Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:21:19 (3680359): wrapper (7.7.26015): starting
18:21:19 (3680359): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 18:21:19] Arguments: --nthreads 8
[2026-01-10 18:21:19] Threads: 8
[2026-01-10 18:21:19] Checking for CVMFS
[2026-01-10 18:21:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 18:21:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 18:21:20] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 18:21:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 18:21:20] 2.13.3.0 6557 24963 202740 154997 3 62 30911335 40960001 22680 16776704 0 60691093 99.633 59639766 42395 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 18:21:20] CVMFS is ok
[2026-01-10 18:21:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 18:21:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 18:21:20] Further information can be found at the LHC@home message board.
[2026-01-10 18:21:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 18:21:20] Checking for apptainer binary...
[2026-01-10 18:21:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 18:21:20] Running /usr/bin/apptainer --version
[2026-01-10 18:21:20] apptainer version 1.4.5-2.el9
[2026-01-10 18:21:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 18:21:21] c-212-20.aglt2.org
[2026-01-10 18:21:21] apptainer works
[2026-01-10 18:21:21] Set ATHENA_PROC_NUMBER=8
[2026-01-10 18:21:21] Set ATHENA_CORE_NUMBER=8
[2026-01-10 18:21:21] Starting ATLAS job with PandaID=6965803271
[2026-01-10 18:21:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 19:52:40]  *** The last 200 lines of the pilot log: ***
[2026-01-10 19:52:40]  replicas=None
[2026-01-10 19:52:40]  scope=mc16_13TeV
[2026-01-10 19:52:40]  status=None
[2026-01-10 19:52:40]  status_code=0
[2026-01-10 19:52:40]  storage_token=
[2026-01-10 19:52:40]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6965803271/log.47962010._002723.job.log.tgz.1
[2026-01-10 19:52:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/78/10/log.47962010._002723.job.log.tgz.1
[2026-01-10 19:52:40]  workdir=None
[2026-01-10 19:52:40] ]
[2026-01-10 19:52:40] 2026-01-11 00:51:51,460 | INFO     | transferring file log.47962010._002723.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6965803271/log.47962010._002723.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-10 19:52:40] 2026-01-11 00:51:51,460 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6965803271/log.47962010._002723.job.log.tgz.1 /tmp/boinchome/slots/3/log.47962010._002723.job
[2026-01-10 19:52:40] 2026-01-11 00:51:51,485 | INFO     | adding to output.list: log.47962010._002723.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/78/10/log.47962010._002723.job.log.tgz.
[2026-01-10 19:52:40] 2026-01-11 00:51:51,486 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 19:52:40] 2026-01-11 00:51:51,486 | INFO     | summary of transferred files:
[2026-01-10 19:52:40] 2026-01-11 00:51:51,486 | INFO     |  -- lfn=log.47962010._002723.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 19:52:40] 2026-01-11 00:51:51,486 | INFO     | stage-out finished correctly
[2026-01-10 19:52:40] 2026-01-11 00:51:51,551 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 19:52:40] 2026-01-11 00:51:52,403 | INFO     | time since job start (5367s) is within the limit (349056.0s)
[2026-01-10 19:52:40] 2026-01-11 00:51:53,172 | INFO     | job 6965803271 has state=finished
[2026-01-10 19:52:40] 2026-01-11 00:51:53,172 | INFO     | preparing for final server update for job 6965803271 in state='finished'
[2026-01-10 19:52:40] 2026-01-11 00:51:53,173 | INFO     | this job has now completed (state=finished)
