Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:36:51 (2683947): wrapper (7.7.26015): starting
18:36:51 (2683947): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 18:36:51] Arguments: --nthreads 8
[2026-01-10 18:36:51] Threads: 8
[2026-01-10 18:36:51] Checking for CVMFS
[2026-01-10 18:36:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 18:36:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 18:36:52] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 18:36:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 18:36:54] 2.13.3.0 10021 23621 170436 154997 1 139 26443013 39288833 9928 16776704 0 10199420 99.482 13235951 37331 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 18:36:54] CVMFS is ok
[2026-01-10 18:36:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 18:36:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 18:36:54] Further information can be found at the LHC@home message board.
[2026-01-10 18:36:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 18:36:54] Checking for apptainer binary...
[2026-01-10 18:36:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 18:36:54] Running /usr/bin/apptainer --version
[2026-01-10 18:36:54] apptainer version 1.4.5-2.el9
[2026-01-10 18:36:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 18:36:56] c-211-4.aglt2.org
[2026-01-10 18:36:56] apptainer works
[2026-01-10 18:36:56] Set ATHENA_PROC_NUMBER=8
[2026-01-10 18:36:56] Set ATHENA_CORE_NUMBER=8
[2026-01-10 18:36:56] Starting ATLAS job with PandaID=6965803345
[2026-01-10 18:36:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 20:20:35]  *** The last 200 lines of the pilot log: ***
[2026-01-10 20:20:35] 2026-01-11 01:19:09,643 | INFO     | this job has now completed (state=finished)
[2026-01-10 20:20:35] 2026-01-11 01:19:09,643 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 20:20:35] 2026-01-11 01:19:09,643 | INFO     | log transfer has been attempted: DONE
[2026-01-10 20:20:35] 2026-01-11 01:19:09,643 | INFO     | job 6965803345 has finished - writing final server update
[2026-01-10 20:20:35] 2026-01-11 01:19:09,644 | INFO     | total number of processed events: 50 (read)
[2026-01-10 20:20:35] 2026-01-11 01:19:09,677 | INFO     | executing command: lscpu
[2026-01-10 20:20:35] 2026-01-11 01:19:09,782 | INFO     | time since job start (6052s) is within the limit (349056.0s)
[2026-01-10 20:20:35] 2026-01-11 01:19:09,942 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 20:20:35] 2026-01-11 01:19:11,413 | INFO     | monitor loop #442: job 0:6965803345 is in state 'finished'
[2026-01-10 20:20:35] 2026-01-11 01:19:11,413 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:20:35] 2026-01-11 01:19:11,797 | INFO     | time since job start (6054s) is within the limit (349056.0s)
[2026-01-10 20:20:35] 2026-01-11 01:19:13,804 | INFO     | time since job start (6056s) is within the limit (349056.0s)
[2026-01-10 20:20:35] 2026-01-11 01:19:13,918 | INFO     | monitor loop #443: job 0:6965803345 is in state 'finished'
[2026-01-10 20:20:35] 2026-01-11 01:19:13,918 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:20:35] 2026-01-11 01:19:15,811 | INFO     | time since job start (6058s) is within the limit (349056.0s)
[2026-01-10 20:20:35] 2026-01-11 01:19:16,425 | INFO     | monitor loop #444: job 0:6965803345 is in state 'finished'
[2026-01-10 20:20:35] 2026-01-11 01:19:16,425 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:20:35] 2026-01-11 01:19:17,819 | INFO     | time since job start (6060s) is within the limit (349056.0s)
[2026-01-10 20:20:35] 2026-01-11 01:19:18,935 | INFO     | monitor loop #445: job 0:6965803345 is in state 'finished'
[2026-01-10 20:20:35] 2026-01-11 01:19:18,935 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:20:35] 2026-01-11 01:19:19,826 | INFO     | time since job start (6062s) is within the limit (349056.0s)
[2026-01-10 20:20:35] 2026-01-11 01:19:21,441 | INFO     | monitor loop #446: job 0:6965803345 is in state 'finished'
