Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:10:06 (26043): wrapper (7.7.26015): starting
00:10:06 (26043): wrapper: running run_atlas (--nthreads 8)
[2026-01-11 00:10:06] Arguments: --nthreads 8
[2026-01-11 00:10:06] Threads: 8
[2026-01-11 00:10:06] Checking for CVMFS
[2026-01-11 00:10:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 00:10:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 00:10:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 00:10:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 00:10:11] 2.11.2.0 25330 37474 130788 154996 1 11 17509042 25165824 96 130560 0 17061277 99.798 11289040 3516 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-11 00:10:11] CVMFS is ok
[2026-01-11 00:10:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 00:10:11] Checking for apptainer binary...
[2026-01-11 00:10:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 00:10:11] Running /usr/bin/apptainer --version
[2026-01-11 00:10:11] apptainer version 1.3.2-1.el7
[2026-01-11 00:10:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 00:10:31] cg-vwn437.simple-grid.lan
[2026-01-11 00:10:31] apptainer works
[2026-01-11 00:10:31] Set ATHENA_PROC_NUMBER=8
[2026-01-11 00:10:31] Set ATHENA_CORE_NUMBER=8
[2026-01-11 00:10:31] Starting ATLAS job with PandaID=6965803282
[2026-01-11 00:10:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 02:02:26]  *** The last 200 lines of the pilot log: ***
[2026-01-11 02:02:26] 2026-01-11 01:00:56,927 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 02:02:26] 2026-01-11 01:00:58,220 | INFO     | time since job start (6351s) is within the limit (349056.0s)
[2026-01-11 02:02:26] 2026-01-11 01:00:59,430 | INFO     | monitor loop #547: job 0:6965803282 is in state 'finished'
[2026-01-11 02:02:26] 2026-01-11 01:00:59,431 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 02:02:26] 2026-01-11 01:01:00,226 | INFO     | time since job start (6353s) is within the limit (349056.0s)
[2026-01-11 02:02:26] 2026-01-11 01:01:01,427 | INFO     | PID=30077 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-11 02:02:26] 2026-01-11 01:01:01,428 | INFO     | .. there are 2 such processes running
[2026-01-11 02:02:26] 2026-01-11 01:01:01,939 | INFO     | monitor loop #548: job 0:6965803282 is in state 'finished'
[2026-01-11 02:02:26] 2026-01-11 01:01:01,940 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 02:02:26] 2026-01-11 01:01:02,433 | INFO     | time since job start (6355s) is within the limit (349056.0s)
[2026-01-11 02:02:26] 2026-01-11 01:01:04,447 | INFO     | time since job start (6357s) is within the limit (349056.0s)
[2026-01-11 02:02:26] 2026-01-11 01:01:04,448 | INFO     | monitor loop #549: job 0:6965803282 is in state 'finished'
[2026-01-11 02:02:26] 2026-01-11 01:01:04,449 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 02:02:26] 2026-01-11 01:01:06,454 | INFO     | time since job start (6359s) is within the limit (349056.0s)
[2026-01-11 02:02:26] 2026-01-11 01:01:06,953 | INFO     | monitor loop #550: job 0:6965803282 is in state 'finished'
[2026-01-11 02:02:26] 2026-01-11 01:01:06,954 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 02:02:26] 2026-01-11 01:01:08,462 | INFO     | time since job start (6361s) is within the limit (349056.0s)
[2026-01-11 02:02:26] 2026-01-11 01:01:09,463 | INFO     | monitor loop #551: job 0:6965803282 is in state 'finished'
