Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:10:38 (12278): wrapper (7.7.26015): starting
18:10:38 (12278): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 18:10:38] Arguments: --nthreads 8
[2026-01-10 18:10:38] Threads: 8
[2026-01-10 18:10:38] Checking for CVMFS
[2026-01-10 18:10:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 18:10:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 18:10:38] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 18:10:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 18:10:39] 2.11.2.0 1632 31588 103184 154996 3 4 14864409 18432001 18 130560 0 8158486 99.986 1000900 43781 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 18:10:39] CVMFS is ok
[2026-01-10 18:10:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 18:10:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 18:10:39] Further information can be found at the LHC@home message board.
[2026-01-10 18:10:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 18:10:39] Checking for apptainer binary...
[2026-01-10 18:10:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 18:10:39] Running /usr/bin/apptainer --version
[2026-01-10 18:10:39] apptainer version 1.3.2-1.el7
[2026-01-10 18:10:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 18:10:39] c-206-1.aglt2.org
[2026-01-10 18:10:39] apptainer works
[2026-01-10 18:10:39] Set ATHENA_PROC_NUMBER=8
[2026-01-10 18:10:39] Set ATHENA_CORE_NUMBER=8
[2026-01-10 18:10:39] Starting ATLAS job with PandaID=6965803285
[2026-01-10 18:10:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 19:09:03]  *** The last 200 lines of the pilot log: ***
[2026-01-10 19:09:03]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-10 19:09:03]  replicas=None
[2026-01-10 19:09:03]  scope=mc16_13TeV
[2026-01-10 19:09:03]  status=None
[2026-01-10 19:09:03]  status_code=0
[2026-01-10 19:09:03]  storage_token=
[2026-01-10 19:09:03]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6965803285/log.47962010._002737.job.log.tgz.1
[2026-01-10 19:09:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/ae/0f/log.47962010._002737.job.log.tgz.1
[2026-01-10 19:09:03]  workdir=None
[2026-01-10 19:09:03] ]
[2026-01-10 19:09:03] 2026-01-11 00:07:58,694 | INFO     | transferring file log.47962010._002737.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6965803285/log.47962010._002737.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-10 19:09:03] 2026-01-11 00:07:58,694 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6965803285/log.47962010._002737.job.log.tgz.1 /tmp/boinchome/slots/1/log.47962010._002737.job
[2026-01-10 19:09:03] 2026-01-11 00:07:58,716 | INFO     | adding to output.list: log.47962010._002737.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/ae/0f/log.47962010._002737.job.log.tgz.
[2026-01-10 19:09:03] 2026-01-11 00:07:58,717 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 19:09:03] 2026-01-11 00:07:58,717 | INFO     | summary of transferred files:
[2026-01-10 19:09:03] 2026-01-11 00:07:58,717 | INFO     |  -- lfn=log.47962010._002737.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 19:09:03] 2026-01-11 00:07:58,717 | INFO     | stage-out finished correctly
[2026-01-10 19:09:03] 2026-01-11 00:07:59,106 | INFO     | monitor loop #262: job 0:6965803285 is in state 'finished'
[2026-01-10 19:09:03] 2026-01-11 00:07:59,107 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 19:09:03] 2026-01-11 00:07:59,975 | INFO     | time since job start (3427s) is within the limit (349056.0s)
[2026-01-10 19:09:03] 2026-01-11 00:08:01,610 | INFO     | monitor loop #263: job 0:6965803285 is in state 'finished'
[2026-01-10 19:09:03] 2026-01-11 00:08:01,610 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 19:09:03] 2026-01-11 00:08:01,980 | INFO     | time since job start (3429s) is within the limit (349056.0s)
[2026-01-10 19:09:03] 2026-01-11 00:08:02,099 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 19:09:03] 2026-01-11 00:08:03,986 | INFO     | time since job start (3431s) is within the limit (349056.0s)