[2026-01-10 20:20:35] 2026-01-11 01:19:21,441 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:20:35] 2026-01-11 01:19:21,833 | INFO     | time since job start (6064s) is within the limit (349056.0s)
[2026-01-10 20:20:35] 2026-01-11 01:19:23,841 | INFO     | time since job start (6066s) is within the limit (349056.0s)
[2026-01-10 20:20:35] 2026-01-11 01:19:23,946 | INFO     | monitor loop #447: job 0:6965803345 is in state 'finished'
[2026-01-10 20:20:35] 2026-01-11 01:19:23,946 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:20:35] 2026-01-11 01:19:25,876 | INFO     | time since job start (6068s) is within the limit (349056.0s)
[2026-01-10 20:20:35] 2026-01-11 01:19:26,451 | INFO     | monitor loop #448: job 0:6965803345 is in state 'finished'
[2026-01-10 20:20:35] 2026-01-11 01:19:26,451 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:20:35] 2026-01-11 01:19:29,008 | INFO     | PID=2688366 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 20:20:35] 2026-01-11 01:19:29,022 | INFO     | .. there are 7 such processes running
[2026-01-10 20:20:35] 2026-01-11 01:19:29,014 | INFO     | monitor loop #449: job 0:6965803345 is in state 'finished'
[2026-01-10 20:20:35] 2026-01-11 01:19:29,022 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:20:35] 2026-01-11 01:19:30,023 | INFO     | time since job start (6073s) is within the limit (349056.0s)
[2026-01-10 20:20:35] 2026-01-11 01:19:31,527 | INFO     | monitor loop #450: job 0:6965803345 is in state 'finished'
[2026-01-10 20:20:35] 2026-01-11 01:19:31,527 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 20:20:35] 2026-01-11 01:19:32,048 | INFO     | time since job start (6075s) is within the limit (349056.0s)
[2026-01-10 20:20:35] 2026-01-11 01:19:32,714 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 20:20:35] 2026-01-11 01:19:32,743 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.92215
[2026-01-10 20:20:35] 2026-01-11 01:19:32,759 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6965803345/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 20:20:35] 2026-01-11 01:19:32,760 | INFO     | extracted standard info from prmon json
[2026-01-10 20:20:35] 2026-01-11 01:19:32,760 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 20:20:35] 2026-01-11 01:19:32,760 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 20:20:35] 2026-01-11 01:19:32,763 | INFO     | fitting pss+swap vs Time
[2026-01-10 20:20:35] 2026-01-11 01:19:32,763 | INFO     | sum of square deviations: 225943072.49999985
[2026-01-10 20:20:35] 2026-01-11 01:19:32,764 | INFO     | sum of deviations: -27927736788.333336
[2026-01-10 20:20:35] 2026-01-11 01:19:32,764 | INFO     | mean x: 1768091491.8333333
[2026-01-10 20:20:35] 2026-01-11 01:19:32,764 | INFO     | mean y: 2327997.2444444443
[2026-01-10 20:20:35] 2026-01-11 01:19:32,764 | INFO     | intersect: 218547615778.14325
[2026-01-10 20:20:35] 2026-01-11 01:19:32,765 | INFO     | chi2: 7.771962480190974
[2026-01-10 20:20:35] 2026-01-11 01:19:32,765 | INFO     | current memory leak: -123.61 B/s (using 90 data points, chi2=7.77)
[2026-01-10 20:20:35] 2026-01-11 01:19:32,765 | INFO     | could have reported an average CPU frequency of 2599 MHz (7 samples)
[2026-01-10 20:20:35] 2026-01-11 01:19:32,765 | INFO     | ..............................
[2026-01-10 20:20:35] 2026-01-11 01:19:32,766 | INFO     | . Timing measurements:
[2026-01-10 20:20:35] 2026-01-11 01:19:32,766 | INFO     | . get job = 0 s
[2026-01-10 20:20:35] 2026-01-11 01:19:32,766 | INFO     | . initial setup = 7 s
[2026-01-10 20:20:35] 2026-01-11 01:19:32,766 | INFO     | . payload setup = 60 s
[2026-01-10 20:20:35] 2026-01-11 01:19:32,766 | INFO     | . stage-in = 0 s
[2026-01-10 20:20:35] 2026-01-11 01:19:32,766 | INFO     | . payload execution = 5894 s
[2026-01-10 20:20:35] 2026-01-11 01:19:32,767 | INFO     | . stage-out = 5 s
[2026-01-10 20:20:35] 2026-01-11 01:19:32,767 | INFO     | . log creation = 1 s
[2026-01-10 20:20:35] 2026-01-11 01:19:32,767 | INFO     | ..............................