[2026-01-11 02:02:26] 2026-01-11 01:01:09,464 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 02:02:26] 2026-01-11 01:01:10,479 | INFO     | time since job start (6363s) is within the limit (349056.0s)
[2026-01-11 02:02:26] 2026-01-11 01:01:11,968 | INFO     | monitor loop #552: job 0:6965803282 is in state 'finished'
[2026-01-11 02:02:26] 2026-01-11 01:01:11,969 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 02:02:26] 2026-01-11 01:01:12,486 | INFO     | time since job start (6365s) is within the limit (349056.0s)
[2026-01-11 02:02:26] 2026-01-11 01:01:14,480 | INFO     | monitor loop #553: job 0:6965803282 is in state 'finished'
[2026-01-11 02:02:26] 2026-01-11 01:01:14,481 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 02:02:26] 2026-01-11 01:01:14,492 | INFO     | time since job start (6367s) is within the limit (349056.0s)
[2026-01-11 02:02:26] 2026-01-11 01:01:16,504 | INFO     | time since job start (6369s) is within the limit (349056.0s)
[2026-01-11 02:02:26] 2026-01-11 01:01:16,985 | INFO     | monitor loop #554: job 0:6965803282 is in state 'finished'
[2026-01-11 02:02:26] 2026-01-11 01:01:16,986 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 02:02:26] 2026-01-11 01:01:18,511 | INFO     | time since job start (6371s) is within the limit (349056.0s)
[2026-01-11 02:02:26] 2026-01-11 01:01:19,490 | INFO     | monitor loop #555: job 0:6965803282 is in state 'finished'
[2026-01-11 02:02:26] 2026-01-11 01:01:19,491 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 02:02:26] 2026-01-11 01:01:20,519 | INFO     | time since job start (6373s) is within the limit (349056.0s)
[2026-01-11 02:02:26] 2026-01-11 01:01:21,995 | INFO     | monitor loop #556: job 0:6965803282 is in state 'finished'
[2026-01-11 02:02:26] 2026-01-11 01:01:21,996 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 02:02:26] 2026-01-11 01:01:22,528 | INFO     | time since job start (6375s) is within the limit (349056.0s)
[2026-01-11 02:02:26] 2026-01-11 01:01:23,663 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-11 02:02:26] 2026-01-11 01:01:23,664 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-11 02:02:26] 2026-01-11 01:01:23,666 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6965803282/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 02:02:26] 2026-01-11 01:01:23,667 | INFO     | extracted standard info from prmon json
[2026-01-11 02:02:26] 2026-01-11 01:01:23,667 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 02:02:26] 2026-01-11 01:01:23,667 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 02:02:26] 2026-01-11 01:01:23,670 | INFO     | fitting pss+swap vs Time
[2026-01-11 02:02:26] 2026-01-11 01:01:23,670 | INFO     | sum of square deviations: 197164196.70930234
[2026-01-11 02:02:26] 2026-01-11 01:01:23,671 | INFO     | sum of deviations: -1094590795.9186263
[2026-01-11 02:02:26] 2026-01-11 01:01:23,671 | INFO     | mean x: 1768090402.9418604
[2026-01-11 02:02:26] 2026-01-11 01:01:23,671 | INFO     | mean y: 1818256.6162790698
[2026-01-11 02:02:26] 2026-01-11 01:01:23,671 | INFO     | intersect: 9817674855.903738
[2026-01-11 02:02:26] 2026-01-11 01:01:23,673 | INFO     | chi2: 25.266693430744166
[2026-01-11 02:02:26] 2026-01-11 01:01:23,674 | INFO     | current memory leak: -5.55 B/s (using 86 data points, chi2=25.27)
[2026-01-11 02:02:26] 2026-01-11 01:01:23,674 | INFO     | could have reported an average CPU frequency of 1999 MHz (7 samples)
[2026-01-11 02:02:26] 2026-01-11 01:01:23,674 | INFO     | ..............................
