 19:08:25] 2026-01-11 00:07:52,106 | INFO     | could have reported an average CPU frequency of 1819 MHz (5 samples)
[2026-01-10 19:08:25] 2026-01-11 00:07:52,107 | INFO     | ..............................
[2026-01-10 19:08:25] 2026-01-11 00:07:52,107 | INFO     | . Timing measurements:
[2026-01-10 19:08:25] 2026-01-11 00:07:52,107 | INFO     | . get job = 0 s
[2026-01-10 19:08:25] 2026-01-11 00:07:52,107 | INFO     | . initial setup = 2 s
[2026-01-10 19:08:25] 2026-01-11 00:07:52,107 | INFO     | . payload setup = 9 s
[2026-01-10 19:08:25] 2026-01-11 00:07:52,107 | INFO     | . stage-in = 0 s
[2026-01-10 19:08:25] 2026-01-11 00:07:52,107 | INFO     | . payload execution = 3421 s
[2026-01-10 19:08:25] 2026-01-11 00:07:52,107 | INFO     | . stage-out = 0 s
[2026-01-10 19:08:25] 2026-01-11 00:07:52,107 | INFO     | . log creation = 0 s
[2026-01-10 19:08:25] 2026-01-11 00:07:52,108 | INFO     | ..............................
[2026-01-10 19:08:25] 2026-01-11 00:07:52,196 | INFO     | 
[2026-01-10 19:08:25] 2026-01-11 00:07:52,196 | INFO     | job summary report
[2026-01-10 19:08:25] 2026-01-11 00:07:52,196 | INFO     | --------------------------------------------------
[2026-01-10 19:08:25] 2026-01-11 00:07:52,197 | INFO     | PanDA job id: 6965803331
[2026-01-10 19:08:25] 2026-01-11 00:07:52,197 | INFO     | task id: 47962010
[2026-01-10 19:08:25] 2026-01-11 00:07:52,197 | INFO     | errors: (none)
[2026-01-10 19:08:25] 2026-01-11 00:07:52,197 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 19:08:25] 2026-01-11 00:07:52,197 | INFO     | pilot state: finished 
[2026-01-10 19:08:25] 2026-01-11 00:07:52,197 | INFO     | transexitcode: 0
[2026-01-10 19:08:25] 2026-01-11 00:07:52,198 | INFO     | exeerrorcode: 0
[2026-01-10 19:08:25] 2026-01-11 00:07:52,198 | INFO     | exeerrordiag: 
[2026-01-10 19:08:25] 2026-01-11 00:07:52,198 | INFO     | exitcode: 0
[2026-01-10 19:08:25] 2026-01-11 00:07:52,198 | INFO     | exitmsg: OK
[2026-01-10 19:08:25] 2026-01-11 00:07:52,198 | INFO     | cpuconsumptiontime: 22246 s
[2026-01-10 19:08:25] 2026-01-11 00:07:52,198 | INFO     | nevents: 50
[2026-01-10 19:08:25] 2026-01-11 00:07:52,199 | INFO     | neventsw: 0
[2026-01-10 19:08:25] 2026-01-11 00:07:52,199 | INFO     | pid: 15218
[2026-01-10 19:08:25] 2026-01-11 00:07:52,199 | INFO     | pgrp: 15218
[2026-01-10 19:08:25] 2026-01-11 00:07:52,199 | INFO     | corecount: 8
[2026-01-10 19:08:25] 2026-01-11 00:07:52,199 | INFO     | event service: False
[2026-01-10 19:08:25] 2026-01-11 00:07:52,200 | INFO     | sizes: {0: 2284569, 6: 2284831, 11: 2284859, 3434: 2311275, 3435: 2320269, 3438: 2320353, 3444: 2320759}
[2026-01-10 19:08:25] 2026-01-11 00:07:52,200 | INFO     | --------------------------------------------------
[2026-01-10 19:08:25] 2026-01-11 00:07:52,200 | INFO     | 
[2026-01-10 19:08:25] 2026-01-11 00:07:52,200 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-10 19:08:25] 2026-01-11 00:07:52,229 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 19:08:25] 2026-01-11 00:07:52,229 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 19:08:25] 2026-01-11 00:07:52,229 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 19:08:25] 2026-01-11 00:07:52,230 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 19:08:25] 2026-01-11 00:07:52,230 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 