[2026-01-10 19:09:03] 2026-01-11 00:08:04,113 | INFO     | monitor loop #264: job 0:6965803285 is in state 'finished'
[2026-01-10 19:09:03] 2026-01-11 00:08:04,113 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 19:09:03] 2026-01-11 00:08:04,314 | INFO     | job 6965803285 has state=finished
[2026-01-10 19:09:03] 2026-01-11 00:08:04,315 | INFO     | preparing for final server update for job 6965803285 in state='finished'
[2026-01-10 19:09:03] 2026-01-11 00:08:04,315 | INFO     | this job has now completed (state=finished)
[2026-01-10 19:09:03] 2026-01-11 00:08:04,316 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 19:09:03] 2026-01-11 00:08:04,316 | INFO     | log transfer has been attempted: DONE
[2026-01-10 19:09:03] 2026-01-11 00:08:04,316 | INFO     | job 6965803285 has finished - writing final server update
[2026-01-10 19:09:03] 2026-01-11 00:08:04,316 | INFO     | total number of processed events: 50 (read)
[2026-01-10 19:09:03] 2026-01-11 00:08:04,317 | INFO     | executing command: lscpu
[2026-01-10 19:09:03] 2026-01-11 00:08:04,346 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 19:09:03] 2026-01-11 00:08:05,992 | INFO     | time since job start (3433s) is within the limit (349056.0s)
[2026-01-10 19:09:03] 2026-01-11 00:08:06,616 | INFO     | monitor loop #265: job 0:6965803285 is in state 'finished'
[2026-01-10 19:09:03] 2026-01-11 00:08:06,616 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 19:09:03] 2026-01-11 00:08:07,998 | INFO     | time since job start (3435s) is within the limit (349056.0s)
[2026-01-10 19:09:03] 2026-01-11 00:08:08,993 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-10 19:09:03] 2026-01-11 00:08:08,999 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 1656.9583333333333
[2026-01-10 19:09:03] 2026-01-11 00:08:09,003 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6965803285/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 19:09:03] 2026-01-11 00:08:09,004 | INFO     | extracted standard info from prmon json
[2026-01-10 19:09:03] 2026-01-11 00:08:09,004 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 19:09:03] 2026-01-11 00:08:09,004 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 19:09:03] 2026-01-11 00:08:09,006 | INFO     | fitting pss+swap vs Time
[2026-01-10 19:09:03] 2026-01-11 00:08:09,006 | INFO     | sum of square deviations: 36465800.0
[2026-01-10 19:09:03] 2026-01-11 00:08:09,006 | INFO     | sum of deviations: 1618498786.9999998
[2026-01-10 19:09:03] 2026-01-11 00:08:09,006 | INFO     | mean x: 1768088449.0
[2026-01-10 19:09:03] 2026-01-11 00:08:09,006 | INFO     | mean y: 2531142.3673469387
[2026-01-10 19:09:03] 2026-01-11 00:08:09,006 | INFO     | intersect: -78472341478.42285
[2026-01-10 19:09:03] 2026-01-11 00:08:09,007 | INFO     | chi2: 0.15721894808289727
[2026-01-10 19:09:03] 2026-01-11 00:08:09,007 | INFO     | current memory leak: 44.38 B/s (using 49 data points, chi2=0.16)
[2026-01-10 19:09:03] 2026-01-11 00:08:09,007 | INFO     | could have reported an average CPU frequency of 1864 MHz (5 samples)
[2026-01-10 19:09:03] 2026-01-11 00:08:09,007 | INFO     | ..............................
[2026-01-10 19:09:03] 2026-01-11 00:08:09,007 | INFO     | . Timing measurements:
[2026-01-10 19:09:03] 2026-01-11 00:08:09,007 | INFO     | . get job = 0 s
[2026-01-10 19:09:03] 2026-01-11 00:08:09,007 | INFO     | . initial setup = 2 s
[2026-01-10 19:09:03] 2026-01-11 00:08:09,008 | INFO     | . payload setup = 7 s
[2026-01-10 19:09:03] 2026-01-11 00:08:09,008 | INFO     | . stage-in = 0 s
[2026-01-10 19:09:03] 2026-01-11 00:08:09,008 | INFO     | . payload execution = 3397 s
[2026-01-10 19:09:03] 2026-01-11 00:08:09,008 | INFO     | . stage-out = 0 s
[2026-01-10 19:09:03] 2026-01-11 00:08:09,008 | INFO     | . log creation = 0 s
[2026-01-10 19:09:03] 2026-01-11 00:08:09,008 | INFO     | ..............................
