Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:11:11 (3758415): wrapper (7.7.26015): starting
18:11:11 (3758415): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 18:11:11] Arguments: --nthreads 8
[2026-01-10 18:11:11] Threads: 8
[2026-01-10 18:11:11] Checking for CVMFS
[2026-01-10 18:11:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 18:11:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 18:11:12] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 18:11:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 18:11:12] 2.13.3.0 11772 95447 237184 154996 3 67 28597736 32935937 21108 16776704 0 510431638 99.508 669496773 36856 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 18:11:12] CVMFS is ok
[2026-01-10 18:11:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 18:11:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 18:11:12] Further information can be found at the LHC@home message board.
[2026-01-10 18:11:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 18:11:12] Checking for apptainer binary...
[2026-01-10 18:11:12] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 18:11:12] Running /usr/bin/apptainer --version
[2026-01-10 18:11:12] apptainer version 1.4.5-2.el9
[2026-01-10 18:11:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 18:11:12] c7-3-28.aglt2.org
[2026-01-10 18:11:12] apptainer works
[2026-01-10 18:11:12] Set ATHENA_PROC_NUMBER=8
[2026-01-10 18:11:12] Set ATHENA_CORE_NUMBER=8
[2026-01-10 18:11:12] Starting ATLAS job with PandaID=6965803265
[2026-01-10 18:11:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 19:02:02]  *** The last 200 lines of the pilot log: ***
[2026-01-10 19:02:02]  status_code=0
[2026-01-10 19:02:02]  storage_token=
[2026-01-10 19:02:02]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6965803265/log.47962010._002717.job.log.tgz.1
[2026-01-10 19:02:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/58/ec/log.47962010._002717.job.log.tgz.1
[2026-01-10 19:02:02]  workdir=None
[2026-01-10 19:02:02] ]
[2026-01-10 19:02:02] 2026-01-11 00:01:17,340 | INFO     | time since job start (2984s) is within the limit (349056.0s)
[2026-01-10 19:02:02] 2026-01-11 00:01:17,347 | INFO     | transferring file log.47962010._002717.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6965803265/log.47962010._002717.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-10 19:02:02] 2026-01-11 00:01:17,347 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6965803265/log.47962010._002717.job.log.tgz.1 /tmp/boinchome/slots/3/log.47962010._002717.job
[2026-01-10 19:02:02] 2026-01-11 00:01:17,365 | INFO     | adding to output.list: log.47962010._002717.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/58/ec/log.47962010._002717.job.log.tgz.
[2026-01-10 19:02:02] 2026-01-11 00:01:17,366 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 19:02:02] 2026-01-11 00:01:17,366 | INFO     | summary of transferred files:
[2026-01-10 19:02:02] 2026-01-11 00:01:17,366 | INFO     |  -- lfn=log.47962010._002717.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 19:02:02] 2026-01-11 00:01:17,366 | INFO     | stage-out finished correctly
[2026-01-10 19:02:02] 2026-01-11 00:01:19,346 | INFO     | time since job start (2986s) is within the limit (349056.0s)
[2026-01-10 19:02:02] 2026-01-11 00:01:20,793 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 19:02:02] 2026-01-11 00:01:20,863 | INFO     | job 6965803265 has state=finished
[2026-01-10 19:02:02] 2026-01-11 00:01:20,863 | INFO     | preparing for final server update for job 6965803265 in state='finished'
[2026-01-10 19:02:02] 2026-01-11 00:01:20,863 | INFO     | this job has now completed (state=finished)
[2026-01-10 19:02:02] 2026-01-11 00:01:20,863 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 19:02:02] 2026-01-11 00:01:20,863 | INFO     | log transfer has been attempted: DONE
[2026-01-10 19:02:02] 2026-01-11 00:01:20,864 | INFO     | job 6965803265 has finished - writing final server update
[2026-01-10 19:02:02] 2026-01-11 00:01:20,864 | INFO     | total number of processed events: 50 (read)