19:08:25] 2026-01-11 00:07:52,230 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 19:08:25] 2026-01-11 00:07:52,230 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 19:08:25] 2026-01-11 00:07:52,230 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 19:08:25] 2026-01-11 00:07:52,231 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 19:08:25] 2026-01-11 00:07:52,231 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 19:08:25] 2026-01-11 00:07:52,231 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 19:08:25] 2026-01-11 00:07:52,231 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 19:08:25] 2026-01-11 00:07:52,231 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 19:08:25] 2026-01-11 00:07:52,232 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 19:08:25] 2026-01-11 00:07:52,232 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 19:08:25] 2026-01-11 00:07:52,232 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 19:08:25] 2026-01-11 00:07:52,232 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 19:08:25] 2026-01-11 00:07:52,232 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 19:08:25] 2026-01-11 00:07:52,232 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 19:08:25] 2026-01-11 00:07:52,233 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 19:08:25] 2026-01-11 00:07:52,233 | INFO     | job 6965803331 has completed (purged errors)
[2026-01-10 19:08:25] 2026-01-11 00:07:52,233 | INFO     | overall cleanup function is called
[2026-01-10 19:08:25] 2026-01-11 00:07:53,245 | INFO     | --- collectZombieJob: --- 10, [15218]
[2026-01-10 19:08:25] 2026-01-11 00:07:53,245 | INFO     | zombie collector waiting for pid 15218
[2026-01-10 19:08:25] 2026-01-11 00:07:53,246 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 19:08:25] 2026-01-11 00:07:53,246 | INFO     | collected zombie processes
[2026-01-10 19:08:25] 2026-01-11 00:07:53,246 | INFO     | will attempt to kill all subprocesses of pid=15218
[2026-01-10 19:08:25] 2026-01-11 00:07:53,338 | INFO     | process IDs to be killed: [15218] (in reverse order)
[2026-01-10 19:08:25] 2026-01-11 00:07:53,396 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 19:08:25] 2026-01-11 00:07:53,397 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 19:08:25] 2026-01-11 00:07:53,401 | INFO     | did not find any defunct processes belonging to 15218
[2026-01-10 19:08:25] 2026-01-11 00:07:53,404 | INFO     | did not find any defunct processes belonging to 15218
[2026-01-10 19:08:25] 2026-01-11 00:07:53,404 | INFO     | ready for new job
[2026-01-10 19:08:25] 2026-01-11 00:07:53,405 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 19:08:25] 2026-01-11 00:07:53,406 | INFO     | ***************************************
[2026-01-10 19:08:25] 2026-01-11 00:07:53,406 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 19:08:25] 2026-01-11 00:07:53,406 | INFO     | ***************************************
[2026-01-10 19:08:25] 2026-01-11 00:07:53,406 | INFO     | 
[2026-01-10 19:08:25] 2026-01-11 00:07:53,407 | INFO     | architecture information:
[2026-01-10 19:08:25] 2026-01-11 00:07:53,408 | INFO     | executing command: cat /etc/os-release
[2026-01-10 19:08:25] 2026-01-11 00:07:53,427 | INFO     | cat /etc/os-release:
[2026-01-10 19:08:25] NAME="CentOS Linux"
