Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:02:50 (369): wrapper (7.7.26015): starting
18:02:50 (369): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 18:02:50] Arguments: --nthreads 12
[2026-01-10 18:02:50] Threads: 12
[2026-01-10 18:02:50] Checking for CVMFS
[2026-01-10 18:02:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 18:02:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 18:02:51] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 18:02:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 18:02:51] 2.11.2.0 30551 183057 96804 154994 0 1 14951273 20275200 1 130560 0 71934824 99.895 10758014 29756 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 18:02:51] CVMFS is ok
[2026-01-10 18:02:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 18:02:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 18:02:51] Further information can be found at the LHC@home message board.
[2026-01-10 18:02:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 18:02:51] Checking for apptainer binary...
[2026-01-10 18:02:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 18:02:51] Running /usr/bin/apptainer --version
[2026-01-10 18:02:51] apptainer version 1.3.2-1.el7
[2026-01-10 18:02:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 18:02:53] c-205-16.aglt2.org
[2026-01-10 18:02:53] apptainer works
[2026-01-10 18:02:53] Set ATHENA_PROC_NUMBER=12
[2026-01-10 18:02:53] Set ATHENA_CORE_NUMBER=12
[2026-01-10 18:02:53] Starting ATLAS job with PandaID=6965803263
[2026-01-10 18:02:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 18:38:18]  *** The last 200 lines of the pilot log: ***
[2026-01-10 18:38:19]  is_tar=False
[2026-01-10 18:38:19]  lfn=log.47962010._002715.job.log.tgz.1
[2026-01-10 18:38:19]  mtime=0
[2026-01-10 18:38:19]  protocol_id=None
[2026-01-10 18:38:19]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-10 18:38:19]  replicas=None
[2026-01-10 18:38:19]  scope=mc16_13TeV
[2026-01-10 18:38:19]  status=None
[2026-01-10 18:38:19]  status_code=0
[2026-01-10 18:38:19]  storage_token=
[2026-01-10 18:38:19]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6965803263/log.47962010._002715.job.log.tgz.1
[2026-01-10 18:38:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/09/3b/log.47962010._002715.job.log.tgz.1
[2026-01-10 18:38:19]  workdir=None
[2026-01-10 18:38:19] ]
[2026-01-10 18:38:19] 2026-01-10 23:37:38,216 | INFO     | transferring file log.47962010._002715.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6965803263/log.47962010._002715.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-10 18:38:19] 2026-01-10 23:37:38,216 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6965803263/log.47962010._002715.job.log.tgz.1 /tmp/boinchome/slots/0/log.47962010._002715.job
[2026-01-10 18:38:19] 2026-01-10 23:37:38,238 | INFO     | adding to output.list: log.47962010._002715.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/09/3b/log.47962010._002715.job.log.tgz.
[2026-01-10 18:38:19] 2026-01-10 23:37:38,239 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 18:38:19] 2026-01-10 23:37:38,239 | INFO     | summary of transferred files:
[2026-01-10 18:38:19] 2026-01-10 23:37:38,239 | INFO     |  -- lfn=log.47962010._002715.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 18:38:19] 2026-01-10 23:37:38,240 | INFO     | stage-out finished correctly
[2026-01-10 18:38:19] 2026-01-10 23:37:38,739 | INFO     | monitor loop #162: job 0:6965803263 is in state 'finished'
[2026-01-10 18:38:19] 2026-01-10 23:37:38,739 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 18:38:19] 2026-01-10 23:37:39,483 | INFO     | time since job start (2070s) is within the limit (349056.0s)
[2026-01-10 18:38:19] 2026-01-10 23:37:40,697 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 18:38:19] 2026-01-10 23:37:40,863 | INFO     | job 6965803263 has state=finished