[2026-01-10 19:02:02] 2026-01-11 00:01:20,864 | INFO     | executing command: lscpu
[2026-01-10 19:02:02] 2026-01-11 00:01:20,918 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 19:02:02] 2026-01-11 00:01:21,352 | INFO     | time since job start (2988s) is within the limit (349056.0s)
[2026-01-10 19:02:02] 2026-01-11 00:01:21,906 | WARNING  | process 3801830 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 19:02:02] 2026-01-11 00:01:21,906 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6965803265/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 19:02:02] 2026-01-11 00:01:22,394 | INFO     | number of running child processes to parent process 3801830: 1
[2026-01-10 19:02:02] 2026-01-11 00:01:22,394 | INFO     | maximum number of monitored processes: 13
[2026-01-10 19:02:02] 2026-01-11 00:01:22,961 | INFO     | PID=3774491 has CPU usage=13.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-10 19:02:02] 2026-01-11 00:01:22,961 | INFO     | .. there are 29 such processes running
[2026-01-10 19:02:02] 2026-01-11 00:01:23,963 | INFO     | time since job start (2990s) is within the limit (349056.0s)
[2026-01-10 19:02:02] 2026-01-11 00:01:24,900 | INFO     | monitor loop #204: job 0:6965803265 is in state 'finished'
[2026-01-10 19:02:02] 2026-01-11 00:01:24,900 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 19:02:02] 2026-01-11 00:01:25,970 | INFO     | time since job start (2992s) is within the limit (349056.0s)
[2026-01-10 19:02:02] 2026-01-11 00:01:27,403 | INFO     | monitor loop #205: job 0:6965803265 is in state 'finished'
[2026-01-10 19:02:02] 2026-01-11 00:01:27,403 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 19:02:02] 2026-01-11 00:01:27,976 | INFO     | time since job start (2994s) is within the limit (349056.0s)
[2026-01-10 19:02:02] 2026-01-11 00:01:28,321 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 19:02:02] 2026-01-11 00:01:28,334 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3271.378197916667
[2026-01-10 19:02:02] 2026-01-11 00:01:28,377 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6965803265/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 19:02:02] 2026-01-11 00:01:28,378 | INFO     | extracted standard info from prmon json
[2026-01-10 19:02:02] 2026-01-11 00:01:28,378 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 19:02:02] 2026-01-11 00:01:28,378 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 19:02:02] 2026-01-11 00:01:28,379 | INFO     | fitting pss+swap vs Time
[2026-01-10 19:02:02] 2026-01-11 00:01:28,380 | INFO     | sum of square deviations: 22957102.47619046
[2026-01-10 19:02:02] 2026-01-11 00:01:28,380 | INFO     | sum of deviations: 1541562316.7142868
[2026-01-10 19:02:02] 2026-01-11 00:01:28,380 | INFO     | mean x: 1768088288.1904762
[2026-01-10 19:02:02] 2026-01-11 00:01:28,380 | INFO     | mean y: 2461450.785714286
[2026-01-10 19:02:02] 2026-01-11 00:01:28,380 | INFO     | intersect: -118724119158.64151
[2026-01-10 19:02:02] 2026-01-11 00:01:28,380 | INFO     | chi2: 0.23249106399634106
[2026-01-10 19:02:02] 2026-01-11 00:01:28,380 | INFO     | current memory leak: 67.15 B/s (using 42 data points, chi2=0.23)
[2026-01-10 19:02:02] 2026-01-11 00:01:28,380 | INFO     | could have reported an average CPU frequency of 3221 MHz (5 samples)
[2026-01-10 19:02:02] 2026-01-11 00:01:28,380 | INFO     | ..............................
[2026-01-10 19:02:02] 2026-01-11 00:01:28,380 | INFO     | . Timing measurements:
[2026-01-10 19:02:02] 2026-01-11 00:01:28,381 | INFO     | . get job = 0 s
[2026-01-10 19:02:02] 2026-01-11 00:01:28,381 | INFO     | . initial setup = 3 s
[2026-01-10 19:02:02] 2026-01-11 00:01:28,381 | INFO     | . payload setup = 11 s
[2026-01-10 19:02:02] 2026-01-11 00:01:28,381 | INFO     | . stage-in = 0 s
[2026-01-10 19:02:02] 2026-01-11 00:01:28,381 | INFO     | . payload execution = 2950 s
[2026-01-10 19:02:02] 2026-01-11 00:01:28,381 | INFO     | . stage-out = 0 s
[2026-01-10 19:02:02] 2026-01-11 00:01:28,381 | INFO     | . log creation = 0 s
[2026-01-10 19:02:02] 2026-01-11 00:01:28,381 | INFO     | ..............................