[2026-01-10 19:08:25] VERSION="7 (Core)"
[2026-01-10 19:08:25] ID="centos"
[2026-01-10 19:08:25] ID_LIKE="rhel fedora"
[2026-01-10 19:08:25] VERSION_ID="7"
[2026-01-10 19:08:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 19:08:25] ANSI_COLOR="0;31"
[2026-01-10 19:08:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 19:08:25] HOME_URL="https://www.centos.org/"
[2026-01-10 19:08:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 19:08:25] 
[2026-01-10 19:08:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 19:08:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 19:08:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 19:08:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 19:08:25] 
[2026-01-10 19:08:25] 2026-01-11 00:07:53,427 | INFO     | ***************************************
[2026-01-10 19:08:25] 2026-01-11 00:07:53,929 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-10 19:08:25] 2026-01-11 00:07:53,949 | INFO     | sufficient remaining disk space (18334351360 B)
[2026-01-10 19:08:25] 2026-01-11 00:07:53,950 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 19:08:25] 2026-01-11 00:07:53,950 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 19:08:25] 2026-01-11 00:07:53,950 | INFO     | update_server=False
[2026-01-10 19:08:25] 2026-01-11 00:07:53,951 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 19:08:25] 2026-01-11 00:07:53,951 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 19:08:25] 2026-01-11 00:07:53,952 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 19:08:25] 2026-01-11 00:07:54,054 | INFO     | all job control threads have been joined
[2026-01-10 19:08:25] 2026-01-11 00:07:54,358 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 19:08:25] 2026-01-11 00:07:54,359 | INFO     | aborting loop
[2026-01-10 19:08:25] 2026-01-11 00:07:54,578 | INFO     | all data control threads have been joined
[2026-01-10 19:08:25] 2026-01-11 00:07:54,952 | INFO     | [job] retrieve thread has finished
[2026-01-10 19:08:25] 2026-01-11 00:07:54,957 | INFO     | [job] queue monitor thread has finished
[2026-01-10 19:08:25] 2026-01-11 00:07:55,052 | INFO     | [payload] failed_post thread has finished
[2026-01-10 19:08:25] 2026-01-11 00:07:55,060 | INFO     | [job] control thread has finished
[2026-01-10 19:08:25] 2026-01-11 00:07:55,065 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 19:08:25] 2026-01-11 00:07:55,363 | INFO     | all payload control threads have been joined
[2026-01-10 19:08:25] 2026-01-11 00:07:55,364 | INFO     | [job] job monitor thread has finished
[2026-01-10 19:08:25] 2026-01-11 00:07:55,403 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 19:08:25] 2026-01-11 00:07:55,465 | INFO     | [job] validate thread has finished
[2026-01-10 19:08:25] 2026-01-11 00:07:55,583 | INFO     | [data] control thread has finished
[2026-01-10 19:08:25] 2026-01-11 00:07:55,753 | INFO     | [data] copytool_in thread has finished
[2026-01-10 19:08:25] 2026-01-11 00:07:55,760 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 19:08:25] 2026-01-11 00:07:55,954 | INFO     | [payload] validate_post thread has finished
[2026-01-10 19:08:25] 2026-01-11 00:07:55,957 | INFO     | [data] copytool_out thread has finished
[2026-01-10 19:08:25] 2026-01-11 00:07:56,366 | INFO     | [payload] control thread has finished