[2026-01-10 19:52:40] 2026-01-11 00:51:53,173 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 19:52:40] 2026-01-11 00:51:53,173 | INFO     | log transfer has been attempted: DONE
[2026-01-10 19:52:40] 2026-01-11 00:51:53,173 | INFO     | job 6965803271 has finished - writing final server update
[2026-01-10 19:52:40] 2026-01-11 00:51:53,173 | INFO     | total number of processed events: 50 (read)
[2026-01-10 19:52:40] 2026-01-11 00:51:53,174 | INFO     | executing command: lscpu
[2026-01-10 19:52:40] 2026-01-11 00:51:53,262 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 19:52:40] 2026-01-11 00:51:54,409 | INFO     | time since job start (5369s) is within the limit (349056.0s)
[2026-01-10 19:52:40] 2026-01-11 00:51:54,607 | WARNING  | process 3695870 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 19:52:40] 2026-01-11 00:51:54,607 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6965803271/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 19:52:40] 2026-01-11 00:51:54,918 | INFO     | number of running child processes to parent process 3695870: 1
[2026-01-10 19:52:40] 2026-01-11 00:51:54,918 | INFO     | maximum number of monitored processes: 13
[2026-01-10 19:52:40] 2026-01-11 00:51:56,416 | INFO     | time since job start (5371s) is within the limit (349056.0s)
[2026-01-10 19:52:40] 2026-01-11 00:51:57,421 | INFO     | monitor loop #386: job 0:6965803271 is in state 'finished'
[2026-01-10 19:52:40] 2026-01-11 00:51:57,421 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 19:52:40] 2026-01-11 00:51:57,485 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 19:52:40] 2026-01-11 00:51:57,515 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3285.2438020833342
[2026-01-10 19:52:40] 2026-01-11 00:51:57,530 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6965803271/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 19:52:40] 2026-01-11 00:51:57,531 | INFO     | extracted standard info from prmon json
[2026-01-10 19:52:40] 2026-01-11 00:51:57,531 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 19:52:40] 2026-01-11 00:51:57,531 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 19:52:40] 2026-01-11 00:51:57,533 | INFO     | fitting pss+swap vs Time
[2026-01-10 19:52:40] 2026-01-11 00:51:57,534 | INFO     | sum of square deviations: 158777720.38749978
[2026-01-10 19:52:40] 2026-01-11 00:51:57,534 | INFO     | sum of deviations: 47476240091.22501
[2026-01-10 19:52:40] 2026-01-11 00:51:57,534 | INFO     | mean x: 1768090142.2875
[2026-01-10 19:52:40] 2026-01-11 00:51:57,534 | INFO     | mean y: 2300979.425
[2026-01-10 19:52:40] 2026-01-11 00:51:57,534 | INFO     | intersect: -528675601016.56647
[2026-01-10 19:52:40] 2026-01-11 00:51:57,534 | INFO     | chi2: 5.12081074150666
[2026-01-10 19:52:40] 2026-01-11 00:51:57,535 | INFO     | current memory leak: 299.01 B/s (using 80 data points, chi2=5.12)
[2026-01-10 19:52:40] 2026-01-11 00:51:57,535 | INFO     | could have reported an average CPU frequency of 3301 MHz (6 samples)
[2026-01-10 19:52:40] 2026-01-11 00:51:57,535 | INFO     | ..............................
[2026-01-10 19:52:40] 2026-01-11 00:51:57,535 | INFO     | . Timing measurements:
[2026-01-10 19:52:40] 2026-01-11 00:51:57,535 | INFO     | . get job = 0 s
[2026-01-10 19:52:40] 2026-01-11 00:51:57,536 | INFO     | . initial setup = 6 s
[2026-01-10 19:52:40] 2026-01-11 00:51:57,536 | INFO     | . payload setup = 26 s
[2026-01-10 19:52:40] 2026-01-11 00:51:57,536 | INFO     | . stage-in = 0 s
[2026-01-10 19:52:40] 2026-01-11 00:51:57,536 | INFO     | . payload execution = 5296 s
[2026-01-10 19:52:40] 2026-01-11 00:51:57,536 | INFO     | . stage-out = 0 s
[2026-01-10 19:52:40] 2026-01-11 00:51:57,536 | INFO     | . log creation = 0 s
[2026-01-10 19:52:40] 2026-01-11 00:51:57,536 | INFO     | ..............................