[2026-01-10 18:38:19] 2026-01-10 23:37:40,863 | INFO     | preparing for final server update for job 6965803263 in state='finished'
[2026-01-10 18:38:19] 2026-01-10 23:37:40,863 | INFO     | this job has now completed (state=finished)
[2026-01-10 18:38:19] 2026-01-10 23:37:40,864 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 18:38:19] 2026-01-10 23:37:40,864 | INFO     | log transfer has been attempted: DONE
[2026-01-10 18:38:19] 2026-01-10 23:37:40,864 | INFO     | job 6965803263 has finished - writing final server update
[2026-01-10 18:38:19] 2026-01-10 23:37:40,864 | INFO     | total number of processed events: 50 (read)
[2026-01-10 18:38:19] 2026-01-10 23:37:40,865 | INFO     | executing command: lscpu
[2026-01-10 18:38:19] 2026-01-10 23:37:40,890 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 18:38:19] 2026-01-10 23:37:41,247 | INFO     | monitor loop #163: job 0:6965803263 is in state 'finished'
[2026-01-10 18:38:19] 2026-01-10 23:37:41,247 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 18:38:19] 2026-01-10 23:37:41,489 | INFO     | time since job start (2072s) is within the limit (349056.0s)
[2026-01-10 18:38:19] 2026-01-10 23:37:43,494 | INFO     | time since job start (2074s) is within the limit (349056.0s)
[2026-01-10 18:38:19] 2026-01-10 23:37:43,750 | INFO     | monitor loop #164: job 0:6965803263 is in state 'finished'
[2026-01-10 18:38:19] 2026-01-10 23:37:43,751 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 18:38:19] 2026-01-10 23:37:45,500 | INFO     | time since job start (2076s) is within the limit (349056.0s)
[2026-01-10 18:38:19] 2026-01-10 23:37:45,743 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-10 18:38:19] 2026-01-10 23:37:45,747 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2026-01-10 18:38:19] 2026-01-10 23:37:45,750 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6965803263/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 18:38:19] 2026-01-10 23:37:45,751 | INFO     | extracted standard info from prmon json
[2026-01-10 18:38:19] 2026-01-10 23:37:45,751 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 18:38:19] 2026-01-10 23:37:45,751 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 18:38:19] 2026-01-10 23:37:45,753 | INFO     | fitting pss+swap vs Time
[2026-01-10 18:38:19] 2026-01-10 23:37:45,753 | INFO     | sum of square deviations: 6092925.851851851
[2026-01-10 18:38:19] 2026-01-10 23:37:45,753 | INFO     | sum of deviations: -1783165157.5925925
[2026-01-10 18:38:19] 2026-01-10 23:37:45,753 | INFO     | mean x: 1768087318.074074
[2026-01-10 18:38:19] 2026-01-10 23:37:45,754 | INFO     | mean y: 2852928.296296296
[2026-01-10 18:38:19] 2026-01-10 23:37:45,754 | INFO     | intersect: 517454037766.3291
[2026-01-10 18:38:19] 2026-01-10 23:37:45,754 | INFO     | chi2: 0.2828838923114418
[2026-01-10 18:38:19] 2026-01-10 23:37:45,754 | INFO     | current memory leak: -292.66 B/s (using 27 data points, chi2=0.28)
[2026-01-10 18:38:19] 2026-01-10 23:37:45,754 | INFO     | could have reported an average CPU frequency of 1791 MHz (5 samples)
[2026-01-10 18:38:19] 2026-01-10 23:37:45,754 | INFO     | ..............................
[2026-01-10 18:38:19] 2026-01-10 23:37:45,755 | INFO     | . Timing measurements:
[2026-01-10 18:38:19] 2026-01-10 23:37:45,755 | INFO     | . get job = 0 s
[2026-01-10 18:38:19] 2026-01-10 23:37:45,755 | INFO     | . initial setup = 2 s
[2026-01-10 18:38:19] 2026-01-10 23:37:45,755 | INFO     | . payload setup = 8 s
[2026-01-10 18:38:19] 2026-01-10 23:37:45,755 | INFO     | . stage-in = 0 s
[2026-01-10 18:38:19] 2026-01-10 23:37:45,755 | INFO     | . payload execution = 2038 s
[2026-01-10 18:38:19] 2026-01-10 23:37:45,755 | INFO     | . stage-out = 0 s
[2026-01-10 18:38:19] 2026-01-10 23:37:45,755 | INFO     | . log creation = 0 s
[2026-01-10 18:38:19] 2026-01-10 23:37:45,755 | INFO     | ..............................