[2026-01-10 19:08:25] 2026-01-11 00:07:56,752 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 19:08:25] 2026-01-11 00:08:00,758 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 19:08:25] 2026-01-11 00:08:04,062 | INFO     | job.realtimelogging is not enabled
[2026-01-10 19:08:25] 2026-01-11 00:08:05,068 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 19:08:25] 2026-01-11 00:08:15,276 | INFO     | [monitor] cgroup control has ended
[2026-01-10 19:08:25] 2026-01-11 00:08:16,431 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140050394416960)>', '<ExcThread(monitor, started 140049270167296)>']
[2026-01-10 19:08:25] 2026-01-11 00:08:21,455 | INFO     | all workflow threads have been joined
[2026-01-10 19:08:25] 2026-01-11 00:08:21,456 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 19:08:25] 2026-01-11 00:08:21,456 | INFO     | traces error code: 0
[2026-01-10 19:08:25] 2026-01-11 00:08:21,456 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 19:08:25] 2026-01-11 00:08:24,856 | INFO     | PID=8836 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-10 19:08:25] 2026-01-11 00:08:24,857 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 19:08:25] 2026-01-11 00:08:24,857 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 19:08:25] 2026-01-11 00:08:24,857 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 19:08:25] 2026-01-11 00:08:24,857 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 19:08:25] 2026-01-11 00:08:24,857 | INFO     | [monitor] control thread has ended
[2026-01-10 19:08:25] 2026-01-11 00:08:24,967 [wrapper] ==== pilot stdout END ====
[2026-01-10 19:08:25] 2026-01-11 00:08:24,972 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 19:08:25] 2026-01-11 00:08:24,976 [wrapper] pilotpid: 8836
[2026-01-10 19:08:25] 2026-01-11 00:08:24,980 [wrapper] Pilot exit status: 0
[2026-01-10 19:08:25] 2026-01-11 00:08:24,999 [wrapper] pandaids: 6965803331
[2026-01-10 19:08:25] 2026-01-11 00:08:25,041 [wrapper] cleanup supervisor_pilot  6806 8837
[2026-01-10 19:08:25] 2026-01-11 00:08:25,046 [wrapper] Test setup, not cleaning
[2026-01-10 19:08:25] 2026-01-11 00:08:25,051 [wrapper] apfmon messages muted
[2026-01-10 19:08:25] 2026-01-11 00:08:25,056 [wrapper] ==== wrapper stdout END ====
[2026-01-10 19:08:25] 2026-01-11 00:08:25,060 [wrapper] ==== wrapper stderr END ====
[2026-01-10 19:08:25]  *** Error codes and diagnostics ***
[2026-01-10 19:08:25]     "exeErrorCode": 0,
[2026-01-10 19:08:25]     "exeErrorDiag": "",
[2026-01-10 19:08:25]     "pilotErrorCode": 0,
[2026-01-10 19:08:25]     "pilotErrorDiag": "",
[2026-01-10 19:08:25]  *** Listing of results directory ***
[2026-01-10 19:08:25] total 435960
[2026-01-10 19:08:25] -rw-r--r-- 1 boincer umatlas    579449 Jan 10 18:00 pilot3.tar.gz
[2026-01-10 19:08:25] -rwx------ 1 boincer umatlas     36322 Jan 10 18:05 runpilot2-wrapper.sh
[2026-01-10 19:08:25] -rw-r--r-- 1 boincer umatlas      5112 Jan 10 18:05 queuedata.json
[2026-01-10 19:08:25] -rw-r--r-- 1 boincer umatlas       100 Jan 10 18:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 19:08:25] -rwxr-xr-x 1 boincer umatlas      7986 Jan 10 18:09 run_atlas
[2026-01-10 19:08:25] -rw-r--r-- 1 boincer umatlas       105 Jan 10 18:09 job.xml
[2026-01-10 19:08:25] -rw-r--r-- 2 boincer umatlas 392436403 Jan 10 18:09 EVNT.47962006._000092.pool.root.1