[2026-01-10 20:20:35] 2026-01-11 01:19:33,347 | INFO     | 
[2026-01-10 20:20:35] 2026-01-11 01:19:33,347 | INFO     | job summary report
[2026-01-10 20:20:35] 2026-01-11 01:19:33,347 | INFO     | --------------------------------------------------
[2026-01-10 20:20:35] 2026-01-11 01:19:33,347 | INFO     | PanDA job id: 6965803345
[2026-01-10 20:20:35] 2026-01-11 01:19:33,347 | INFO     | task id: 47962010
[2026-01-10 20:20:35] 2026-01-11 01:19:33,347 | INFO     | errors: (none)
[2026-01-10 20:20:35] 2026-01-11 01:19:33,348 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 20:20:35] 2026-01-11 01:19:33,348 | INFO     | pilot state: finished 
[2026-01-10 20:20:35] 2026-01-11 01:19:33,348 | INFO     | transexitcode: 0
[2026-01-10 20:20:35] 2026-01-11 01:19:33,348 | INFO     | exeerrorcode: 0
[2026-01-10 20:20:35] 2026-01-11 01:19:33,348 | INFO     | exeerrordiag: 
[2026-01-10 20:20:35] 2026-01-11 01:19:33,348 | INFO     | exitcode: 0
[2026-01-10 20:20:35] 2026-01-11 01:19:33,348 | INFO     | exitmsg: OK
[2026-01-10 20:20:35] 2026-01-11 01:19:33,348 | INFO     | cpuconsumptiontime: 16507 s
[2026-01-10 20:20:35] 2026-01-11 01:19:33,348 | INFO     | nevents: 50
[2026-01-10 20:20:35] 2026-01-11 01:19:33,349 | INFO     | neventsw: 0
[2026-01-10 20:20:35] 2026-01-11 01:19:33,349 | INFO     | pid: 2698386
[2026-01-10 20:20:35] 2026-01-11 01:19:33,349 | INFO     | pgrp: 2698386
[2026-01-10 20:20:35] 2026-01-11 01:19:33,349 | INFO     | corecount: 8
[2026-01-10 20:20:35] 2026-01-11 01:19:33,349 | INFO     | event service: False
[2026-01-10 20:20:35] 2026-01-11 01:19:33,349 | INFO     | sizes: {0: 2284342, 1: 2284426, 2: 2284625, 3: 2284625, 14: 2284653, 25: 2284681, 35: 2284837, 38: 2285127, 46: 2285155, 5960: 2312679, 5962: 2312678, 5969: 232200
[2026-01-10 20:20:35] 2026-01-11 01:19:33,349 | INFO     | --------------------------------------------------
[2026-01-10 20:20:35] 2026-01-11 01:19:33,349 | INFO     | 
[2026-01-10 20:20:35] 2026-01-11 01:19:33,349 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-10 20:20:35] 2026-01-11 01:19:33,544 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 20:20:35] 2026-01-11 01:19:33,544 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 20:20:35] 2026-01-11 01:19:33,545 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 20:20:35] 2026-01-11 01:19:33,545 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 20:20:35] 2026-01-11 01:19:33,545 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 20:20:35] 2026-01-11 01:19:33,545 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 20:20:35] 2026-01-11 01:19:33,545 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 20:20:35] 2026-01-11 01:19:33,545 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 20:20:35] 2026-01-11 01:19:33,545 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 20:20:35] 2026-01-11 01:19:33,545 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 20:20:35] 2026-01-11 01:19:33,545 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 20:20:35] 2026-01-11 01:19:33,545 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 20:20:35] 2026-01-11 01:19:33,546 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 20:20:35] 2026-01-11 01:19:33,546 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 20:20:35] 2026-01-11 01:19:33,546 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 20:20:35] 2026-01-11 01:19:33,546 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 20:20:35] 2026-01-11 01:19:33,546 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 20:20:35] 2026-01-11 01:19:33,546 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 20:20:35] 2026-01-11 01:19:33,546 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 20:20:35] 2026-01-11 01:19:33,546 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 20:20:35] 2026-01-11 01:19:33,546 | INFO     | job 6965803345 has completed (purged errors)
[2026-01-10 20:20:35] 2026-01-11 01:19:33,547 | INFO     | overall cleanup function is called