[2026-01-10 18:38:19] 2026-01-10 23:37:45,836 | INFO     | 
[2026-01-10 18:38:19] 2026-01-10 23:37:45,837 | INFO     | job summary report
[2026-01-10 18:38:19] 2026-01-10 23:37:45,837 | INFO     | --------------------------------------------------
[2026-01-10 18:38:19] 2026-01-10 23:37:45,837 | INFO     | PanDA job id: 6965803263
[2026-01-10 18:38:19] 2026-01-10 23:37:45,837 | INFO     | task id: 47962010
[2026-01-10 18:38:19] 2026-01-10 23:37:45,837 | INFO     | errors: (none)
[2026-01-10 18:38:19] 2026-01-10 23:37:45,837 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 18:38:19] 2026-01-10 23:37:45,837 | INFO     | pilot state: finished 
[2026-01-10 18:38:19] 2026-01-10 23:37:45,837 | INFO     | transexitcode: 0
[2026-01-10 18:38:19] 2026-01-10 23:37:45,837 | INFO     | exeerrorcode: 0
[2026-01-10 18:38:19] 2026-01-10 23:37:45,838 | INFO     | exeerrordiag: 
[2026-01-10 18:38:19] 2026-01-10 23:37:45,838 | INFO     | exitcode: 0
[2026-01-10 18:38:19] 2026-01-10 23:37:45,838 | INFO     | exitmsg: OK
[2026-01-10 18:38:19] 2026-01-10 23:37:45,838 | INFO     | cpuconsumptiontime: 17912 s
[2026-01-10 18:38:19] 2026-01-10 23:37:45,838 | INFO     | nevents: 50
[2026-01-10 18:38:19] 2026-01-10 23:37:45,838 | INFO     | neventsw: 0
[2026-01-10 18:38:19] 2026-01-10 23:37:45,838 | INFO     | pid: 11029
[2026-01-10 18:38:19] 2026-01-10 23:37:45,838 | INFO     | pgrp: 11029
[2026-01-10 18:38:19] 2026-01-10 23:37:45,838 | INFO     | corecount: 12
[2026-01-10 18:38:19] 2026-01-10 23:37:45,838 | INFO     | event service: False
[2026-01-10 18:38:19] 2026-01-10 23:37:45,839 | INFO     | sizes: {0: 2284455, 1: 2284597, 6: 2284859, 11: 2284887, 2050: 2310725, 2052: 2319719, 2055: 2319903, 2060: 2320181}
[2026-01-10 18:38:19] 2026-01-10 23:37:45,839 | INFO     | --------------------------------------------------
[2026-01-10 18:38:19] 2026-01-10 23:37:45,839 | INFO     | 
[2026-01-10 18:38:19] 2026-01-10 23:37:45,839 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-10 18:38:19] 2026-01-10 23:37:45,861 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 18:38:19] 2026-01-10 23:37:45,861 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 18:38:19] 2026-01-10 23:37:45,861 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 18:38:19] 2026-01-10 23:37:45,861 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 18:38:19] 2026-01-10 23:37:45,862 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 18:38:19] 2026-01-10 23:37:45,862 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 18:38:19] 2026-01-10 23:37:45,862 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 18:38:19] 2026-01-10 23:37:45,862 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 18:38:19] 2026-01-10 23:37:45,862 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 18:38:19] 2026-01-10 23:37:45,862 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 18:38:19] 2026-01-10 23:37:45,863 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 18:38:19] 2026-01-10 23:37:45,863 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 18:38:19] 2026-01-10 23:37:45,863 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 18:38:19] 2026-01-10 23:37:45,863 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 18:38:19] 2026-01-10 23:37:45,863 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 18:38:19] 2026-01-10 23:37:45,864 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 18:38:19] 2026-01-10 23:37:45,864 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 18:38:19] 2026-01-10 23:37:45,864 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 18:38:19] 2026-01-10 23:37:45,864 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 18:38:19] 2026-01-10 23:37:45,864 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 18:38:19] 2026-01-10 23:37:45,864 | INFO     | job 6965803263 has completed (purged errors)
[2026-01-10 18:38:19] 2026-01-10 23:37:45,865 | INFO     | overall cleanup function is called