[2026-01-10 19:08:25] -rw-r--r-- 2 boincer umatlas     15847 Jan 10 18:09 start_atlas.sh
[2026-01-10 19:08:25] drwxrwx--x 2 boincer umatlas      4096 Jan 10 18:09 shared
[2026-01-10 19:08:25] -rw-r--r-- 2 boincer umatlas    592609 Jan 10 18:09 input.tar.gz
[2026-01-10 19:08:25] -rw-r--r-- 1 boincer umatlas         0 Jan 10 18:09 boinc_lockfile
[2026-01-10 19:08:25] -rw-r--r-- 1 boincer umatlas      2890 Jan 10 18:09 pandaJob.out
[2026-01-10 19:08:25] -rw------- 1 boincer umatlas        57 Jan 10 18:09 setup.sh.local
[2026-01-10 19:08:25] -rw------- 1 boincer umatlas    989548 Jan 10 18:10 agis_schedconf.cvmfs.json
[2026-01-10 19:08:25] -rw------- 1 boincer umatlas   1516240 Jan 10 18:10 agis_ddmendpoints.agis.ALL.json
[2026-01-10 19:08:25] drwx------ 5 boincer umatlas      4096 Jan 10 18:10 pilot3
[2026-01-10 19:08:25] -rw-r--r-- 1 boincer umatlas       530 Jan 10 18:58 boinc_task_state.xml
[2026-01-10 19:08:25] -rw-r--r-- 1 boincer umatlas      5910 Jan 10 19:02 init_data.xml
[2026-01-10 19:08:25] -rw------- 1 boincer umatlas  46648694 Jan 10 19:07 HITS.47962010._002783.pool.root.1
[2026-01-10 19:08:25] -rw------- 1 boincer umatlas      1049 Jan 10 19:07 memory_monitor_summary.json
[2026-01-10 19:08:25] -rw------- 1 boincer umatlas   1186998 Jan 10 19:07 log.47962010._002783.job.log.tgz.1
[2026-01-10 19:08:25] -rw------- 1 boincer umatlas      8611 Jan 10 19:07 heartbeat.json
[2026-01-10 19:08:25] -rw------- 1 boincer umatlas        95 Jan 10 19:07 pilot_heartbeat.json
[2026-01-10 19:08:25] -rw-r--r-- 1 boincer umatlas        27 Jan 10 19:08 wrapper_checkpoint.txt
[2026-01-10 19:08:25] -rw-r--r-- 1 boincer umatlas      8192 Jan 10 19:08 boinc_mmap_file
[2026-01-10 19:08:25] -rw------- 1 boincer umatlas       744 Jan 10 19:08 pilotlog.txt
[2026-01-10 19:08:25] -rw------- 1 boincer umatlas    528345 Jan 10 19:08 log.47962010._002783.job.log.1
[2026-01-10 19:08:25] -rw------- 1 boincer umatlas       353 Jan 10 19:08 output.list
[2026-01-10 19:08:25] -rw-r--r-- 1 boincer umatlas       620 Jan 10 19:08 runtime_log
[2026-01-10 19:08:25] -rw------- 1 boincer umatlas   1730560 Jan 10 19:08 result.tar.gz
[2026-01-10 19:08:25] -rw-r--r-- 1 boincer umatlas      9342 Jan 10 19:08 runtime_log.err
[2026-01-10 19:08:25] -rw------- 1 boincer umatlas       659 Jan 10 19:08 eTnKDmJCxy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmoehKDmRszJNn.diag
[2026-01-10 19:08:25] -rw-r--r-- 1 boincer umatlas     22583 Jan 10 19:08 stderr.txt
[2026-01-10 19:08:25] HITS file was successfully produced:
[2026-01-10 19:08:25] -rw------- 1 boincer umatlas 46648694 Jan 10 19:07 shared/HITS.pool.root.1
[2026-01-10 19:08:25]  *** Contents of shared directory: ***
[2026-01-10 19:08:25] total 431088
[2026-01-10 19:08:25] -rw-r--r-- 2 boincer umatlas 392436403 Jan 10 18:09 ATLAS.root_0
[2026-01-10 19:08:25] -rw-r--r-- 2 boincer umatlas     15847 Jan 10 18:09 start_atlas.sh
[2026-01-10 19:08:25] -rw-r--r-- 2 boincer umatlas    592609 Jan 10 18:09 input.tar.gz
[2026-01-10 19:08:25] -rw------- 1 boincer umatlas  46648694 Jan 10 19:07 HITS.pool.root.1
[2026-01-10 19:08:25] -rw------- 1 boincer umatlas   1730560 Jan 10 19:08 result.tar.gz
19:08:27 (4973): run_atlas exited; CPU time 21952.795431
19:08:27 (4973): called boinc_finish(0)

</stderr_txt>
]]>

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