[2026-01-10 20:20:35] 2026-01-11 01:19:34,562 | INFO     | --- collectZombieJob: --- 10, [2698386]
[2026-01-10 20:20:35] 2026-01-11 01:19:34,562 | INFO     | zombie collector waiting for pid 2698386
[2026-01-10 20:20:35] 2026-01-11 01:19:34,562 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 20:20:35] 2026-01-11 01:19:34,562 | INFO     | collected zombie processes
[2026-01-10 20:20:35] 2026-01-11 01:19:34,562 | INFO     | will attempt to kill all subprocesses of pid=2698386
[2026-01-10 20:20:35] 2026-01-11 01:19:35,371 | INFO     | process IDs to be killed: [2698386] (in reverse order)
[2026-01-10 20:20:35] 2026-01-11 01:19:35,629 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 20:20:35] 2026-01-11 01:19:35,630 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 20:20:35] 2026-01-11 01:19:35,638 | INFO     | did not find any defunct processes belonging to 2698386
[2026-01-10 20:20:35] 2026-01-11 01:19:35,646 | INFO     | did not find any defunct processes belonging to 2698386
[2026-01-10 20:20:35] 2026-01-11 01:19:35,646 | INFO     | ready for new job
[2026-01-10 20:20:35] 2026-01-11 01:19:35,646 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 20:20:35] 2026-01-11 01:19:35,648 | INFO     | ***************************************
[2026-01-10 20:20:35] 2026-01-11 01:19:35,648 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 20:20:35] 2026-01-11 01:19:35,649 | INFO     | ***************************************
[2026-01-10 20:20:35] 2026-01-11 01:19:35,649 | INFO     | 
[2026-01-10 20:20:35] 2026-01-11 01:19:35,650 | INFO     | architecture information:
[2026-01-10 20:20:35] 2026-01-11 01:19:35,715 | INFO     | executing command: cat /etc/os-release
[2026-01-10 20:20:35] 2026-01-11 01:19:35,768 | INFO     | cat /etc/os-release:
[2026-01-10 20:20:35] NAME="CentOS Linux"
[2026-01-10 20:20:35] VERSION="7 (Core)"
[2026-01-10 20:20:35] ID="centos"
[2026-01-10 20:20:35] ID_LIKE="rhel fedora"
[2026-01-10 20:20:35] VERSION_ID="7"
[2026-01-10 20:20:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 20:20:35] ANSI_COLOR="0;31"
[2026-01-10 20:20:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 20:20:35] HOME_URL="https://www.centos.org/"
[2026-01-10 20:20:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 20:20:35] 
[2026-01-10 20:20:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 20:20:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 20:20:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 20:20:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 20:20:35] 
[2026-01-10 20:20:35] 2026-01-11 01:19:35,769 | INFO     | ***************************************
[2026-01-10 20:20:35] 2026-01-11 01:19:36,273 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-10 20:20:35] 2026-01-11 01:19:36,510 | INFO     | sufficient remaining disk space (52306116608 B)
[2026-01-10 20:20:35] 2026-01-11 01:19:36,511 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 20:20:35] 2026-01-11 01:19:36,511 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 20:20:35] 2026-01-11 01:19:36,511 | INFO     | update_server=False
[2026-01-10 20:20:35] 2026-01-11 01:19:36,511 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 20:20:35] 2026-01-11 01:19:36,532 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 20:20:35] 2026-01-11 01:19:36,542 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 20:20:35] 2026-01-11 01:19:36,542 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 20:20:35] 2026-01-11 01:19:36,542 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 20:20:35] 2026-01-11 01:19:36,542 | INFO     | will abort loop
[2026-01-10 20:20:35] 2026-01-11 01:19:36,723 | INFO     | all data control threads have been joined
[2026-01-10 20:20:35] 2026-01-11 01:19:36,824 | INFO     | all job control threads have been joined
[2026-01-10 20:20:35] 2026-01-11 01:19:37,517 | INFO     | [job] retrieve thread has finished
[2026-01-10 20:20:35] 2026-01-11 01:19:37,536 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 20:20:35] 2026-01-11 01:19:37,543 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 20:20:35] 2026-01-11 01:19:37,548 | INFO     | all payload control threads have been joined