[2026-01-10 19:09:03] 2026-01-11 00:08:09,088 | INFO     | 
[2026-01-10 19:09:03] 2026-01-11 00:08:09,089 | INFO     | job summary report
[2026-01-10 19:09:03] 2026-01-11 00:08:09,089 | INFO     | --------------------------------------------------
[2026-01-10 19:09:03] 2026-01-11 00:08:09,089 | INFO     | PanDA job id: 6965803285
[2026-01-10 19:09:03] 2026-01-11 00:08:09,089 | INFO     | task id: 47962010
[2026-01-10 19:09:03] 2026-01-11 00:08:09,089 | INFO     | errors: (none)
[2026-01-10 19:09:03] 2026-01-11 00:08:09,089 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 19:09:03] 2026-01-11 00:08:09,090 | INFO     | pilot state: finished 
[2026-01-10 19:09:03] 2026-01-11 00:08:09,090 | INFO     | transexitcode: 0
[2026-01-10 19:09:03] 2026-01-11 00:08:09,090 | INFO     | exeerrorcode: 0
[2026-01-10 19:09:03] 2026-01-11 00:08:09,090 | INFO     | exeerrordiag: 
[2026-01-10 19:09:03] 2026-01-11 00:08:09,090 | INFO     | exitcode: 0
[2026-01-10 19:09:03] 2026-01-11 00:08:09,090 | INFO     | exitmsg: OK
[2026-01-10 19:09:03] 2026-01-11 00:08:09,091 | INFO     | cpuconsumptiontime: 24339 s
[2026-01-10 19:09:03] 2026-01-11 00:08:09,091 | INFO     | nevents: 50
[2026-01-10 19:09:03] 2026-01-11 00:08:09,091 | INFO     | neventsw: 0
[2026-01-10 19:09:03] 2026-01-11 00:08:09,091 | INFO     | pid: 32236
[2026-01-10 19:09:03] 2026-01-11 00:08:09,091 | INFO     | pgrp: 32236
[2026-01-10 19:09:03] 2026-01-11 00:08:09,091 | INFO     | corecount: 8
[2026-01-10 19:09:03] 2026-01-11 00:08:09,092 | INFO     | event service: False
[2026-01-10 19:09:03] 2026-01-11 00:08:09,092 | INFO     | sizes: {0: 2284569, 5: 2284831, 11: 2284887, 3409: 2311274, 3411: 2320268, 3414: 2320324, 3421: 2320730}
[2026-01-10 19:09:03] 2026-01-11 00:08:09,092 | INFO     | --------------------------------------------------
[2026-01-10 19:09:03] 2026-01-11 00:08:09,092 | INFO     | 
[2026-01-10 19:09:03] 2026-01-11 00:08:09,092 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-10 19:09:03] 2026-01-11 00:08:09,115 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 19:09:03] 2026-01-11 00:08:09,115 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 19:09:03] 2026-01-11 00:08:09,116 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 19:09:03] 2026-01-11 00:08:09,116 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 19:09:03] 2026-01-11 00:08:09,116 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 19:09:03] 2026-01-11 00:08:09,116 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 19:09:03] 2026-01-11 00:08:09,116 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 19:09:03] 2026-01-11 00:08:09,116 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 19:09:03] 2026-01-11 00:08:09,116 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 19:09:03] 2026-01-11 00:08:09,117 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 19:09:03] 2026-01-11 00:08:09,117 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 19:09:03] 2026-01-11 00:08:09,117 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 19:09:03] 2026-01-11 00:08:09,117 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 19:09:03] 2026-01-11 00:08:09,117 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 19:09:03] 2026-01-11 00:08:09,117 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 19:09:03] 2026-01-11 00:08:09,118 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 19:09:03] 2026-01-11 00:08:09,118 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 19:09:03] 2026-01-11 00:08:09,118 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 19:09:03] 2026-01-11 00:08:09,118 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 19:09:03] 2026-01-11 00:08:09,118 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 19:09:03] 2026-01-11 00:08:09,118 | INFO     | job 6965803285 has completed (purged errors)
[2026-01-10 19:09:03] 2026-01-11 00:08:09,119 | INFO     | overall cleanup function is called