[2026-01-11 02:02:26] 2026-01-11 01:01:23,674 | INFO     | . Timing measurements:
[2026-01-11 02:02:26] 2026-01-11 01:01:23,675 | INFO     | . get job = 0 s
[2026-01-11 02:02:26] 2026-01-11 01:01:23,675 | INFO     | . initial setup = 11 s
[2026-01-11 02:02:26] 2026-01-11 01:01:23,675 | INFO     | . payload setup = 195 s
[2026-01-11 02:02:26] 2026-01-11 01:01:23,675 | INFO     | . stage-in = 0 s
[2026-01-11 02:02:26] 2026-01-11 01:01:23,675 | INFO     | . payload execution = 5831 s
[2026-01-11 02:02:26] 2026-01-11 01:01:23,675 | INFO     | . stage-out = 3 s
[2026-01-11 02:02:26] 2026-01-11 01:01:23,675 | INFO     | . log creation = 1 s
[2026-01-11 02:02:26] 2026-01-11 01:01:23,675 | INFO     | ..............................
[2026-01-11 02:02:26] 2026-01-11 01:01:23,716 | INFO     | PID=30077 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-11 02:02:26] 2026-01-11 01:01:23,716 | INFO     | .. there are 2 such processes running
[2026-01-11 02:02:26] 2026-01-11 01:01:24,279 | INFO     | 
[2026-01-11 02:02:26] 2026-01-11 01:01:24,280 | INFO     | job summary report
[2026-01-11 02:02:26] 2026-01-11 01:01:24,280 | INFO     | --------------------------------------------------
[2026-01-11 02:02:26] 2026-01-11 01:01:24,280 | INFO     | PanDA job id: 6965803282
[2026-01-11 02:02:26] 2026-01-11 01:01:24,280 | INFO     | task id: 47962010
[2026-01-11 02:02:26] 2026-01-11 01:01:24,280 | INFO     | errors: (none)
[2026-01-11 02:02:26] 2026-01-11 01:01:24,280 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 02:02:26] 2026-01-11 01:01:24,280 | INFO     | pilot state: finished 
[2026-01-11 02:02:26] 2026-01-11 01:01:24,280 | INFO     | transexitcode: 0
[2026-01-11 02:02:26] 2026-01-11 01:01:24,281 | INFO     | exeerrorcode: 0
[2026-01-11 02:02:26] 2026-01-11 01:01:24,281 | INFO     | exeerrordiag: 
[2026-01-11 02:02:26] 2026-01-11 01:01:24,281 | INFO     | exitcode: 0
[2026-01-11 02:02:26] 2026-01-11 01:01:24,281 | INFO     | exitmsg: OK
[2026-01-11 02:02:26] 2026-01-11 01:01:24,281 | INFO     | cpuconsumptiontime: 18650 s
[2026-01-11 02:02:26] 2026-01-11 01:01:24,281 | INFO     | nevents: 50
[2026-01-11 02:02:26] 2026-01-11 01:01:24,281 | INFO     | neventsw: 0
[2026-01-11 02:02:26] 2026-01-11 01:01:24,281 | INFO     | pid: 4139
[2026-01-11 02:02:26] 2026-01-11 01:01:24,282 | INFO     | pgrp: 4139
[2026-01-11 02:02:26] 2026-01-11 01:01:24,282 | INFO     | corecount: 8
[2026-01-11 02:02:26] 2026-01-11 01:01:24,282 | INFO     | event service: False
[2026-01-11 02:02:26] 2026-01-11 01:01:24,282 | INFO     | sizes: {0: 2284398, 1: 2284597, 12: 2284597, 23: 2284625, 33: 2284653, 44: 2284709, 55: 2284865, 66: 2284893, 76: 2284921, 87: 2284977, 98: 2285005, 108: 2285313, 
[2026-01-11 02:02:26] 2026-01-11 01:01:24,282 | INFO     | --------------------------------------------------
[2026-01-11 02:02:26] 2026-01-11 01:01:24,282 | INFO     | 