[2026-01-10 20:20:35] 2026-01-11 01:19:37,548 | INFO     | [job] job monitor thread has finished
[2026-01-10 20:20:35] 2026-01-11 01:19:37,553 | INFO     | [data] copytool_in thread has finished
[2026-01-10 20:20:35] 2026-01-11 01:19:37,579 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 20:20:35] 2026-01-11 01:19:37,594 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 20:20:35] 2026-01-11 01:19:37,729 | INFO     | [data] control thread has finished
[2026-01-10 20:20:35] 2026-01-11 01:19:37,803 | INFO     | [payload] validate_post thread has finished
[2026-01-10 20:20:35] 2026-01-11 01:19:37,830 | INFO     | [job] control thread has finished
[2026-01-10 20:20:35] 2026-01-11 01:19:37,834 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 20:20:35] 2026-01-11 01:19:38,234 | INFO     | [job] validate thread has finished
[2026-01-10 20:20:35] 2026-01-11 01:19:38,423 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 20:20:35] 2026-01-11 01:19:38,554 | INFO     | [payload] control thread has finished
[2026-01-10 20:20:35] 2026-01-11 01:19:38,638 | INFO     | [data] copytool_out thread has finished
[2026-01-10 20:20:35] 2026-01-11 01:19:38,709 | INFO     | [payload] failed_post thread has finished
[2026-01-10 20:20:35] 2026-01-11 01:19:39,429 | INFO     | [job] queue monitor thread has finished
[2026-01-10 20:20:35] 2026-01-11 01:19:41,860 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 20:20:35] 2026-01-11 01:20:06,266 | INFO     | PID=2688366 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 20:20:35] 2026-01-11 01:20:06,267 | INFO     | .. there are 7 such processes running
[2026-01-10 20:20:35] 2026-01-11 01:20:06,268 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 20:20:35] 2026-01-11 01:20:06,268 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 20:20:35] 2026-01-11 01:20:06,268 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 20:20:35] 2026-01-11 01:20:27,275 | INFO     | [monitor] cgroup control has ended
[2026-01-10 20:20:35] 2026-01-11 01:20:27,413 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139930995976000)>', '<ExcThread(monitor, started 139930722342656)>']
[2026-01-10 20:20:35] 2026-01-11 01:20:27,423 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 20:20:35] 2026-01-11 01:20:27,423 | INFO     | [monitor] control thread has ended
[2026-01-10 20:20:35] 2026-01-11 01:20:32,438 | INFO     | all workflow threads have been joined
[2026-01-10 20:20:35] 2026-01-11 01:20:32,438 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 20:20:35] 2026-01-11 01:20:32,438 | INFO     | traces error code: 0
[2026-01-10 20:20:35] 2026-01-11 01:20:32,439 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 20:20:35] 2026-01-11 01:20:34,363 [wrapper] ==== pilot stdout END ====
[2026-01-10 20:20:35] 2026-01-11 01:20:34,437 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 20:20:35] 2026-01-11 01:20:34,477 [wrapper] pilotpid: 2688366
[2026-01-10 20:20:35] 2026-01-11 01:20:34,515 [wrapper] Pilot exit status: 0
[2026-01-10 20:20:35] 2026-01-11 01:20:34,676 [wrapper] pandaids: 6965803345
[2026-01-10 20:20:35] 2026-01-11 01:20:34,832 [wrapper] cleanup supervisor_pilot 2826613 2688367
[2026-01-10 20:20:35] 2026-01-11 01:20:34,876 [wrapper] Test setup, not cleaning
[2026-01-10 20:20:35] 2026-01-11 01:20:34,909 [wrapper] apfmon messages muted
[2026-01-10 20:20:35] 2026-01-11 01:20:34,963 [wrapper] ==== wrapper stdout END ====
[2026-01-10 20:20:35] 2026-01-11 01:20:34,985 [wrapper] ==== wrapper stderr END ====
[2026-01-10 20:20:35]  *** Error codes and diagnostics ***
[2026-01-10 20:20:35]     "exeErrorCode": 0,
[2026-01-10 20:20:35]     "exeErrorDiag": "",
[2026-01-10 20:20:35]     "pilotErrorCode": 0,
[2026-01-10 20:20:35]     "pilotErrorDiag": "",
[2026-01-10 20:20:35]  *** Listing of results directory ***
[2026-01-10 20:20:35] total 436648
[2026-01-10 20:20:35] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 18:00 pilot3.tar.gz