[2026-01-10 19:09:03] 2026-01-11 00:08:10,132 | INFO     | --- collectZombieJob: --- 10, [32236]
[2026-01-10 19:09:03] 2026-01-11 00:08:10,132 | INFO     | zombie collector waiting for pid 32236
[2026-01-10 19:09:03] 2026-01-11 00:08:10,132 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 19:09:03] 2026-01-11 00:08:10,132 | INFO     | collected zombie processes
[2026-01-10 19:09:03] 2026-01-11 00:08:10,133 | INFO     | will attempt to kill all subprocesses of pid=32236
[2026-01-10 19:09:03] 2026-01-11 00:08:10,240 | INFO     | process IDs to be killed: [32236] (in reverse order)
[2026-01-10 19:09:03] 2026-01-11 00:08:10,295 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 19:09:03] 2026-01-11 00:08:10,295 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 19:09:03] 2026-01-11 00:08:10,300 | INFO     | did not find any defunct processes belonging to 32236
[2026-01-10 19:09:03] 2026-01-11 00:08:10,303 | INFO     | did not find any defunct processes belonging to 32236
[2026-01-10 19:09:03] 2026-01-11 00:08:10,303 | INFO     | ready for new job
[2026-01-10 19:09:03] 2026-01-11 00:08:10,304 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 19:09:03] 2026-01-11 00:08:10,305 | INFO     | ***************************************
[2026-01-10 19:09:03] 2026-01-11 00:08:10,305 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 19:09:03] 2026-01-11 00:08:10,305 | INFO     | ***************************************
[2026-01-10 19:09:03] 2026-01-11 00:08:10,305 | INFO     | 
[2026-01-10 19:09:03] 2026-01-11 00:08:10,306 | INFO     | architecture information:
[2026-01-10 19:09:03] 2026-01-11 00:08:10,307 | INFO     | executing command: cat /etc/os-release
[2026-01-10 19:09:03] 2026-01-11 00:08:10,322 | INFO     | cat /etc/os-release:
[2026-01-10 19:09:03] NAME="CentOS Linux"
[2026-01-10 19:09:03] VERSION="7 (Core)"
[2026-01-10 19:09:03] ID="centos"
[2026-01-10 19:09:03] ID_LIKE="rhel fedora"
[2026-01-10 19:09:03] VERSION_ID="7"
[2026-01-10 19:09:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 19:09:03] ANSI_COLOR="0;31"
[2026-01-10 19:09:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 19:09:03] HOME_URL="https://www.centos.org/"
[2026-01-10 19:09:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 19:09:03] 
[2026-01-10 19:09:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 19:09:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 19:09:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 19:09:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 19:09:03] 
[2026-01-10 19:09:03] 2026-01-11 00:08:10,323 | INFO     | ***************************************
[2026-01-10 19:09:03] 2026-01-11 00:08:10,826 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-10 19:09:03] 2026-01-11 00:08:10,843 | INFO     | sufficient remaining disk space (28454158336 B)
[2026-01-10 19:09:03] 2026-01-11 00:08:10,843 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 19:09:03] 2026-01-11 00:08:10,843 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 19:09:03] 2026-01-11 00:08:10,844 | INFO     | update_server=False
[2026-01-10 19:09:03] 2026-01-11 00:08:10,844 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 19:09:03] 2026-01-11 00:08:10,844 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 19:09:03] 2026-01-11 00:08:10,844 | INFO     | aborting loop
[2026-01-10 19:09:03] 2026-01-11 00:08:10,845 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 19:09:03] 2026-01-11 00:08:10,997 | INFO     | all data control threads have been joined
[2026-01-10 19:09:03] 2026-01-11 00:08:11,401 | INFO     | all job control threads have been joined
[2026-01-10 19:09:03] 2026-01-11 00:08:11,817 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 19:09:03] 2026-01-11 00:08:11,845 | INFO     | [job] queue monitor thread has finished
[2026-01-10 19:09:03] 2026-01-11 00:08:11,849 | INFO     | [job] retrieve thread has finished
[2026-01-10 19:09:03] 2026-01-11 00:08:11,850 | INFO     | [job] job monitor thread has finished