[2026-01-11 02:02:26] 2026-01-11 01:01:24,282 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-01-11 02:02:26] 2026-01-11 01:01:24,594 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 02:02:26] 2026-01-11 01:01:24,595 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 02:02:26] 2026-01-11 01:01:24,595 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 02:02:26] 2026-01-11 01:01:24,595 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 02:02:26] 2026-01-11 01:01:24,595 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 02:02:26] 2026-01-11 01:01:24,595 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 02:02:26] 2026-01-11 01:01:24,595 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 02:02:26] 2026-01-11 01:01:24,595 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 02:02:26] 2026-01-11 01:01:24,595 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 02:02:26] 2026-01-11 01:01:24,596 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 02:02:26] 2026-01-11 01:01:24,596 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 02:02:26] 2026-01-11 01:01:24,596 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 02:02:26] 2026-01-11 01:01:24,596 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 02:02:26] 2026-01-11 01:01:24,596 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 02:02:26] 2026-01-11 01:01:24,596 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 02:02:26] 2026-01-11 01:01:24,596 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 02:02:26] 2026-01-11 01:01:24,596 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 02:02:26] 2026-01-11 01:01:24,596 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 02:02:26] 2026-01-11 01:01:24,597 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 02:02:26] 2026-01-11 01:01:24,597 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 02:02:26] 2026-01-11 01:01:24,597 | INFO     | job 6965803282 has completed (purged errors)
[2026-01-11 02:02:26] 2026-01-11 01:01:24,597 | INFO     | overall cleanup function is called
[2026-01-11 02:02:26] 2026-01-11 01:01:25,615 | INFO     | --- collectZombieJob: --- 10, [4139]
[2026-01-11 02:02:26] 2026-01-11 01:01:25,616 | INFO     | zombie collector waiting for pid 4139
[2026-01-11 02:02:26] 2026-01-11 01:01:25,616 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 02:02:26] 2026-01-11 01:01:25,616 | INFO     | collected zombie processes
[2026-01-11 02:02:26] 2026-01-11 01:01:25,616 | INFO     | will attempt to kill all subprocesses of pid=4139
[2026-01-11 02:02:26] 2026-01-11 01:01:25,711 | INFO     | process IDs to be killed: [4139] (in reverse order)
[2026-01-11 02:02:26] 2026-01-11 01:01:26,761 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 02:02:26] 2026-01-11 01:01:26,761 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 02:02:26] 2026-01-11 01:01:26,764 | INFO     | did not find any defunct processes belonging to 4139
[2026-01-11 02:02:26] 2026-01-11 01:01:26,765 | INFO     | did not find any defunct processes belonging to 4139
[2026-01-11 02:02:26] 2026-01-11 01:01:26,766 | INFO     | ready for new job
[2026-01-11 02:02:26] 2026-01-11 01:01:26,766 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 02:02:26] 2026-01-11 01:01:26,770 | INFO     | ***************************************
[2026-01-11 02:02:26] 2026-01-11 01:01:26,771 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 02:02:26] 2026-01-11 01:01:26,771 | INFO     | ***************************************
[2026-01-11 02:02:26] 2026-01-11 01:01:26,771 | INFO     | 
[2026-01-11 02:02:26] 2026-01-11 01:01:26,772 | INFO     | pilot is running in a VM
[2026-01-11 02:02:26] 2026-01-11 01:01:26,772 | INFO     | architecture information:
[2026-01-11 02:02:26] 2026-01-11 01:01:26,795 | INFO     | executing command: cat /etc/os-release