[2026-01-10 19:02:02] 2026-01-11 00:01:28,453 | INFO     | 
[2026-01-10 19:02:02] 2026-01-11 00:01:28,454 | INFO     | job summary report
[2026-01-10 19:02:02] 2026-01-11 00:01:28,454 | INFO     | --------------------------------------------------
[2026-01-10 19:02:02] 2026-01-11 00:01:28,454 | INFO     | PanDA job id: 6965803265
[2026-01-10 19:02:02] 2026-01-11 00:01:28,454 | INFO     | task id: 47962010
[2026-01-10 19:02:02] 2026-01-11 00:01:28,454 | INFO     | errors: (none)
[2026-01-10 19:02:02] 2026-01-11 00:01:28,454 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 19:02:02] 2026-01-11 00:01:28,454 | INFO     | pilot state: finished 
[2026-01-10 19:02:02] 2026-01-11 00:01:28,454 | INFO     | transexitcode: 0
[2026-01-10 19:02:02] 2026-01-11 00:01:28,455 | INFO     | exeerrorcode: 0
[2026-01-10 19:02:02] 2026-01-11 00:01:28,455 | INFO     | exeerrordiag: 
[2026-01-10 19:02:02] 2026-01-11 00:01:28,455 | INFO     | exitcode: 0
[2026-01-10 19:02:02] 2026-01-11 00:01:28,455 | INFO     | exitmsg: OK
[2026-01-10 19:02:02] 2026-01-11 00:01:28,455 | INFO     | cpuconsumptiontime: 10821 s
[2026-01-10 19:02:02] 2026-01-11 00:01:28,455 | INFO     | nevents: 50
[2026-01-10 19:02:02] 2026-01-11 00:01:28,455 | INFO     | neventsw: 0
[2026-01-10 19:02:02] 2026-01-11 00:01:28,455 | INFO     | pid: 3801830
[2026-01-10 19:02:02] 2026-01-11 00:01:28,455 | INFO     | pgrp: 3801830
[2026-01-10 19:02:02] 2026-01-11 00:01:28,455 | INFO     | corecount: 8
[2026-01-10 19:02:02] 2026-01-11 00:01:28,455 | INFO     | event service: False
[2026-01-10 19:02:02] 2026-01-11 00:01:28,465 | INFO     | sizes: {0: 2283741, 1: 2284597, 9: 2284859, 12: 2284887, 2965: 2311162, 2966: 2320156, 2970: 2320340, 2977: 2320618}
[2026-01-10 19:02:02] 2026-01-11 00:01:28,465 | INFO     | --------------------------------------------------
[2026-01-10 19:02:02] 2026-01-11 00:01:28,465 | INFO     | 
[2026-01-10 19:02:02] 2026-01-11 00:01:28,465 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-10 19:02:02] 2026-01-11 00:01:28,482 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 19:02:02] 2026-01-11 00:01:28,482 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 19:02:02] 2026-01-11 00:01:28,482 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 19:02:02] 2026-01-11 00:01:28,482 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 19:02:02] 2026-01-11 00:01:28,482 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 19:02:02] 2026-01-11 00:01:28,483 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 19:02:02] 2026-01-11 00:01:28,483 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 19:02:02] 2026-01-11 00:01:28,483 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 19:02:02] 2026-01-11 00:01:28,483 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 19:02:02] 2026-01-11 00:01:28,483 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 19:02:02] 2026-01-11 00:01:28,483 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 19:02:02] 2026-01-11 00:01:28,483 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 19:02:02] 2026-01-11 00:01:28,483 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 19:02:02] 2026-01-11 00:01:28,483 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 19:02:02] 2026-01-11 00:01:28,483 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 19:02:02] 2026-01-11 00:01:28,483 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 19:02:02] 2026-01-11 00:01:28,483 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 19:02:02] 2026-01-11 00:01:28,483 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 19:02:02] 2026-01-11 00:01:28,483 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 19:02:02] 2026-01-11 00:01:28,483 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 19:02:02] 2026-01-11 00:01:28,483 | INFO     | job 6965803265 has completed (purged errors)
[2026-01-10 19:02:02] 2026-01-11 00:01:28,484 | INFO     | overall cleanup function is called
[2026-01-10 19:02:02] 2026-01-11 00:01:29,499 | INFO     | --- collectZombieJob: --- 10, [3801830]
[2026-01-10 19:02:02] 2026-01-11 00:01:29,499 | INFO     | zombie collector waiting for pid 3801830
[2026-01-10 19:02:02] 2026-01-11 00:01:29,499 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 19:02:02] 2026-01-11 00:01:29,499 | INFO     | collected zombie processes
[2026-01-10 19:02:02] 2026-01-11 00:01:29,499 | INFO     | will attempt to kill all subprocesses of pid=3801830
[2026-01-10 19:02:02] 2026-01-11 00:01:29,950 | INFO     | process IDs to be killed: [3801830] (in reverse order)
[2026-01-10 19:02:02] 2026-01-11 00:01:30,078 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 19:02:02] 2026-01-11 00:01:30,078 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 19:02:02] 2026-01-11 00:01:30,101 | INFO     | did not find any defunct processes belonging to 3801830
[2026-01-10 19:02:02] 2026-01-11 00:01:30,121 | INFO     | did not find any defunct processes belonging to 3801830
[2026-01-10 19:02:02] 2026-01-11 00:01:30,121 | INFO     | ready for new job
[2026-01-10 19:02:02] 2026-01-11 00:01:30,121 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 19:02:02] 2026-01-11 00:01:30,123 | INFO     | ***************************************
[2026-01-10 19:02:02] 2026-01-11 00:01:30,123 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 19:02:02] 2026-01-11 00:01:30,123 | INFO     | ***************************************
[2026-01-10 19:02:02] 2026-01-11 00:01:30,123 | INFO     | 
[2026-01-10 19:02:02] 2026-01-11 00:01:30,127 | INFO     | architecture information:
[2026-01-10 19:02:02] 2026-01-11 00:01:30,128 | INFO     | executing command: cat /etc/os-release
[2026-01-10 19:02:02] 2026-01-11 00:01:30,146 | INFO     | cat /etc/os-release:
[2026-01-10 19:02:02] NAME="CentOS Linux"
[2026-01-10 19:02:02] VERSION="7 (Core)"
[2026-01-10 19:02:02] ID="centos"
[2026-01-10 19:02:02] ID_LIKE="rhel fedora"
[2026-01-10 19:02:02] VERSION_ID="7"
[2026-01-10 19:02:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 19:02:02] ANSI_COLOR="0;31"
[2026-01-10 19:02:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 19:02:02] HOME_URL="https://www.centos.org/"
[2026-01-10 19:02:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 19:02:02] 
[2026-01-10 19:02:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 19:02:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 19:02:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 19:02:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 19:02:02] 
[2026-01-10 19:02:02] 2026-01-11 00:01:30,147 | INFO     | ***************************************
[2026-01-10 19:02:02] 2026-01-11 00:01:30,652 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-10 19:02:02] 2026-01-11 00:01:30,693 | INFO     | sufficient remaining disk space (73962356736 B)
[2026-01-10 19:02:02] 2026-01-11 00:01:30,693 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 19:02:02] 2026-01-11 00:01:30,694 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 19:02:02] 2026-01-11 00:01:30,694 | INFO     | update_server=False
[2026-01-10 19:02:02] 2026-01-11 00:01:30,694 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 19:02:02] 2026-01-11 00:01:30,694 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 19:02:02] 2026-01-11 00:01:30,922 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 19:02:02] 2026-01-11 00:01:30,922 | INFO     | aborting loop
[2026-01-10 19:02:02] 2026-01-11 00:01:31,043 | INFO     | all payload control threads have been joined
[2026-01-10 19:02:02] 2026-01-11 00:01:31,313 | INFO     | all job control threads have been joined
[2026-01-10 19:02:02] 2026-01-11 00:01:31,386 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 19:02:02] 2026-01-11 00:01:31,392 | INFO     | all data control threads have been joined
[2026-01-10 19:02:02] 2026-01-11 00:01:31,700 | INFO     | [job] retrieve thread has finished
[2026-01-10 19:02:02] 2026-01-11 00:01:31,701 | INFO     | [payload] failed_post thread has finished
[2026-01-10 19:02:02] 2026-01-11 00:01:31,749 | INFO     | [payload] validate_post thread has finished
[2026-01-10 19:02:02] 2026-01-11 00:01:31,923 | INFO     | [job] validate thread has finished
[2026-01-10 19:02:02] 2026-01-11 00:01:31,929 | INFO     | [job] job monitor thread has finished
[2026-01-10 19:02:02] 2026-01-11 00:01:32,049 | INFO     | [payload] control thread has finished
[2026-01-10 19:02:02] 2026-01-11 00:01:32,111 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 19:02:02] 2026-01-11 00:01:32,319 | INFO     | [job] control thread has finished
[2026-01-10 19:02:02] 2026-01-11 00:01:32,354 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 19:02:02] 2026-01-11 00:01:32,397 | INFO     | [data] control thread has finished
[2026-01-10 19:02:02] 2026-01-11 00:01:32,664 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 19:02:02] 2026-01-11 00:01:32,701 | INFO     | [data] copytool_out thread has finished
[2026-01-10 19:02:02] 2026-01-11 00:01:32,977 | INFO     | [data] copytool_in thread has finished
[2026-01-10 19:02:02] 2026-01-11 00:01:33,487 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 19:02:02] 2026-01-11 00:01:34,492 | INFO     | [job] queue monitor thread has finished
[2026-01-10 19:02:02] 2026-01-11 00:01:35,393 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 19:02:02] 2026-01-11 00:01:38,188 | INFO     | [monitor] cgroup control has ended
[2026-01-10 19:02:02] 2026-01-11 00:01:41,037 | INFO     | job.realtimelogging is not enabled
[2026-01-10 19:02:02] 2026-01-11 00:01:42,043 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 19:02:02] 2026-01-11 00:01:43,282 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140465753364288)>', '<ExcThread(monitor, started 140465244444416)>']
[2026-01-10 19:02:02] 2026-01-11 00:01:48,309 | INFO     | all workflow threads have been joined
[2026-01-10 19:02:02] 2026-01-11 00:01:48,309 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 19:02:02] 2026-01-11 00:01:48,310 | INFO     | traces error code: 0
[2026-01-10 19:02:02] 2026-01-11 00:01:48,310 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 19:02:02] 2026-01-11 00:02:01,559 | INFO     | PID=3774491 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 19:02:02] 2026-01-11 00:02:01,559 | INFO     | .. there are 29 such processes running
[2026-01-10 19:02:02] 2026-01-11 00:02:01,560 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 19:02:02] 2026-01-11 00:02:01,560 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 19:02:02] 2026-01-11 00:02:01,560 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 19:02:02] 2026-01-11 00:02:01,560 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 19:02:02] 2026-01-11 00:02:01,560 | INFO     | [monitor] control thread has ended
[2026-01-10 19:02:02] 2026-01-11 00:02:01,748 [wrapper] ==== pilot stdout END ====
[2026-01-10 19:02:02] 2026-01-11 00:02:01,755 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 19:02:02] 2026-01-11 00:02:01,758 [wrapper] pilotpid: 3774491
[2026-01-10 19:02:02] 2026-01-11 00:02:01,762 [wrapper] Pilot exit status: 0
[2026-01-10 19:02:02] 2026-01-11 00:02:01,792 [wrapper] pandaids: 6965803265
[2026-01-10 19:02:02] 2026-01-11 00:02:02,017 [wrapper] cleanup supervisor_pilot 4035842 3774492
[2026-01-10 19:02:02] 2026-01-11 00:02:02,021 [wrapper] Test setup, not cleaning
[2026-01-10 19:02:02] 2026-01-11 00:02:02,023 [wrapper] apfmon messages muted
[2026-01-10 19:02:02] 2026-01-11 00:02:02,025 [wrapper] ==== wrapper stdout END ====
[2026-01-10 19:02:02] 2026-01-11 00:02:02,032 [wrapper] ==== wrapper stderr END ====
[2026-01-10 19:02:02]  *** Error codes and diagnostics ***
[2026-01-10 19:02:02]     "exeErrorCode": 0,
[2026-01-10 19:02:02]     "exeErrorDiag": "",
[2026-01-10 19:02:02]     "pilotErrorCode": 0,
[2026-01-10 19:02:02]     "pilotErrorDiag": "",
[2026-01-10 19:02:02]  *** Listing of results directory ***
[2026-01-10 19:02:02] total 436392
[2026-01-10 19:02:02] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 18:00 pilot3.tar.gz
[2026-01-10 19:02:02] -rwx------. 1 boincer umatlas     36322 Jan 10 18:05 runpilot2-wrapper.sh
[2026-01-10 19:02:02] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 18:05 queuedata.json
[2026-01-10 19:02:02] -rw-r--r--. 1 boincer umatlas       100 Jan 10 18:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 19:02:02] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 18:11 run_atlas
[2026-01-10 19:02:02] -rw-r--r--. 1 boincer umatlas       105 Jan 10 18:11 job.xml
[2026-01-10 19:02:02] -rw-r--r--. 2 boincer umatlas 393042859 Jan 10 18:11 EVNT.47962006._000069.pool.root.1
[2026-01-10 19:02:02] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 18:11 start_atlas.sh
[2026-01-10 19:02:02] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 18:11 shared
[2026-01-10 19:02:02] -rw-r--r--. 2 boincer umatlas    592608 Jan 10 18:11 input.tar.gz
[2026-01-10 19:02:02] -rw-r--r--. 1 boincer umatlas         0 Jan 10 18:11 boinc_lockfile
[2026-01-10 19:02:02] -rw-r--r--. 1 boincer umatlas      2890 Jan 10 18:11 pandaJob.out
[2026-01-10 19:02:02] -rw-------. 1 boincer umatlas        57 Jan 10 18:11 setup.sh.local
[2026-01-10 19:02:02] -rw-------. 1 boincer umatlas    989548 Jan 10 18:11 agis_schedconf.cvmfs.json
[2026-01-10 19:02:02] -rw-------. 1 boincer umatlas   1516240 Jan 10 18:11 agis_ddmendpoints.agis.ALL.json
[2026-01-10 19:02:02] drwx------. 5 boincer umatlas      4096 Jan 10 18:11 pilot3
[2026-01-10 19:02:02] -rw-r--r--. 1 boincer umatlas      6943 Jan 10 18:55 init_data.xml
[2026-01-10 19:02:02] -rw-r--r--. 1 boincer umatlas       529 Jan 10 18:55 boinc_task_state.xml
[2026-01-10 19:02:02] -rw-------. 1 boincer umatlas  46669992 Jan 10 19:01 HITS.47962010._002717.pool.root.1
[2026-01-10 19:02:02] -rw-------. 1 boincer umatlas      1034 Jan 10 19:01 memory_monitor_summary.json
[2026-01-10 19:02:02] -rw-------. 1 boincer umatlas   1162553 Jan 10 19:01 log.47962010._002717.job.log.tgz.1
[2026-01-10 19:02:02] -rw-------. 1 boincer umatlas        95 Jan 10 19:01 pilot_heartbeat.json
[2026-01-10 19:02:02] -rw-------. 1 boincer umatlas      8538 Jan 10 19:01 heartbeat.json
[2026-01-10 19:02:02] -rw-r--r--. 1 boincer umatlas        27 Jan 10 19:01 wrapper_checkpoint.txt
[2026-01-10 19:02:02] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 19:01 boinc_mmap_file
[2026-01-10 19:02:02] -rw-------. 1 boincer umatlas       823 Jan 10 19:02 pilotlog.txt
[2026-01-10 19:02:02] -rw-------. 1 boincer umatlas    456227 Jan 10 19:02 log.47962010._002717.job.log.1
[2026-01-10 19:02:02] -rw-------. 1 boincer umatlas       353 Jan 10 19:02 output.list
[2026-01-10 19:02:02] -rw-r--r--. 1 boincer umatlas       620 Jan 10 19:02 runtime_log
[2026-01-10 19:02:02] -rw-------. 1 boincer umatlas   1638400 Jan 10 19:02 result.tar.gz
[2026-01-10 19:02:02] -rw-r--r--. 1 boincer umatlas      9337 Jan 10 19:02 runtime_log.err
[2026-01-10 19:02:02] -rw-------. 1 boincer umatlas       652 Jan 10 19:02 5dGODmICxy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmIehKDmabyQNm.diag
[2026-01-10 19:02:02] -rw-r--r--. 1 boincer umatlas     22295 Jan 10 19:02 stderr.txt
[2026-01-10 19:02:02] HITS file was successfully produced:
[2026-01-10 19:02:02] -rw-------. 1 boincer umatlas 46669992 Jan 10 19:01 shared/HITS.pool.root.1
[2026-01-10 19:02:02]  *** Contents of shared directory: ***
[2026-01-10 19:02:02] total 431612
[2026-01-10 19:02:02] -rw-r--r--. 2 boincer umatlas 393042859 Jan 10 18:11 ATLAS.root_0
[2026-01-10 19:02:02] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 18:11 start_atlas.sh
[2026-01-10 19:02:02] -rw-r--r--. 2 boincer umatlas    592608 Jan 10 18:11 input.tar.gz
[2026-01-10 19:02:02] -rw-------. 1 boincer umatlas  46669992 Jan 10 19:01 HITS.pool.root.1
[2026-01-10 19:02:02] -rw-------. 1 boincer umatlas   1638400 Jan 10 19:02 result.tar.gz
19:02:03 (3758415): run_atlas exited; CPU time 10864.550771
19:02:03 (3758415): called boinc_finish(0)

</stderr_txt>
]]>

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