[2026-01-10 19:09:03] 2026-01-11 00:08:12,001 | INFO     | [data] control thread has finished
[2026-01-10 19:09:03] 2026-01-11 00:08:12,009 | INFO     | all payload control threads have been joined
[2026-01-10 19:09:03] 2026-01-11 00:08:12,217 | INFO     | [payload] validate_post thread has finished
[2026-01-10 19:09:03] 2026-01-11 00:08:12,352 | INFO     | [job] validate thread has finished
[2026-01-10 19:09:03] 2026-01-11 00:08:12,402 | INFO     | [job] control thread has finished
[2026-01-10 19:09:03] 2026-01-11 00:08:12,482 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 19:09:03] 2026-01-11 00:08:12,685 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 19:09:03] 2026-01-11 00:08:12,764 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 19:09:03] 2026-01-11 00:08:12,773 | INFO     | [data] copytool_in thread has finished
[2026-01-10 19:09:03] 2026-01-11 00:08:12,783 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 19:09:03] 2026-01-11 00:08:12,854 | INFO     | [payload] failed_post thread has finished
[2026-01-10 19:09:03] 2026-01-11 00:08:13,014 | INFO     | [payload] control thread has finished
[2026-01-10 19:09:03] 2026-01-11 00:08:13,822 | INFO     | [data] copytool_out thread has finished
[2026-01-10 19:09:03] 2026-01-11 00:08:16,691 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 19:09:03] 2026-01-11 00:08:21,533 | INFO     | job.realtimelogging is not enabled
[2026-01-10 19:09:03] 2026-01-11 00:08:22,539 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 19:09:03] 2026-01-11 00:08:41,209 | INFO     | PID=19290 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 19:09:03] 2026-01-11 00:08:41,210 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 19:09:03] 2026-01-11 00:08:41,210 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 19:09:03] 2026-01-11 00:08:41,210 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 19:09:03] 2026-01-11 00:08:56,473 | INFO     | [monitor] cgroup control has ended
[2026-01-10 19:09:03] 2026-01-11 00:08:58,409 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139783756408640)>', '<ExcThread(monitor, started 139783166736128)>']
[2026-01-10 19:09:03] 2026-01-11 00:08:59,292 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 19:09:03] 2026-01-11 00:08:59,292 | INFO     | [monitor] control thread has ended
[2026-01-10 19:09:03] 2026-01-11 00:09:03,412 | INFO     | all workflow threads have been joined
[2026-01-10 19:09:03] 2026-01-11 00:09:03,412 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 19:09:03] 2026-01-11 00:09:03,413 | INFO     | traces error code: 0
[2026-01-10 19:09:03] 2026-01-11 00:09:03,413 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 19:09:03] 2026-01-11 00:09:03,511 [wrapper] ==== pilot stdout END ====
[2026-01-10 19:09:03] 2026-01-11 00:09:03,514 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 19:09:03] 2026-01-11 00:09:03,518 [wrapper] pilotpid: 19290
[2026-01-10 19:09:03] 2026-01-11 00:09:03,522 [wrapper] Pilot exit status: 0
[2026-01-10 19:09:03] 2026-01-11 00:09:03,533 [wrapper] pandaids: 6965803285
[2026-01-10 19:09:03] 2026-01-11 00:09:03,578 [wrapper] cleanup supervisor_pilot 26398 19291
[2026-01-10 19:09:03] 2026-01-11 00:09:03,582 [wrapper] Test setup, not cleaning
[2026-01-10 19:09:03] 2026-01-11 00:09:03,586 [wrapper] apfmon messages muted
[2026-01-10 19:09:03] 2026-01-11 00:09:03,590 [wrapper] ==== wrapper stdout END ====
[2026-01-10 19:09:03] 2026-01-11 00:09:03,594 [wrapper] ==== wrapper stderr END ====
[2026-01-10 19:09:03]  *** Error codes and diagnostics ***
[2026-01-10 19:09:03]     "exeErrorCode": 0,
[2026-01-10 19:09:03]     "exeErrorDiag": "",
[2026-01-10 19:09:03]     "pilotErrorCode": 0,
[2026-01-10 19:09:03]     "pilotErrorDiag": "",
[2026-01-10 19:09:03]  *** Listing of results directory ***
[2026-01-10 19:09:03] total 436420
[2026-01-10 19:09:03] -rw-r--r-- 1 boincer umatlas    579449 Jan 10 18:00 pilot3.tar.gz