[2026-01-11 02:02:26] 2026-01-11 01:01:27,019 | INFO     | cat /etc/os-release:
[2026-01-11 02:02:26] NAME="CentOS Linux"
[2026-01-11 02:02:26] VERSION="7 (Core)"
[2026-01-11 02:02:26] ID="centos"
[2026-01-11 02:02:26] ID_LIKE="rhel fedora"
[2026-01-11 02:02:26] VERSION_ID="7"
[2026-01-11 02:02:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 02:02:26] ANSI_COLOR="0;31"
[2026-01-11 02:02:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 02:02:26] HOME_URL="https://www.centos.org/"
[2026-01-11 02:02:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 02:02:26] 
[2026-01-11 02:02:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 02:02:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 02:02:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 02:02:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 02:02:26] 
[2026-01-11 02:02:26] 2026-01-11 01:01:27,019 | INFO     | ***************************************
[2026-01-11 02:02:26] 2026-01-11 01:01:27,523 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-01-11 02:02:26] 2026-01-11 01:01:27,800 | INFO     | sufficient remaining disk space (497371054080 B)
[2026-01-11 02:02:26] 2026-01-11 01:01:27,800 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 02:02:26] 2026-01-11 01:01:27,801 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 02:02:26] 2026-01-11 01:01:27,801 | INFO     | update_server=False
[2026-01-11 02:02:26] 2026-01-11 01:01:27,801 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 02:02:26] 2026-01-11 01:01:27,803 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 02:02:26] 2026-01-11 01:01:28,019 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 02:02:26] 2026-01-11 01:01:28,020 | INFO     | aborting loop
[2026-01-11 02:02:26] 2026-01-11 01:01:28,466 | INFO     | all job control threads have been joined
[2026-01-11 02:02:26] 2026-01-11 01:01:28,619 | INFO     | all payload control threads have been joined
[2026-01-11 02:02:26] 2026-01-11 01:01:28,807 | INFO     | [job] retrieve thread has finished
[2026-01-11 02:02:26] 2026-01-11 01:01:28,810 | INFO     | all data control threads have been joined
[2026-01-11 02:02:26] 2026-01-11 01:01:28,856 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 02:02:26] 2026-01-11 01:01:28,906 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 02:02:26] 2026-01-11 01:01:29,002 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 02:02:26] 2026-01-11 01:01:29,026 | INFO     | [job] job monitor thread has finished
[2026-01-11 02:02:26] 2026-01-11 01:01:29,173 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 02:02:26] 2026-01-11 01:01:29,173 | INFO     | [payload] failed_post thread has finished
[2026-01-11 02:02:26] 2026-01-11 01:01:29,252 | INFO     | [payload] validate_post thread has finished
[2026-01-11 02:02:26] 2026-01-11 01:01:29,462 | INFO     | [data] copytool_in thread has finished
[2026-01-11 02:02:26] 2026-01-11 01:01:29,472 | INFO     | [job] control thread has finished
[2026-01-11 02:02:26] 2026-01-11 01:01:29,625 | INFO     | [payload] control thread has finished
[2026-01-11 02:02:26] 2026-01-11 01:01:29,810 | INFO     | [data] copytool_out thread has finished
[2026-01-11 02:02:26] 2026-01-11 01:01:29,815 | INFO     | [data] control thread has finished
[2026-01-11 02:02:26] 2026-01-11 01:01:29,862 | INFO     | [job] queue monitor thread has finished