[2026-01-10 19:52:40] 2026-01-11 00:51:57,610 | INFO     | 
[2026-01-10 19:52:40] 2026-01-11 00:51:57,610 | INFO     | job summary report
[2026-01-10 19:52:40] 2026-01-11 00:51:57,610 | INFO     | --------------------------------------------------
[2026-01-10 19:52:40] 2026-01-11 00:51:57,611 | INFO     | PanDA job id: 6965803271
[2026-01-10 19:52:40] 2026-01-11 00:51:57,611 | INFO     | task id: 47962010
[2026-01-10 19:52:40] 2026-01-11 00:51:57,611 | INFO     | errors: (none)
[2026-01-10 19:52:40] 2026-01-11 00:51:57,611 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 19:52:40] 2026-01-11 00:51:57,611 | INFO     | pilot state: finished 
[2026-01-10 19:52:40] 2026-01-11 00:51:57,611 | INFO     | transexitcode: 0
[2026-01-10 19:52:40] 2026-01-11 00:51:57,611 | INFO     | exeerrorcode: 0
[2026-01-10 19:52:40] 2026-01-11 00:51:57,611 | INFO     | exeerrordiag: 
[2026-01-10 19:52:40] 2026-01-11 00:51:57,611 | INFO     | exitcode: 0
[2026-01-10 19:52:40] 2026-01-11 00:51:57,611 | INFO     | exitmsg: OK
[2026-01-10 19:52:40] 2026-01-11 00:51:57,611 | INFO     | cpuconsumptiontime: 11389 s
[2026-01-10 19:52:40] 2026-01-11 00:51:57,611 | INFO     | nevents: 50
[2026-01-10 19:52:40] 2026-01-11 00:51:57,611 | INFO     | neventsw: 0
[2026-01-10 19:52:40] 2026-01-11 00:51:57,611 | INFO     | pid: 3695870
[2026-01-10 19:52:40] 2026-01-11 00:51:57,611 | INFO     | pgrp: 3695870
[2026-01-10 19:52:40] 2026-01-11 00:51:57,612 | INFO     | corecount: 8
[2026-01-10 19:52:40] 2026-01-11 00:51:57,612 | INFO     | event service: False
[2026-01-10 19:52:40] 2026-01-11 00:51:57,612 | INFO     | sizes: {0: 2283741, 1: 2284426, 2: 2284625, 13: 2284625, 15: 2284943, 24: 2284971, 5326: 2312359, 5327: 2321409, 5333: 2321599}
[2026-01-10 19:52:40] 2026-01-11 00:51:57,612 | INFO     | --------------------------------------------------
[2026-01-10 19:52:40] 2026-01-11 00:51:57,612 | INFO     | 
[2026-01-10 19:52:40] 2026-01-11 00:51:57,612 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-10 19:52:40] 2026-01-11 00:51:57,633 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 19:52:40] 2026-01-11 00:51:57,633 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 19:52:40] 2026-01-11 00:51:57,633 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 19:52:40] 2026-01-11 00:51:57,634 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 19:52:40] 2026-01-11 00:51:57,634 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 19:52:40] 2026-01-11 00:51:57,634 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 19:52:40] 2026-01-11 00:51:57,634 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 19:52:40] 2026-01-11 00:51:57,634 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 19:52:40] 2026-01-11 00:51:57,634 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 19:52:40] 2026-01-11 00:51:57,634 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 19:52:40] 2026-01-11 00:51:57,634 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 19:52:40] 2026-01-11 00:51:57,634 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 19:52:40] 2026-01-11 00:51:57,635 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 19:52:40] 2026-01-11 00:51:57,635 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 19:52:40] 2026-01-11 00:51:57,635 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 19:52:40] 2026-01-11 00:51:57,635 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 19:52:40] 2026-01-11 00:51:57,635 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 19:52:40] 2026-01-11 00:51:57,635 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 19:52:40] 2026-01-11 00:51:57,635 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 19:52:40] 2026-01-11 00:51:57,635 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 19:52:40] 2026-01-11 00:51:57,635 | INFO     | job 6965803271 has completed (purged errors)
[2026-01-10 19:52:40] 2026-01-11 00:51:57,636 | INFO     | overall cleanup function is called
[2026-01-10 19:52:40] 2026-01-11 00:51:58,044 | INFO     | PID=3686884 has CPU usage=13.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-10 19:52:40] 2026-01-11 00:51:58,044 | INFO     | .. there are 15 such processes running
[2026-01-10 19:52:40] 2026-01-11 00:51:58,653 | INFO     | --- collectZombieJob: --- 10, [3695870]
[2026-01-10 19:52:40] 2026-01-11 00:51:58,653 | INFO     | zombie collector waiting for pid 3695870
[2026-01-10 19:52:40] 2026-01-11 00:51:58,653 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 19:52:40] 2026-01-11 00:51:58,653 | INFO     | collected zombie processes
[2026-01-10 19:52:40] 2026-01-11 00:51:58,653 | INFO     | will attempt to kill all subprocesses of pid=3695870
[2026-01-10 19:52:40] 2026-01-11 00:51:59,007 | INFO     | process IDs to be killed: [3695870] (in reverse order)
[2026-01-10 19:52:40] 2026-01-11 00:51:59,146 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 19:52:40] 2026-01-11 00:51:59,147 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 19:52:40] 2026-01-11 00:51:59,164 | INFO     | did not find any defunct processes belonging to 3695870
[2026-01-10 19:52:40] 2026-01-11 00:51:59,180 | INFO     | did not find any defunct processes belonging to 3695870
[2026-01-10 19:52:40] 2026-01-11 00:51:59,181 | INFO     | ready for new job
[2026-01-10 19:52:40] 2026-01-11 00:51:59,181 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 19:52:40] 2026-01-11 00:51:59,183 | INFO     | ***************************************
[2026-01-10 19:52:40] 2026-01-11 00:51:59,185 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 19:52:40] 2026-01-11 00:51:59,185 | INFO     | ***************************************
[2026-01-10 19:52:40] 2026-01-11 00:51:59,186 | INFO     | 
[2026-01-10 19:52:40] 2026-01-11 00:51:59,190 | INFO     | architecture information:
[2026-01-10 19:52:40] 2026-01-11 00:51:59,191 | INFO     | executing command: cat /etc/os-release
[2026-01-10 19:52:40] 2026-01-11 00:51:59,206 | INFO     | cat /etc/os-release:
[2026-01-10 19:52:40] NAME="CentOS Linux"
[2026-01-10 19:52:40] VERSION="7 (Core)"
[2026-01-10 19:52:40] ID="centos"
[2026-01-10 19:52:40] ID_LIKE="rhel fedora"
[2026-01-10 19:52:40] VERSION_ID="7"
[2026-01-10 19:52:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 19:52:40] ANSI_COLOR="0;31"
[2026-01-10 19:52:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 19:52:40] HOME_URL="https://www.centos.org/"
[2026-01-10 19:52:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 19:52:40] 
[2026-01-10 19:52:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 19:52:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 19:52:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 19:52:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 19:52:40] 
[2026-01-10 19:52:40] 2026-01-11 00:51:59,206 | INFO     | ***************************************
[2026-01-10 19:52:40] 2026-01-11 00:51:59,709 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-10 19:52:40] 2026-01-11 00:51:59,726 | INFO     | sufficient remaining disk space (129615527936 B)
[2026-01-10 19:52:40] 2026-01-11 00:51:59,726 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 19:52:40] 2026-01-11 00:51:59,727 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 19:52:40] 2026-01-11 00:51:59,727 | INFO     | update_server=False
[2026-01-10 19:52:40] 2026-01-11 00:51:59,727 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 19:52:40] 2026-01-11 00:51:59,727 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 19:52:40] 2026-01-11 00:51:59,924 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 19:52:40] 2026-01-11 00:51:59,925 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 19:52:40] 2026-01-11 00:51:59,925 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 19:52:40] 2026-01-11 00:51:59,925 | INFO     | will abort loop
[2026-01-10 19:52:40] 2026-01-11 00:52:00,121 | INFO     | all data control threads have been joined
[2026-01-10 19:52:40] 2026-01-11 00:52:00,626 | INFO     | all job control threads have been joined
[2026-01-10 19:52:40] 2026-01-11 00:52:00,732 | INFO     | [job] retrieve thread has finished
[2026-01-10 19:52:40] 2026-01-11 00:52:00,738 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 19:52:40] 2026-01-11 00:52:00,763 | INFO     | all payload control threads have been joined
[2026-01-10 19:52:40] 2026-01-11 00:52:00,921 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 19:52:40] 2026-01-11 00:52:00,930 | INFO     | [job] job monitor thread has finished
[2026-01-10 19:52:40] 2026-01-11 00:52:00,930 | INFO     | [payload] failed_post thread has finished
[2026-01-10 19:52:40] 2026-01-11 00:52:01,126 | INFO     | [data] control thread has finished
[2026-01-10 19:52:40] 2026-01-11 00:52:01,254 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 19:52:40] 2026-01-11 00:52:01,381 | INFO     | [job] validate thread has finished
[2026-01-10 19:52:40] 2026-01-11 00:52:01,486 | INFO     | [payload] validate_post thread has finished
[2026-01-10 19:52:40] 2026-01-11 00:52:01,579 | INFO     | [data] copytool_in thread has finished
[2026-01-10 19:52:40] 2026-01-11 00:52:01,631 | INFO     | [job] control thread has finished
[2026-01-10 19:52:40] 2026-01-11 00:52:01,733 | INFO     | [data] copytool_out thread has finished
[2026-01-10 19:52:40] 2026-01-11 00:52:01,769 | INFO     | [payload] control thread has finished
[2026-01-10 19:52:40] 2026-01-11 00:52:01,771 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 19:52:40] 2026-01-11 00:52:02,135 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 19:52:40] 2026-01-11 00:52:02,620 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 19:52:40] 2026-01-11 00:52:03,625 | INFO     | [job] queue monitor thread has finished
[2026-01-10 19:52:40] 2026-01-11 00:52:06,141 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 19:52:40] 2026-01-11 00:52:10,730 [wrapper] supervise_pilot (15 min periods counter: 7)
[2026-01-10 19:52:40] 2026-01-11 00:52:30,603 | INFO     | PID=3686884 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 19:52:40] 2026-01-11 00:52:30,604 | INFO     | .. there are 15 such processes running
[2026-01-10 19:52:40] 2026-01-11 00:52:30,604 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 19:52:40] 2026-01-11 00:52:30,605 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 19:52:40] 2026-01-11 00:52:30,605 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 19:52:40] 2026-01-11 00:52:34,220 | INFO     | [monitor] cgroup control has ended
[2026-01-10 19:52:40] 2026-01-11 00:52:35,388 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140215999117120)>', '<ExcThread(monitor, started 140215616255744)>']
[2026-01-10 19:52:40] 2026-01-11 00:52:35,632 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 19:52:40] 2026-01-11 00:52:35,632 | INFO     | [monitor] control thread has ended
[2026-01-10 19:52:40] 2026-01-11 00:52:40,413 | INFO     | all workflow threads have been joined
[2026-01-10 19:52:40] 2026-01-11 00:52:40,413 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 19:52:40] 2026-01-11 00:52:40,413 | INFO     | traces error code: 0
[2026-01-10 19:52:40] 2026-01-11 00:52:40,414 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 19:52:40] 2026-01-11 00:52:40,574 [wrapper] ==== pilot stdout END ====
[2026-01-10 19:52:40] 2026-01-11 00:52:40,577 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 19:52:40] 2026-01-11 00:52:40,580 [wrapper] pilotpid: 3686884
[2026-01-10 19:52:40] 2026-01-11 00:52:40,583 [wrapper] Pilot exit status: 0
[2026-01-10 19:52:40] 2026-01-11 00:52:40,593 [wrapper] pandaids: 6965803271
[2026-01-10 19:52:40] 2026-01-11 00:52:40,684 [wrapper] cleanup supervisor_pilot 4110674 3686885
[2026-01-10 19:52:40] 2026-01-11 00:52:40,688 [wrapper] Test setup, not cleaning
[2026-01-10 19:52:40] 2026-01-11 00:52:40,691 [wrapper] apfmon messages muted
[2026-01-10 19:52:40] 2026-01-11 00:52:40,695 [wrapper] ==== wrapper stdout END ====
[2026-01-10 19:52:40] 2026-01-11 00:52:40,698 [wrapper] ==== wrapper stderr END ====
[2026-01-10 19:52:40]  *** Error codes and diagnostics ***
[2026-01-10 19:52:40]     "exeErrorCode": 0,
[2026-01-10 19:52:40]     "exeErrorDiag": "",
[2026-01-10 19:52:40]     "pilotErrorCode": 0,
[2026-01-10 19:52:40]     "pilotErrorDiag": "",
[2026-01-10 19:52:40]  *** Listing of results directory ***
[2026-01-10 19:52:40] total 435608
[2026-01-10 19:52:40] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 18:00 pilot3.tar.gz
[2026-01-10 19:52:40] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 18:01 queuedata.json
[2026-01-10 19:52:40] -rwx------. 1 boincer umatlas     36322 Jan 10 18:02 runpilot2-wrapper.sh
[2026-01-10 19:52:40] -rw-r--r--. 1 boincer umatlas       100 Jan 10 18:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 19:52:40] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 18:21 run_atlas
[2026-01-10 19:52:40] -rw-r--r--. 1 boincer umatlas       105 Jan 10 18:21 job.xml
[2026-01-10 19:52:40] -rw-r--r--. 2 boincer umatlas 392755774 Jan 10 18:21 EVNT.47962006._000073.pool.root.1
[2026-01-10 19:52:40] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 18:21 start_atlas.sh
[2026-01-10 19:52:40] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 18:21 shared
[2026-01-10 19:52:40] -rw-r--r--. 2 boincer umatlas    592618 Jan 10 18:21 input.tar.gz
[2026-01-10 19:52:40] -rw-r--r--. 1 boincer umatlas         0 Jan 10 18:21 boinc_lockfile
[2026-01-10 19:52:40] -rw-r--r--. 1 boincer umatlas      2890 Jan 10 18:21 pandaJob.out
[2026-01-10 19:52:40] -rw-------. 1 boincer umatlas        57 Jan 10 18:21 setup.sh.local
[2026-01-10 19:52:40] -rw-------. 1 boincer umatlas    989548 Jan 10 18:22 agis_schedconf.cvmfs.json
[2026-01-10 19:52:40] -rw-------. 1 boincer umatlas   1516240 Jan 10 18:22 agis_ddmendpoints.agis.ALL.json
[2026-01-10 19:52:40] drwx------. 5 boincer umatlas      4096 Jan 10 18:22 pilot3
[2026-01-10 19:52:40] -rw-r--r--. 1 boincer umatlas       530 Jan 10 19:45 boinc_task_state.xml
[2026-01-10 19:52:40] -rw-r--r--. 1 boincer umatlas      6958 Jan 10 19:49 init_data.xml
[2026-01-10 19:52:40] -rw-------. 1 boincer umatlas  45402076 Jan 10 19:51 HITS.47962010._002723.pool.root.1
[2026-01-10 19:52:40] -rw-------. 1 boincer umatlas      1034 Jan 10 19:51 memory_monitor_summary.json
[2026-01-10 19:52:40] -rw-------. 1 boincer umatlas   1216171 Jan 10 19:51 log.47962010._002723.job.log.tgz.1
[2026-01-10 19:52:40] -rw-------. 1 boincer umatlas      8549 Jan 10 19:51 heartbeat.json
[2026-01-10 19:52:40] -rw-------. 1 boincer umatlas        95 Jan 10 19:52 pilot_heartbeat.json
[2026-01-10 19:52:40] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 19:52 boinc_mmap_file
[2026-01-10 19:52:40] -rw-r--r--. 1 boincer umatlas        27 Jan 10 19:52 wrapper_checkpoint.txt
[2026-01-10 19:52:40] -rw-------. 1 boincer umatlas      5011 Jan 10 19:52 pilotlog.txt
[2026-01-10 19:52:40] -rw-------. 1 boincer umatlas    777628 Jan 10 19:52 log.47962010._002723.job.log.1
[2026-01-10 19:52:40] -rw-------. 1 boincer umatlas       353 Jan 10 19:52 output.list
[2026-01-10 19:52:40] -rw-r--r--. 1 boincer umatlas       620 Jan 10 19:52 runtime_log
[2026-01-10 19:52:40] -rw-------. 1 boincer umatlas   2017280 Jan 10 19:52 result.tar.gz
[2026-01-10 19:52:40] -rw-r--r--. 1 boincer umatlas      9342 Jan 10 19:52 runtime_log.err
[2026-01-10 19:52:40] -rw-------. 1 boincer umatlas       653 Jan 10 19:52 f76NDmD9wy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmbdhKDmEenyFm.diag
[2026-01-10 19:52:40] -rw-r--r--. 1 boincer umatlas     22026 Jan 10 19:52 stderr.txt
[2026-01-10 19:52:40] HITS file was successfully produced:
[2026-01-10 19:52:40] -rw-------. 1 boincer umatlas 45402076 Jan 10 19:51 shared/HITS.pool.root.1
[2026-01-10 19:52:40]  *** Contents of shared directory: ***
[2026-01-10 19:52:40] total 430460
[2026-01-10 19:52:40] -rw-r--r--. 2 boincer umatlas 392755774 Jan 10 18:21 ATLAS.root_0
[2026-01-10 19:52:40] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 18:21 start_atlas.sh
[2026-01-10 19:52:40] -rw-r--r--. 2 boincer umatlas    592618 Jan 10 18:21 input.tar.gz
[2026-01-10 19:52:40] -rw-------. 1 boincer umatlas  45402076 Jan 10 19:51 HITS.pool.root.1
[2026-01-10 19:52:40] -rw-------. 1 boincer umatlas   2017280 Jan 10 19:52 result.tar.gz
19:52:42 (3680359): run_atlas exited; CPU time 11388.939410
19:52:42 (3680359): called boinc_finish(0)

</stderr_txt>
]]>

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