[2026-01-10 18:38:19] 2026-01-10 23:37:46,880 | INFO     | --- collectZombieJob: --- 10, [11029]
[2026-01-10 18:38:19] 2026-01-10 23:37:46,881 | INFO     | zombie collector waiting for pid 11029
[2026-01-10 18:38:19] 2026-01-10 23:37:46,886 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 18:38:19] 2026-01-10 23:37:46,886 | INFO     | collected zombie processes
[2026-01-10 18:38:19] 2026-01-10 23:37:46,886 | INFO     | will attempt to kill all subprocesses of pid=11029
[2026-01-10 18:38:19] 2026-01-10 23:37:46,976 | INFO     | process IDs to be killed: [11029] (in reverse order)
[2026-01-10 18:38:19] 2026-01-10 23:37:47,024 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 18:38:19] 2026-01-10 23:37:47,024 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 18:38:19] 2026-01-10 23:37:47,028 | INFO     | did not find any defunct processes belonging to 11029
[2026-01-10 18:38:19] 2026-01-10 23:37:47,032 | INFO     | did not find any defunct processes belonging to 11029
[2026-01-10 18:38:19] 2026-01-10 23:37:47,032 | INFO     | ready for new job
[2026-01-10 18:38:19] 2026-01-10 23:37:47,032 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 18:38:19] 2026-01-10 23:37:47,033 | INFO     | ***************************************
[2026-01-10 18:38:19] 2026-01-10 23:37:47,033 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 18:38:19] 2026-01-10 23:37:47,033 | INFO     | ***************************************
[2026-01-10 18:38:19] 2026-01-10 23:37:47,034 | INFO     | 
[2026-01-10 18:38:19] 2026-01-10 23:37:47,034 | INFO     | architecture information:
[2026-01-10 18:38:19] 2026-01-10 23:37:47,035 | INFO     | executing command: cat /etc/os-release
[2026-01-10 18:38:19] 2026-01-10 23:37:47,050 | INFO     | cat /etc/os-release:
[2026-01-10 18:38:19] NAME="CentOS Linux"
[2026-01-10 18:38:19] VERSION="7 (Core)"
[2026-01-10 18:38:19] ID="centos"
[2026-01-10 18:38:19] ID_LIKE="rhel fedora"
[2026-01-10 18:38:19] VERSION_ID="7"
[2026-01-10 18:38:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 18:38:19] ANSI_COLOR="0;31"
[2026-01-10 18:38:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 18:38:19] HOME_URL="https://www.centos.org/"
[2026-01-10 18:38:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 18:38:19] 
[2026-01-10 18:38:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 18:38:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 18:38:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 18:38:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 18:38:19] 
[2026-01-10 18:38:19] 2026-01-10 23:37:47,050 | INFO     | ***************************************
[2026-01-10 18:38:19] 2026-01-10 23:37:47,553 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-10 18:38:19] 2026-01-10 23:37:47,570 | INFO     | sufficient remaining disk space (29284630528 B)
[2026-01-10 18:38:19] 2026-01-10 23:37:47,570 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 18:38:19] 2026-01-10 23:37:47,570 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 18:38:19] 2026-01-10 23:37:47,570 | INFO     | update_server=False
[2026-01-10 18:38:19] 2026-01-10 23:37:47,570 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 18:38:19] 2026-01-10 23:37:47,571 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 18:38:19] 2026-01-10 23:37:47,571 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 18:38:19] 2026-01-10 23:37:47,572 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 18:38:19] 2026-01-10 23:37:47,572 | INFO     | aborting loop
[2026-01-10 18:38:19] 2026-01-10 23:37:47,956 | INFO     | all job control threads have been joined
[2026-01-10 18:38:19] 2026-01-10 23:37:48,105 | INFO     | all payload control threads have been joined
[2026-01-10 18:38:19] 2026-01-10 23:37:48,337 | INFO     | all data control threads have been joined
[2026-01-10 18:38:19] 2026-01-10 23:37:48,576 | INFO     | [job] retrieve thread has finished
[2026-01-10 18:38:19] 2026-01-10 23:37:48,577 | INFO     | [job] queue monitor thread has finished
[2026-01-10 18:38:19] 2026-01-10 23:37:48,578 | INFO     | [job] job monitor thread has finished
[2026-01-10 18:38:19] 2026-01-10 23:37:48,592 | INFO     | [payload] validate_post thread has finished
[2026-01-10 18:38:19] 2026-01-10 23:37:48,644 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 18:38:19] 2026-01-10 23:37:48,840 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 18:38:19] 2026-01-10 23:37:48,961 | INFO     | [job] control thread has finished
[2026-01-10 18:38:19] 2026-01-10 23:37:49,110 | INFO     | [payload] control thread has finished
[2026-01-10 18:38:19] 2026-01-10 23:37:49,168 | INFO     | [payload] failed_post thread has finished
[2026-01-10 18:38:19] 2026-01-10 23:37:49,172 | INFO     | [data] copytool_in thread has finished
[2026-01-10 18:38:19] 2026-01-10 23:37:49,325 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 18:38:19] 2026-01-10 23:37:49,343 | INFO     | [data] control thread has finished
[2026-01-10 18:38:19] 2026-01-10 23:37:49,648 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 18:38:19] 2026-01-10 23:37:49,677 | INFO     | [job] validate thread has finished
[2026-01-10 18:38:19] 2026-01-10 23:37:49,873 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 18:38:19] 2026-01-10 23:37:50,845 | INFO     | [data] copytool_out thread has finished
[2026-01-10 18:38:19] 2026-01-10 23:37:51,577 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 18:38:19] 2026-01-10 23:38:12,513 | INFO     | [monitor] cgroup control has ended
[2026-01-10 18:38:19] 2026-01-10 23:38:13,318 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139855886870336)>', '<ExcThread(monitor, started 139854981613312)>']
[2026-01-10 18:38:19] 2026-01-10 23:38:18,339 | INFO     | all workflow threads have been joined
[2026-01-10 18:38:19] 2026-01-10 23:38:18,339 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 18:38:19] 2026-01-10 23:38:18,339 | INFO     | traces error code: 0
[2026-01-10 18:38:19] 2026-01-10 23:38:18,339 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 18:38:19] 2026-01-10 23:38:18,704 | INFO     | PID=4643 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-10 18:38:19] 2026-01-10 23:38:18,704 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 18:38:19] 2026-01-10 23:38:18,704 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 18:38:19] 2026-01-10 23:38:18,704 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 18:38:19] 2026-01-10 23:38:18,704 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 18:38:19] 2026-01-10 23:38:18,705 | INFO     | [monitor] control thread has ended
[2026-01-10 18:38:19] 2026-01-10 23:38:18,794 [wrapper] ==== pilot stdout END ====
[2026-01-10 18:38:19] 2026-01-10 23:38:18,797 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 18:38:19] 2026-01-10 23:38:18,801 [wrapper] pilotpid: 4643
[2026-01-10 18:38:19] 2026-01-10 23:38:18,805 [wrapper] Pilot exit status: 0
[2026-01-10 18:38:19] 2026-01-10 23:38:18,820 [wrapper] pandaids: 6965803263
[2026-01-10 18:38:19] 2026-01-10 23:38:18,858 [wrapper] cleanup supervisor_pilot 28041 4644
[2026-01-10 18:38:19] 2026-01-10 23:38:18,862 [wrapper] Test setup, not cleaning
[2026-01-10 18:38:19] 2026-01-10 23:38:18,866 [wrapper] apfmon messages muted
[2026-01-10 18:38:19] 2026-01-10 23:38:18,870 [wrapper] ==== wrapper stdout END ====
[2026-01-10 18:38:19] 2026-01-10 23:38:18,874 [wrapper] ==== wrapper stderr END ====
[2026-01-10 18:38:19]  *** Error codes and diagnostics ***
[2026-01-10 18:38:19]     "exeErrorCode": 0,
[2026-01-10 18:38:19]     "exeErrorDiag": "",
[2026-01-10 18:38:19]     "pilotErrorCode": 0,
[2026-01-10 18:38:19]     "pilotErrorDiag": "",
[2026-01-10 18:38:19]  *** Listing of results directory ***
[2026-01-10 18:38:19] total 437796
[2026-01-10 18:38:19] -rw-r--r-- 1 boincer umatlas    579449 Jan 10 18:00 pilot3.tar.gz