[2026-01-10 19:09:03] -rwx------ 1 boincer umatlas     36322 Jan 10 18:05 runpilot2-wrapper.sh
[2026-01-10 19:09:03] -rw-r--r-- 1 boincer umatlas      5112 Jan 10 18:05 queuedata.json
[2026-01-10 19:09:03] -rw-r--r-- 1 boincer umatlas       100 Jan 10 18:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 19:09:03] -rwxr-xr-x 1 boincer umatlas      7986 Jan 10 18:10 run_atlas
[2026-01-10 19:09:03] -rw-r--r-- 1 boincer umatlas       105 Jan 10 18:10 job.xml
[2026-01-10 19:09:03] -rw-r--r-- 2 boincer umatlas 392755774 Jan 10 18:10 EVNT.47962006._000073.pool.root.1
[2026-01-10 19:09:03] -rw-r--r-- 2 boincer umatlas     15847 Jan 10 18:10 start_atlas.sh
[2026-01-10 19:09:03] drwxrwx--x 2 boincer umatlas      4096 Jan 10 18:10 shared
[2026-01-10 19:09:03] -rw-r--r-- 2 boincer umatlas    592613 Jan 10 18:10 input.tar.gz
[2026-01-10 19:09:03] -rw-r--r-- 1 boincer umatlas         0 Jan 10 18:10 boinc_lockfile
[2026-01-10 19:09:03] -rw-r--r-- 1 boincer umatlas      2890 Jan 10 18:10 pandaJob.out
[2026-01-10 19:09:03] -rw------- 1 boincer umatlas        57 Jan 10 18:10 setup.sh.local
[2026-01-10 19:09:03] -rw------- 1 boincer umatlas    989548 Jan 10 18:10 agis_schedconf.cvmfs.json
[2026-01-10 19:09:03] -rw------- 1 boincer umatlas   1516240 Jan 10 18:10 agis_ddmendpoints.agis.ALL.json
[2026-01-10 19:09:03] drwx------ 5 boincer umatlas      4096 Jan 10 18:10 pilot3
[2026-01-10 19:09:03] -rw-r--r-- 1 boincer umatlas       529 Jan 10 19:01 boinc_task_state.xml
[2026-01-10 19:09:03] -rw-r--r-- 1 boincer umatlas      5949 Jan 10 19:03 init_data.xml
[2026-01-10 19:09:03] -rw------- 1 boincer umatlas  46776394 Jan 10 19:07 HITS.47962010._002737.pool.root.1
[2026-01-10 19:09:03] -rw------- 1 boincer umatlas      1056 Jan 10 19:07 memory_monitor_summary.json
[2026-01-10 19:09:03] -rw------- 1 boincer umatlas   1190740 Jan 10 19:07 log.47962010._002737.job.log.tgz.1
[2026-01-10 19:09:03] -rw------- 1 boincer umatlas      8592 Jan 10 19:08 heartbeat.json
[2026-01-10 19:09:03] -rw-r--r-- 1 boincer umatlas        27 Jan 10 19:08 wrapper_checkpoint.txt
[2026-01-10 19:09:03] -rw-r--r-- 1 boincer umatlas      8192 Jan 10 19:08 boinc_mmap_file
[2026-01-10 19:09:03] -rw------- 1 boincer umatlas        95 Jan 10 19:08 pilot_heartbeat.json
[2026-01-10 19:09:03] -rw------- 1 boincer umatlas      4818 Jan 10 19:09 pilotlog.txt
[2026-01-10 19:09:03] -rw------- 1 boincer umatlas    535505 Jan 10 19:09 log.47962010._002737.job.log.1
[2026-01-10 19:09:03] -rw------- 1 boincer umatlas       353 Jan 10 19:09 output.list
[2026-01-10 19:09:03] -rw-r--r-- 1 boincer umatlas       620 Jan 10 19:09 runtime_log
[2026-01-10 19:09:03] -rw------- 1 boincer umatlas   1740800 Jan 10 19:09 result.tar.gz
[2026-01-10 19:09:03] -rw-r--r-- 1 boincer umatlas      9337 Jan 10 19:09 runtime_log.err
[2026-01-10 19:09:03] -rw------- 1 boincer umatlas       658 Jan 10 19:09 FqIKDmJCxy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmRehKDmF6Ovsm.diag
[2026-01-10 19:09:03] -rw-r--r-- 1 boincer umatlas     21949 Jan 10 19:09 stderr.txt
[2026-01-10 19:09:03] HITS file was successfully produced:
[2026-01-10 19:09:03] -rw------- 1 boincer umatlas 46776394 Jan 10 19:07 shared/HITS.pool.root.1
[2026-01-10 19:09:03]  *** Contents of shared directory: ***
[2026-01-10 19:09:03] total 431532
[2026-01-10 19:09:03] -rw-r--r-- 2 boincer umatlas 392755774 Jan 10 18:10 ATLAS.root_0
[2026-01-10 19:09:03] -rw-r--r-- 2 boincer umatlas     15847 Jan 10 18:10 start_atlas.sh
[2026-01-10 19:09:03] -rw-r--r-- 2 boincer umatlas    592613 Jan 10 18:10 input.tar.gz
[2026-01-10 19:09:03] -rw------- 1 boincer umatlas  46776394 Jan 10 19:07 HITS.pool.root.1
[2026-01-10 19:09:03] -rw------- 1 boincer umatlas   1740800 Jan 10 19:09 result.tar.gz
19:09:05 (12278): run_atlas exited; CPU time 24259.303407
19:09:05 (12278): called boinc_finish(0)

</stderr_txt>
]]>

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