[2026-01-11 02:02:26] 2026-01-11 01:01:30,050 | INFO     | [job] validate thread has finished
[2026-01-11 02:02:26] 2026-01-11 01:01:30,893 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 02:02:26] 2026-01-11 01:01:34,902 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 02:02:26] 2026-01-11 01:01:38,115 | INFO     | job.realtimelogging is not enabled
[2026-01-11 02:02:26] 2026-01-11 01:01:39,121 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 02:02:26] 2026-01-11 01:01:55,846 | INFO     | PID=30077 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-11 02:02:26] 2026-01-11 01:01:55,849 | INFO     | .. there are 2 such processes running
[2026-01-11 02:02:26] 2026-01-11 01:01:55,850 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 02:02:26] 2026-01-11 01:01:55,851 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 02:02:26] 2026-01-11 01:01:55,851 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 02:02:26] 2026-01-11 01:02:17,152 | INFO     | [monitor] cgroup control has ended
[2026-01-11 02:02:26] 2026-01-11 01:02:17,522 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140294239168320)>', '<ExcThread(monitor, started 140293814867712)>']
[2026-01-11 02:02:26] 2026-01-11 01:02:17,982 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 02:02:26] 2026-01-11 01:02:17,983 | INFO     | [monitor] control thread has ended
[2026-01-11 02:02:26] 2026-01-11 01:02:22,548 | INFO     | all workflow threads have been joined
[2026-01-11 02:02:26] 2026-01-11 01:02:22,549 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 02:02:26] 2026-01-11 01:02:22,549 | INFO     | traces error code: 0
[2026-01-11 02:02:26] 2026-01-11 01:02:22,549 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 02:02:26] 2026-01-11 01:02:22,920 [wrapper] ==== pilot stdout END ====
[2026-01-11 02:02:26] 2026-01-11 01:02:23,032 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 02:02:26] 2026-01-11 01:02:23,118 [wrapper] pilotpid: 30077
[2026-01-11 02:02:26] 2026-01-11 01:02:23,189 [wrapper] Pilot exit status: 0
[2026-01-11 02:02:26] 2026-01-11 01:02:23,676 [wrapper] pandaids: 6965803282
[2026-01-11 02:02:26] 2026-01-11 01:02:24,730 [wrapper] cleanup supervisor_pilot  2114 30078
[2026-01-11 02:02:26] 2026-01-11 01:02:24,791 [wrapper] Test setup, not cleaning
[2026-01-11 02:02:26] 2026-01-11 01:02:24,808 [wrapper] apfmon messages muted
[2026-01-11 02:02:26] 2026-01-11 01:02:24,961 [wrapper] ==== wrapper stdout END ====
[2026-01-11 02:02:26] 2026-01-11 01:02:25,068 [wrapper] ==== wrapper stderr END ====
[2026-01-11 02:02:26]  *** Error codes and diagnostics ***
[2026-01-11 02:02:26]     "exeErrorCode": 0,
[2026-01-11 02:02:26]     "exeErrorDiag": "",
[2026-01-11 02:02:26]     "pilotErrorCode": 0,
[2026-01-11 02:02:26]     "pilotErrorDiag": "",
[2026-01-11 02:02:26]  *** Listing of results directory ***
[2026-01-11 02:02:26] total 434728
[2026-01-11 02:02:26] -rw-r--r--. 1 boinc boinc    579449 Jan 11 00:00 pilot3.tar.gz
[2026-01-11 02:02:26] -rw-r--r--. 1 boinc boinc      5112 Jan 11 00:03 queuedata.json
[2026-01-11 02:02:26] -rwx------. 1 boinc boinc     36322 Jan 11 00:04 runpilot2-wrapper.sh
[2026-01-11 02:02:26] -rw-r--r--. 1 boinc boinc       100 Jan 11 00:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 02:02:26] -rwxr-xr-x. 1 boinc boinc      7986 Jan 11 00:10 run_atlas