[2026-01-10 18:38:19] -rw-r--r-- 1 boincer umatlas      5112 Jan 10 18:01 queuedata.json
[2026-01-10 18:38:19] -rwx------ 1 boincer umatlas     36322 Jan 10 18:02 runpilot2-wrapper.sh
[2026-01-10 18:38:19] -rw-r--r-- 1 boincer umatlas       100 Jan 10 18:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 18:38:19] -rwxr-xr-x 1 boincer umatlas      7986 Jan 10 18:02 run_atlas
[2026-01-10 18:38:19] -rw-r--r-- 1 boincer umatlas       105 Jan 10 18:02 job.xml
[2026-01-10 18:38:19] -rw-r--r-- 2 boincer umatlas 393042859 Jan 10 18:02 EVNT.47962006._000069.pool.root.1
[2026-01-10 18:38:19] -rw-r--r-- 2 boincer umatlas     15847 Jan 10 18:02 start_atlas.sh
[2026-01-10 18:38:19] drwxrwx--x 2 boincer umatlas      4096 Jan 10 18:02 shared
[2026-01-10 18:38:19] -rw-r--r-- 2 boincer umatlas    592617 Jan 10 18:02 input.tar.gz
[2026-01-10 18:38:19] -rw-r--r-- 1 boincer umatlas         0 Jan 10 18:02 boinc_lockfile
[2026-01-10 18:38:19] -rw-r--r-- 1 boincer umatlas      2890 Jan 10 18:02 pandaJob.out
[2026-01-10 18:38:19] -rw------- 1 boincer umatlas        57 Jan 10 18:02 setup.sh.local
[2026-01-10 18:38:19] -rw------- 1 boincer umatlas    989548 Jan 10 18:03 agis_schedconf.cvmfs.json
[2026-01-10 18:38:19] -rw------- 1 boincer umatlas   1516240 Jan 10 18:03 agis_ddmendpoints.agis.ALL.json
[2026-01-10 18:38:19] drwx------ 5 boincer umatlas      4096 Jan 10 18:03 pilot3
[2026-01-10 18:38:19] -rw-r--r-- 1 boincer umatlas       529 Jan 10 18:28 boinc_task_state.xml
[2026-01-10 18:38:19] -rw-r--r-- 1 boincer umatlas      5951 Jan 10 18:36 init_data.xml
[2026-01-10 18:38:19] -rw------- 1 boincer umatlas  47475519 Jan 10 18:37 HITS.47962010._002715.pool.root.1
[2026-01-10 18:38:19] -rw------- 1 boincer umatlas        95 Jan 10 18:37 pilot_heartbeat.json
[2026-01-10 18:38:19] -rw------- 1 boincer umatlas      1050 Jan 10 18:37 memory_monitor_summary.json
[2026-01-10 18:38:19] -rw------- 1 boincer umatlas   1592082 Jan 10 18:37 log.47962010._002715.job.log.tgz.1
[2026-01-10 18:38:19] -rw------- 1 boincer umatlas      8619 Jan 10 18:37 heartbeat.json
[2026-01-10 18:38:19] -rw-r--r-- 1 boincer umatlas        27 Jan 10 18:37 wrapper_checkpoint.txt
[2026-01-10 18:38:19] -rw-r--r-- 1 boincer umatlas      8192 Jan 10 18:37 boinc_mmap_file
[2026-01-10 18:38:19] -rw------- 1 boincer umatlas       744 Jan 10 18:38 pilotlog.txt
[2026-01-10 18:38:19] -rw------- 1 boincer umatlas    340924 Jan 10 18:38 log.47962010._002715.job.log.1
[2026-01-10 18:38:19] -rw------- 1 boincer umatlas       353 Jan 10 18:38 output.list
[2026-01-10 18:38:19] -rw-r--r-- 1 boincer umatlas       620 Jan 10 18:38 runtime_log
[2026-01-10 18:38:19] -rw------- 1 boincer umatlas   1955840 Jan 10 18:38 result.tar.gz
[2026-01-10 18:38:19] -rw-r--r-- 1 boincer umatlas      9344 Jan 10 18:38 runtime_log.err
[2026-01-10 18:38:19] -rw------- 1 boincer umatlas       659 Jan 10 18:38 Ig5NDmD9wy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmadhKDmGNr7jn.diag
[2026-01-10 18:38:19] -rw-r--r-- 1 boincer umatlas     21661 Jan 10 18:38 stderr.txt
[2026-01-10 18:38:19] HITS file was successfully produced:
[2026-01-10 18:38:19] -rw------- 1 boincer umatlas 47475519 Jan 10 18:37 shared/HITS.pool.root.1
[2026-01-10 18:38:19]  *** Contents of shared directory: ***
[2026-01-10 18:38:19] total 432708
[2026-01-10 18:38:19] -rw-r--r-- 2 boincer umatlas 393042859 Jan 10 18:02 ATLAS.root_0
[2026-01-10 18:38:19] -rw-r--r-- 2 boincer umatlas     15847 Jan 10 18:02 start_atlas.sh
[2026-01-10 18:38:19] -rw-r--r-- 2 boincer umatlas    592617 Jan 10 18:02 input.tar.gz
[2026-01-10 18:38:19] -rw------- 1 boincer umatlas  47475519 Jan 10 18:37 HITS.pool.root.1
[2026-01-10 18:38:19] -rw------- 1 boincer umatlas   1955840 Jan 10 18:38 result.tar.gz
18:38:20 (369): run_atlas exited; CPU time 17511.742669
18:38:20 (369): called boinc_finish(0)

</stderr_txt>
]]>

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