[2026-01-10 20:20:35] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 18:01 queuedata.json
[2026-01-10 20:20:35] -rwx------. 1 boincer umatlas     36322 Jan 10 18:02 runpilot2-wrapper.sh
[2026-01-10 20:20:35] -rw-r--r--. 1 boincer umatlas       100 Jan 10 18:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 20:20:35] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 18:36 run_atlas
[2026-01-10 20:20:35] -rw-r--r--. 1 boincer umatlas       105 Jan 10 18:36 job.xml
[2026-01-10 20:20:35] -rw-r--r--. 2 boincer umatlas 391833146 Jan 10 18:36 EVNT.47962006._000104.pool.root.1
[2026-01-10 20:20:35] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 18:36 start_atlas.sh
[2026-01-10 20:20:35] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 18:36 shared
[2026-01-10 20:20:35] -rw-r--r--. 2 boincer umatlas    592619 Jan 10 18:36 input.tar.gz
[2026-01-10 20:20:35] -rw-r--r--. 1 boincer umatlas         0 Jan 10 18:36 boinc_lockfile
[2026-01-10 20:20:35] -rw-r--r--. 1 boincer umatlas      2890 Jan 10 18:36 pandaJob.out
[2026-01-10 20:20:35] -rw-------. 1 boincer umatlas        57 Jan 10 18:36 setup.sh.local
[2026-01-10 20:20:35] -rw-------. 1 boincer umatlas    989548 Jan 10 18:38 agis_schedconf.cvmfs.json
[2026-01-10 20:20:35] -rw-------. 1 boincer umatlas   1516240 Jan 10 18:38 agis_ddmendpoints.agis.ALL.json
[2026-01-10 20:20:35] drwx------. 5 boincer umatlas      4096 Jan 10 18:38 pilot3
[2026-01-10 20:20:35] -rw-r--r--. 1 boincer umatlas       530 Jan 10 20:00 boinc_task_state.xml
[2026-01-10 20:20:35] -rw-------. 1 boincer umatlas  47200608 Jan 10 20:18 HITS.47962010._002797.pool.root.1
[2026-01-10 20:20:35] -rw-------. 1 boincer umatlas      1044 Jan 10 20:18 memory_monitor_summary.json
[2026-01-10 20:20:35] -rw-------. 1 boincer umatlas   1222794 Jan 10 20:19 log.47962010._002797.job.log.tgz.1
[2026-01-10 20:20:35] -rw-r--r--. 1 boincer umatlas      6658 Jan 10 20:19 init_data.xml
[2026-01-10 20:20:35] -rw-------. 1 boincer umatlas      8578 Jan 10 20:19 heartbeat.json
[2026-01-10 20:20:35] -rw-------. 1 boincer umatlas        95 Jan 10 20:20 pilot_heartbeat.json
[2026-01-10 20:20:35] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 20:20 boinc_mmap_file
[2026-01-10 20:20:35] -rw-r--r--. 1 boincer umatlas        27 Jan 10 20:20 wrapper_checkpoint.txt
[2026-01-10 20:20:35] -rw-------. 1 boincer umatlas      5009 Jan 10 20:20 pilotlog.txt
[2026-01-10 20:20:35] -rw-------. 1 boincer umatlas    864451 Jan 10 20:20 log.47962010._002797.job.log.1
[2026-01-10 20:20:35] -rw-------. 1 boincer umatlas       353 Jan 10 20:20 output.list
[2026-01-10 20:20:35] -rw-r--r--. 1 boincer umatlas       620 Jan 10 20:20 runtime_log
[2026-01-10 20:20:35] -rw-------. 1 boincer umatlas   2109440 Jan 10 20:20 result.tar.gz
[2026-01-10 20:20:35] -rw-------. 1 boincer umatlas       652 Jan 10 20:20 YDEODmD9wy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmedhKDmuFXHYo.diag
[2026-01-10 20:20:35] -rw-r--r--. 1 boincer umatlas      9337 Jan 10 20:20 runtime_log.err
[2026-01-10 20:20:35] -rw-r--r--. 1 boincer umatlas     22445 Jan 10 20:20 stderr.txt
[2026-01-10 20:20:36] HITS file was successfully produced:
[2026-01-10 20:20:36] -rw-------. 1 boincer umatlas 47200608 Jan 10 20:18 shared/HITS.pool.root.1
[2026-01-10 20:20:36]  *** Contents of shared directory: ***
[2026-01-10 20:20:36] total 431404
[2026-01-10 20:20:36] -rw-r--r--. 2 boincer umatlas 391833146 Jan 10 18:36 ATLAS.root_0
[2026-01-10 20:20:36] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 18:36 start_atlas.sh
[2026-01-10 20:20:36] -rw-r--r--. 2 boincer umatlas    592619 Jan 10 18:36 input.tar.gz
[2026-01-10 20:20:36] -rw-------. 1 boincer umatlas  47200608 Jan 10 20:18 HITS.pool.root.1
[2026-01-10 20:20:36] -rw-------. 1 boincer umatlas   2109440 Jan 10 20:20 result.tar.gz
20:20:37 (2683947): run_atlas exited; CPU time 16605.032576
20:20:37 (2683947): called boinc_finish(0)

</stderr_txt>
]]>

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