[2026-01-11 02:02:26] -rw-r--r--. 1 boinc boinc       105 Jan 11 00:10 job.xml
[2026-01-11 02:02:26] -rw-r--r--. 2 boinc boinc 392755774 Jan 11 00:10 EVNT.47962006._000073.pool.root.1
[2026-01-11 02:02:26] -rw-r--r--. 1 boinc boinc      6391 Jan 11 00:10 init_data.xml
[2026-01-11 02:02:26] -rw-r--r--. 2 boinc boinc     15847 Jan 11 00:10 start_atlas.sh
[2026-01-11 02:02:26] drwxrwx--x. 2 boinc boinc        68 Jan 11 00:10 shared
[2026-01-11 02:02:26] -rw-r--r--. 2 boinc boinc    592620 Jan 11 00:10 input.tar.gz
[2026-01-11 02:02:26] -rw-r--r--. 1 boinc boinc         0 Jan 11 00:10 boinc_lockfile
[2026-01-11 02:02:26] -rw-r--r--. 1 boinc boinc      2890 Jan 11 00:10 pandaJob.out
[2026-01-11 02:02:26] -rw-------. 1 boinc boinc    989548 Jan 11 00:14 agis_schedconf.cvmfs.json
[2026-01-11 02:02:26] -rw-------. 1 boinc boinc   1516240 Jan 11 00:15 agis_ddmendpoints.agis.ALL.json
[2026-01-11 02:02:26] drwx------. 5 boinc boinc      4096 Jan 11 00:15 pilot3
[2026-01-11 02:02:26] -rw-r--r--. 1 boinc boinc       530 Jan 11 01:35 boinc_task_state.xml
[2026-01-11 02:02:26] -rw-------. 1 boinc boinc  44243195 Jan 11 01:58 HITS.47962010._002734.pool.root.1
[2026-01-11 02:02:26] -rw-------. 1 boinc boinc      1023 Jan 11 01:59 memory_monitor_summary.json
[2026-01-11 02:02:26] -rw-------. 1 boinc boinc   1237054 Jan 11 01:59 log.47962010._002734.job.log.tgz.1
[2026-01-11 02:02:26] -rw-------. 1 boinc boinc      8580 Jan 11 02:01 heartbeat.json
[2026-01-11 02:02:26] -rw-r--r--. 1 boinc boinc      8192 Jan 11 02:01 boinc_mmap_file
[2026-01-11 02:02:26] -rw-r--r--. 1 boinc boinc        27 Jan 11 02:01 wrapper_checkpoint.txt
[2026-01-11 02:02:26] -rw-------. 1 boinc boinc        95 Jan 11 02:01 pilot_heartbeat.json
[2026-01-11 02:02:26] -rw-------. 1 boinc boinc      4956 Jan 11 02:02 pilotlog.txt
[2026-01-11 02:02:26] -rw-------. 1 boinc boinc    890122 Jan 11 02:02 log.47962010._002734.job.log.1
[2026-01-11 02:02:26] -rw-------. 1 boinc boinc       353 Jan 11 02:02 output.list
[2026-01-11 02:02:26] -rw-r--r--. 1 boinc boinc       620 Jan 11 02:02 runtime_log
[2026-01-11 02:02:26] -rw-------. 1 boinc boinc   2150400 Jan 11 02:02 result.tar.gz
[2026-01-11 02:02:26] -rw-r--r--. 1 boinc boinc      8816 Jan 11 02:02 runtime_log.err
[2026-01-11 02:02:26] -rw-------. 1 boinc boinc       654 Jan 11 02:02 FhjNDm1Bxy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0vmKDmQNzYam.diag
[2026-01-11 02:02:26] -rw-r--r--. 1 boinc boinc     22147 Jan 11 02:02 stderr.txt
[2026-01-11 02:02:26] HITS file was successfully produced:
[2026-01-11 02:02:26] -rw-------. 1 boinc boinc 44243195 Jan 11 01:58 shared/HITS.pool.root.1
[2026-01-11 02:02:26]  *** Contents of shared directory: ***
[2026-01-11 02:02:26] total 429456
[2026-01-11 02:02:26] -rw-r--r--. 2 boinc boinc 392755774 Jan 11 00:10 ATLAS.root_0
[2026-01-11 02:02:26] -rw-r--r--. 2 boinc boinc     15847 Jan 11 00:10 start_atlas.sh
[2026-01-11 02:02:26] -rw-r--r--. 2 boinc boinc    592620 Jan 11 00:10 input.tar.gz
[2026-01-11 02:02:26] -rw-------. 1 boinc boinc  44243195 Jan 11 01:58 HITS.pool.root.1
[2026-01-11 02:02:26] -rw-------. 1 boinc boinc   2150400 Jan 11 02:02 result.tar.gz
02:02:28 (26043): run_atlas exited; CPU time 18660.452739
02:02:28 (26043): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN