Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:02:19 (2350287): wrapper (7.7.26015): starting
18:02:19 (2350287): wrapper: running run_atlas (--nthreads 9)
[2026-01-10 18:02:19] Arguments: --nthreads 9
[2026-01-10 18:02:19] Threads: 9
[2026-01-10 18:02:19] Checking for CVMFS
[2026-01-10 18:02:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 18:02:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 18:02:19] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 18:02:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 18:02:20] 2.13.3.0 12763 95438 161972 154994 2 302 21008394 40960001 14788 16776704 0 544075316 99.685 443288890 7370 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 18:02:20] CVMFS is ok
[2026-01-10 18:02:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 18:02:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 18:02:20] Further information can be found at the LHC@home message board.
[2026-01-10 18:02:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 18:02:20] Checking for apptainer binary...
[2026-01-10 18:02:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 18:02:20] Running /usr/bin/apptainer --version
[2026-01-10 18:02:20] apptainer version 1.4.5-2.el9
[2026-01-10 18:02:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 18:02:20] c7-2-17.aglt2.org
[2026-01-10 18:02:20] apptainer works
[2026-01-10 18:02:20] Set ATHENA_PROC_NUMBER=9
[2026-01-10 18:02:20] Set ATHENA_CORE_NUMBER=9
[2026-01-10 18:02:21] Starting ATLAS job with PandaID=6965803067
[2026-01-10 18:02:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:00:03 (2350287): BOINC client no longer exists - exiting
20:00:03 (2350287): timer handler: client dead, exiting
20:11:59 (2669158): wrapper (7.7.26015): starting
20:11:59 (2669158): wrapper: running run_atlas (--nthreads 11)
[2026-01-10 20:11:59] Arguments: --nthreads 11
[2026-01-10 20:11:59] Threads: 11
[2026-01-10 20:11:59] This job has been restarted, cleaning up previous attempt
[2026-01-10 20:11:59] Checking for CVMFS
[2026-01-10 20:12:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 20:12:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 20:12:00] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 20:12:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 20:12:00] 2.13.3.0 12763 95567 157152 154998 1 304 21191690 40960000 14609 16776704 0 544311810 99.685 443293006 7370 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 20:12:00] CVMFS is ok
[2026-01-10 20:12:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 20:12:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 20:12:00] Further information can be found at the LHC@home message board.
[2026-01-10 20:12:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 20:12:00] Checking for apptainer binary...
[2026-01-10 20:12:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 20:12:00] Running /usr/bin/apptainer --version
[2026-01-10 20:12:00] apptainer version 1.4.5-2.el9
[2026-01-10 20:12:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 20:12:00] c7-2-17.aglt2.org
[2026-01-10 20:12:00] apptainer works
[2026-01-10 20:12:00] Set ATHENA_PROC_NUMBER=11
[2026-01-10 20:12:00] Set ATHENA_CORE_NUMBER=11
[2026-01-10 20:12:00] Starting ATLAS job with PandaID=6965803067
[2026-01-10 20:12:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 00:52:46]  *** The last 200 lines of the pilot log: ***
[2026-01-11 00:52:46] 2026-01-11 05:51:42,286 | INFO     | time since job start (16770s) is within the limit (349056.0s)
[2026-01-11 00:52:46] 2026-01-11 05:51:43,512 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-11 00:52:46] 2026-01-11 05:51:43,523 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3336.54590625
[2026-01-11 00:52:46] 2026-01-11 05:51:43,536 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6965803067/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 00:52:46] 2026-01-11 05:51:43,537 | INFO     | extracted standard info from prmon json
[2026-01-11 00:52:46] 2026-01-11 05:51:43,537 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 00:52:46] 2026-01-11 05:51:43,537 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 00:52:46] 2026-01-11 05:51:43,537 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 00:52:46] 2026-01-11 05:51:43,537 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 00:52:46] 2026-01-11 05:51:43,541 | INFO     | fitting pss+swap vs Time
[2026-01-11 00:52:46] 2026-01-11 05:51:43,541 | INFO     | sum of square deviations: 6448718094.909083
[2026-01-11 00:52:46] 2026-01-11 05:51:43,543 | INFO     | sum of deviations: 43727257604.690865
[2026-01-11 00:52:46] 2026-01-11 05:51:43,543 | INFO     | mean x: 1768102320.0181818
[2026-01-11 00:52:46] 2026-01-11 05:51:43,543 | INFO     | mean y: 2615686.061818182
[2026-01-11 00:52:46] 2026-01-11 05:51:43,543 | INFO     | intersect: -11986474933.34703
[2026-01-11 00:52:46] 2026-01-11 05:51:43,543 | INFO     | chi2: 1.8689773241918473
[2026-01-11 00:52:46] 2026-01-11 05:51:43,543 | INFO     | sum of square deviations: 6103327097.407403
[2026-01-11 00:52:46] 2026-01-11 05:51:43,545 | INFO     | sum of deviations: 60792463681.851776
[2026-01-11 00:52:46] 2026-01-11 05:51:43,545 | INFO     | mean x: 1768102167.5185184
[2026-01-11 00:52:46] 2026-01-11 05:51:43,545 | INFO     | mean y: 2623101.5296296296
[2026-01-11 00:52:46] 2026-01-11 05:51:43,545 | INFO     | intersect: -17608637951.533028
[2026-01-11 00:52:46] 2026-01-11 05:51:43,545 | INFO     | chi2: 1.1684018731142392
[2026-01-11 00:52:46] 2026-01-11 05:51:43,545 | INFO     | current chi2=1.1684018731142392 (change=37.48442755347712 %)
[2026-01-11 00:52:46] 2026-01-11 05:51:43,546 | INFO     | sum of square deviations: 5770494474.905688
[2026-01-11 00:52:46] 2026-01-11 05:51:43,547 | INFO     | sum of deviations: 59226330364.67921
[2026-01-11 00:52:46] 2026-01-11 05:51:43,547 | INFO     | mean x: 1768102015.018868
[2026-01-11 00:52:46] 2026-01-11 05:51:43,547 | INFO     | mean y: 2622383.8641509432
[2026-01-11 00:52:46] 2026-01-11 05:51:43,547 | INFO     | intersect: -18144556253.140602
[2026-01-11 00:52:46] 2026-01-11 05:51:43,548 | INFO     | chi2: 1.1683416474430561
[2026-01-11 00:52:46] 2026-01-11 05:51:43,548 | INFO     | current chi2=1.1683416474430561 (change=0.005154533946654706 %)
[2026-01-11 00:52:46] 2026-01-11 05:51:43,548 | INFO     | right removable region: 264
[2026-01-11 00:52:46] 2026-01-11 05:51:43,548 | INFO     | sum of square deviations: 6103324047.407403
[2026-01-11 00:52:46] 2026-01-11 05:51:43,550 | INFO     | sum of deviations: 7039221386.8888855
[2026-01-11 00:52:46] 2026-01-11 05:51:43,550 | INFO     | mean x: 1768102472.5185184
[2026-01-11 00:52:46] 2026-01-11 05:51:43,550 | INFO     | mean y: 2631737.422222222
[2026-01-11 00:52:46] 2026-01-11 05:51:43,550 | INFO     | intersect: -2036595516.7902372
[2026-01-11 00:52:46] 2026-01-11 05:51:43,550 | INFO     | chi2: 0.7221609754648863
[2026-01-11 00:52:46] 2026-01-11 05:51:43,550 | INFO     | current chi2=0.7221609754648863 (change=61.36063471090259 %)
[2026-01-11 00:52:46] 2026-01-11 05:51:43,550 | INFO     | sum of square deviations: 5770488374.905688
[2026-01-11 00:52:46] 2026-01-11 05:51:43,552 | INFO     | sum of deviations: 2294817186.8113136
[2026-01-11 00:52:46] 2026-01-11 05:51:43,552 | INFO     | mean x: 1768102625.018868
[2026-01-11 00:52:46] 2026-01-11 05:51:43,552 | INFO     | mean y: 2633909.437735849
[2026-01-11 00:52:46] 2026-01-11 05:51:43,552 | INFO     | intersect: -700508013.4512107
[2026-01-11 00:52:46] 2026-01-11 05:51:43,552 | INFO     | chi2: 0.7154713931214788
[2026-01-11 00:52:46] 2026-01-11 05:51:43,552 | INFO     | current chi2=0.7154713931214788 (change=0.9263284185497809 %)
[2026-01-11 00:52:46] 2026-01-11 05:51:43,552 | INFO     | left removable region: 20
[2026-01-11 00:52:46] 2026-01-11 05:51:43,553 | INFO     | sum of square deviations: 4504474244.897529
[2026-01-11 00:52:46] 2026-01-11 05:51:43,554 | INFO     | sum of deviations: 13614684700.504105
[2026-01-11 00:52:46] 2026-01-11 05:51:43,554 | INFO     | mean x: 1768102594.5204918
[2026-01-11 00:52:46] 2026-01-11 05:51:43,554 | INFO     | mean y: 2644119.799180328
[2026-01-11 00:52:46] 2026-01-11 05:51:43,554 | INFO     | intersect: -5341411153.645361
[2026-01-11 00:52:46] 2026-01-11 05:51:43,554 | INFO     | chi2: 0.0028173994477383875
[2026-01-11 00:52:46] 2026-01-11 05:51:43,554 | INFO     | current memory leak: 3.02 B/s (using 244 data points, chi2=0.00)
[2026-01-11 00:52:46] 2026-01-11 05:51:43,555 | INFO     | could have reported an average CPU frequency of 3252 MHz (13 samples)
[2026-01-11 00:52:46] 2026-01-11 05:51:43,555 | INFO     | ..............................
[2026-01-11 00:52:46] 2026-01-11 05:51:43,555 | INFO     | . Timing measurements:
[2026-01-11 00:52:46] 2026-01-11 05:51:43,555 | INFO     | . get job = 0 s
[2026-01-11 00:52:46] 2026-01-11 05:51:43,555 | INFO     | . initial setup = 1 s
[2026-01-11 00:52:46] 2026-01-11 05:51:43,555 | INFO     | . payload setup = 7 s
[2026-01-11 00:52:46] 2026-01-11 05:51:43,555 | INFO     | . stage-in = 0 s
[2026-01-11 00:52:46] 2026-01-11 05:51:43,555 | INFO     | . payload execution = 16732 s
[2026-01-11 00:52:46] 2026-01-11 05:51:43,555 | INFO     | . stage-out = 1 s
[2026-01-11 00:52:46] 2026-01-11 05:51:43,555 | INFO     | . log creation = 0 s
[2026-01-11 00:52:46] 2026-01-11 05:51:43,555 | INFO     | ..............................
[2026-01-11 00:52:46] 2026-01-11 05:51:43,783 | INFO     | 
[2026-01-11 00:52:46] 2026-01-11 05:51:43,783 | INFO     | job summary report
[2026-01-11 00:52:46] 2026-01-11 05:51:43,783 | INFO     | --------------------------------------------------
[2026-01-11 00:52:46] 2026-01-11 05:51:43,783 | INFO     | PanDA job id: 6965803067
[2026-01-11 00:52:46] 2026-01-11 05:51:43,784 | INFO     | task id: 47898826
[2026-01-11 00:52:46] 2026-01-11 05:51:43,784 | INFO     | errors: (none)
[2026-01-11 00:52:46] 2026-01-11 05:51:43,784 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 00:52:46] 2026-01-11 05:51:43,784 | INFO     | pilot state: finished 
[2026-01-11 00:52:46] 2026-01-11 05:51:43,784 | INFO     | transexitcode: 0
[2026-01-11 00:52:46] 2026-01-11 05:51:43,784 | INFO     | exeerrorcode: 0
[2026-01-11 00:52:46] 2026-01-11 05:51:43,784 | INFO     | exeerrordiag: 
[2026-01-11 00:52:46] 2026-01-11 05:51:43,784 | INFO     | exitcode: 0
[2026-01-11 00:52:46] 2026-01-11 05:51:43,784 | INFO     | exitmsg: OK
[2026-01-11 00:52:46] 2026-01-11 05:51:43,784 | INFO     | cpuconsumptiontime: 43900 s
[2026-01-11 00:52:46] 2026-01-11 05:51:43,784 | INFO     | nevents: 400
[2026-01-11 00:52:46] 2026-01-11 05:51:43,784 | INFO     | neventsw: 0
[2026-01-11 00:52:46] 2026-01-11 05:51:43,784 | INFO     | pid: 2699903
[2026-01-11 00:52:46] 2026-01-11 05:51:43,784 | INFO     | pgrp: 2699903
[2026-01-11 00:52:46] 2026-01-11 05:51:43,784 | INFO     | corecount: 11
[2026-01-11 00:52:46] 2026-01-11 05:51:43,784 | INFO     | event service: False
[2026-01-11 00:52:46] 2026-01-11 05:51:43,784 | INFO     | sizes: {0: 2283920, 5: 2284182, 11: 2284238, 16744: 2316140, 16746: 2325138, 16747: 2325194, 16756: 2325544}
[2026-01-11 00:52:46] 2026-01-11 05:51:43,785 | INFO     | --------------------------------------------------
[2026-01-11 00:52:46] 2026-01-11 05:51:43,785 | INFO     | 
[2026-01-11 00:52:46] 2026-01-11 05:51:43,785 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-11 00:52:46] 2026-01-11 05:51:43,819 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 00:52:46] 2026-01-11 05:51:43,819 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 00:52:46] 2026-01-11 05:51:43,819 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 00:52:46] 2026-01-11 05:51:43,819 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 00:52:46] 2026-01-11 05:51:43,819 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 00:52:46] 2026-01-11 05:51:43,819 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 00:52:46] 2026-01-11 05:51:43,819 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 00:52:46] 2026-01-11 05:51:43,819 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 00:52:46] 2026-01-11 05:51:43,819 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 00:52:46] 2026-01-11 05:51:43,819 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 00:52:46] 2026-01-11 05:51:43,819 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 00:52:46] 2026-01-11 05:51:43,819 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 00:52:46] 2026-01-11 05:51:43,819 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 00:52:46] 2026-01-11 05:51:43,820 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 00:52:46] 2026-01-11 05:51:43,820 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 00:52:46] 2026-01-11 05:51:43,820 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 00:52:46] 2026-01-11 05:51:43,820 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 00:52:46] 2026-01-11 05:51:43,820 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 00:52:46] 2026-01-11 05:51:43,820 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 00:52:46] 2026-01-11 05:51:43,820 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 00:52:46] 2026-01-11 05:51:43,820 | INFO     | job 6965803067 has completed (purged errors)
[2026-01-11 00:52:46] 2026-01-11 05:51:43,820 | INFO     | overall cleanup function is called
[2026-01-11 00:52:46] 2026-01-11 05:51:44,829 | INFO     | --- collectZombieJob: --- 10, [2699903]
[2026-01-11 00:52:46] 2026-01-11 05:51:44,829 | INFO     | zombie collector waiting for pid 2699903
[2026-01-11 00:52:46] 2026-01-11 05:51:44,830 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 00:52:46] 2026-01-11 05:51:44,830 | INFO     | collected zombie processes
[2026-01-11 00:52:46] 2026-01-11 05:51:44,830 | INFO     | will attempt to kill all subprocesses of pid=2699903
[2026-01-11 00:52:46] 2026-01-11 05:51:45,209 | INFO     | process IDs to be killed: [2699903] (in reverse order)
[2026-01-11 00:52:46] 2026-01-11 05:51:45,318 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 00:52:46] 2026-01-11 05:51:45,318 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 00:52:46] 2026-01-11 05:51:45,333 | INFO     | did not find any defunct processes belonging to 2699903
[2026-01-11 00:52:46] 2026-01-11 05:51:45,348 | INFO     | did not find any defunct processes belonging to 2699903
[2026-01-11 00:52:46] 2026-01-11 05:51:45,348 | INFO     | ready for new job
[2026-01-11 00:52:46] 2026-01-11 05:51:45,348 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 00:52:46] 2026-01-11 05:51:45,350 | INFO     | ***************************************
[2026-01-11 00:52:46] 2026-01-11 05:51:45,350 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 00:52:46] 2026-01-11 05:51:45,350 | INFO     | ***************************************
[2026-01-11 00:52:46] 2026-01-11 05:51:45,350 | INFO     | 
[2026-01-11 00:52:46] 2026-01-11 05:51:45,354 | INFO     | architecture information:
[2026-01-11 00:52:46] 2026-01-11 05:51:45,354 | INFO     | executing command: cat /etc/os-release
[2026-01-11 00:52:46] 2026-01-11 05:51:45,369 | INFO     | cat /etc/os-release:
[2026-01-11 00:52:46] NAME="CentOS Linux"
[2026-01-11 00:52:46] VERSION="7 (Core)"
[2026-01-11 00:52:46] ID="centos"
[2026-01-11 00:52:46] ID_LIKE="rhel fedora"
[2026-01-11 00:52:46] VERSION_ID="7"
[2026-01-11 00:52:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 00:52:46] ANSI_COLOR="0;31"
[2026-01-11 00:52:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 00:52:46] HOME_URL="https://www.centos.org/"
[2026-01-11 00:52:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 00:52:46] 
[2026-01-11 00:52:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 00:52:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 00:52:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 00:52:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 00:52:46] 
[2026-01-11 00:52:46] 2026-01-11 05:51:45,369 | INFO     | ***************************************
[2026-01-11 00:52:46] 2026-01-11 05:51:45,871 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-11 00:52:46] 2026-01-11 05:51:45,889 | INFO     | sufficient remaining disk space (127141937152 B)
[2026-01-11 00:52:46] 2026-01-11 05:51:45,890 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 00:52:46] 2026-01-11 05:51:45,890 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 00:52:46] 2026-01-11 05:51:45,890 | INFO     | update_server=False
[2026-01-11 00:52:46] 2026-01-11 05:51:45,890 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 00:52:46] 2026-01-11 05:51:45,890 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 00:52:46] 2026-01-11 05:51:45,890 | INFO     | aborting loop
[2026-01-11 00:52:46] 2026-01-11 05:51:45,890 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 00:52:46] 2026-01-11 05:51:46,289 | INFO     | all data control threads have been joined
[2026-01-11 00:52:46] 2026-01-11 05:51:46,656 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 00:52:46] 2026-01-11 05:51:46,895 | INFO     | [job] retrieve thread has finished
[2026-01-11 00:52:46] 2026-01-11 05:51:46,896 | INFO     | [job] job monitor thread has finished
[2026-01-11 00:52:46] 2026-01-11 05:51:46,945 | INFO     | all job control threads have been joined
[2026-01-11 00:52:46] 2026-01-11 05:51:47,097 | INFO     | [payload] validate_post thread has finished
[2026-01-11 00:52:46] 2026-01-11 05:51:47,108 | INFO     | all payload control threads have been joined
[2026-01-11 00:52:46] 2026-01-11 05:51:47,256 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 00:52:46] 2026-01-11 05:51:47,257 | INFO     | [data] copytool_in thread has finished
[2026-01-11 00:52:46] 2026-01-11 05:51:47,296 | INFO     | [data] control thread has finished
[2026-01-11 00:52:46] 2026-01-11 05:51:47,337 | INFO     | [job] validate thread has finished
[2026-01-11 00:52:46] 2026-01-11 05:51:47,384 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 00:52:46] 2026-01-11 05:51:47,598 | INFO     | [payload] failed_post thread has finished
[2026-01-11 00:52:46] 2026-01-11 05:51:47,650 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 00:52:46] 2026-01-11 05:51:47,951 | INFO     | [job] control thread has finished
[2026-01-11 00:52:46] 2026-01-11 05:51:48,117 | INFO     | [payload] control thread has finished
[2026-01-11 00:52:46] 2026-01-11 05:51:48,662 | INFO     | [data] copytool_out thread has finished
[2026-01-11 00:52:46] 2026-01-11 05:51:48,707 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 00:52:46] 2026-01-11 05:51:49,712 | INFO     | [job] queue monitor thread has finished
[2026-01-11 00:52:46] 2026-01-11 05:51:49,898 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 00:52:46] 2026-01-11 05:51:56,648 | INFO     | job.realtimelogging is not enabled
[2026-01-11 00:52:46] 2026-01-11 05:51:57,654 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 00:52:46] 2026-01-11 05:52:15,758 | INFO     | PID=2680610 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 00:52:46] 2026-01-11 05:52:15,759 | INFO     | .. there are 14 such processes running
[2026-01-11 00:52:46] 2026-01-11 05:52:15,759 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 00:52:46] 2026-01-11 05:52:15,759 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 00:52:46] 2026-01-11 05:52:15,759 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 00:52:46] 2026-01-11 05:52:40,735 | INFO     | [monitor] cgroup control has ended
[2026-01-11 00:52:46] 2026-01-11 05:52:41,219 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139802231801664)>', '<ExcThread(monitor, started 139801881716480)>']
[2026-01-11 00:52:46] 2026-01-11 05:52:41,905 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 00:52:46] 2026-01-11 05:52:41,905 | INFO     | [monitor] control thread has ended
[2026-01-11 00:52:46] 2026-01-11 05:52:46,245 | INFO     | all workflow threads have been joined
[2026-01-11 00:52:46] 2026-01-11 05:52:46,255 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 00:52:46] 2026-01-11 05:52:46,255 | INFO     | traces error code: 0
[2026-01-11 00:52:46] 2026-01-11 05:52:46,255 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 00:52:46] 2026-01-11 05:52:46,345 [wrapper] ==== pilot stdout END ====
[2026-01-11 00:52:46] 2026-01-11 05:52:46,350 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 00:52:46] 2026-01-11 05:52:46,352 [wrapper] pilotpid: 2680610
[2026-01-11 00:52:46] 2026-01-11 05:52:46,355 [wrapper] Pilot exit status: 0
[2026-01-11 00:52:46] 2026-01-11 05:52:46,370 [wrapper] pandaids: 6965803067 6965803067
[2026-01-11 00:52:46] 2026-01-11 05:52:46,450 [wrapper] cleanup supervisor_pilot 3308456 2680611
[2026-01-11 00:52:46] 2026-01-11 05:52:46,454 [wrapper] Test setup, not cleaning
[2026-01-11 00:52:46] 2026-01-11 05:52:46,457 [wrapper] apfmon messages muted
[2026-01-11 00:52:46] 2026-01-11 05:52:46,459 [wrapper] ==== wrapper stdout END ====
[2026-01-11 00:52:46] 2026-01-11 05:52:46,462 [wrapper] ==== wrapper stderr END ====
[2026-01-11 00:52:46]  *** Error codes and diagnostics ***
[2026-01-11 00:52:46]     "exeErrorCode": 0,
[2026-01-11 00:52:46]     "exeErrorDiag": "",
[2026-01-11 00:52:46]     "pilotErrorCode": 0,
[2026-01-11 00:52:46]     "pilotErrorDiag": "",
[2026-01-11 00:52:46]  *** Listing of results directory ***
[2026-01-11 00:52:46] total 663444
[2026-01-11 00:52:46] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-11 00:52:46] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 18:00 queuedata.json
[2026-01-11 00:52:46] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 18:00 pilot3.tar.gz
[2026-01-11 00:52:46] -rwx------. 1 boincer umatlas     36322 Jan 10 18:00 runpilot2-wrapper.sh
[2026-01-11 00:52:46] -rw-r--r--. 1 boincer umatlas       100 Jan 10 18:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 00:52:46] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 18:02 run_atlas
[2026-01-11 00:52:46] -rw-r--r--. 1 boincer umatlas       105 Jan 10 18:02 job.xml
[2026-01-11 00:52:46] -rw-r--r--. 3 boincer umatlas 225680012 Jan 10 18:02 EVNT.47898824._001410.pool.root.1
[2026-01-11 00:52:46] -rw-r--r--. 3 boincer umatlas 225680012 Jan 10 18:02 ATLAS.root_0
[2026-01-11 00:52:46] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 18:02 start_atlas.sh
[2026-01-11 00:52:46] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 18:02 shared
[2026-01-11 00:52:46] -rw-r--r--. 2 boincer umatlas    592406 Jan 10 18:02 input.tar.gz
[2026-01-11 00:52:46] -rw-r--r--. 1 boincer umatlas         0 Jan 10 18:02 boinc_lockfile
[2026-01-11 00:52:46] -rw-r--r--. 1 boincer umatlas      2519 Jan 10 20:12 pandaJob.out
[2026-01-11 00:52:46] -rw-------. 1 boincer umatlas        57 Jan 10 20:12 setup.sh.local
[2026-01-11 00:52:46] -rw-------. 1 boincer umatlas    989540 Jan 10 20:12 agis_schedconf.cvmfs.json
[2026-01-11 00:52:46] -rw-r--r--. 1 boincer umatlas      6946 Jan 11 00:49 init_data.xml
[2026-01-11 00:52:46] -rw-------. 1 boincer umatlas 218535215 Jan 11 00:51 HITS.47898826._040674.pool.root.1
[2026-01-11 00:52:46] -rw-r--r--. 1 boincer umatlas       531 Jan 11 00:51 boinc_task_state.xml
[2026-01-11 00:52:46] -rw-------. 1 boincer umatlas      1038 Jan 11 00:51 memory_monitor_summary.json
[2026-01-11 00:52:46] -rw-------. 1 boincer umatlas   1516240 Jan 11 00:51 agis_ddmendpoints.agis.ALL.json
[2026-01-11 00:52:46] -rw-------. 1 boincer umatlas    533750 Jan 11 00:51 log.47898826._040674.job.log.tgz.1
[2026-01-11 00:52:46] -rw-------. 1 boincer umatlas      7780 Jan 11 00:51 heartbeat.json
[2026-01-11 00:52:46] -rw-------. 1 boincer umatlas        96 Jan 11 00:52 pilot_heartbeat.json
[2026-01-11 00:52:46] -rw-r--r--. 1 boincer umatlas      8192 Jan 11 00:52 boinc_mmap_file
[2026-01-11 00:52:46] -rw-r--r--. 1 boincer umatlas        28 Jan 11 00:52 wrapper_checkpoint.txt
[2026-01-11 00:52:46] -rw-------. 1 boincer umatlas      4897 Jan 11 00:52 pilotlog.txt
[2026-01-11 00:52:46] -rw-------. 1 boincer umatlas   2242907 Jan 11 00:52 log.47898826._040674.job.log.1
[2026-01-11 00:52:46] -rw-------. 1 boincer umatlas       357 Jan 11 00:52 output.list
[2026-01-11 00:52:46] -rw-r--r--. 1 boincer umatlas       620 Jan 11 00:52 runtime_log
[2026-01-11 00:52:46] -rw-------. 1 boincer umatlas   2795520 Jan 11 00:52 result.tar.gz
[2026-01-11 00:52:46] -rw-------. 1 boincer umatlas       782 Jan 11 00:52 UxHODm67wy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmVchKDm2hDnYm.diag
[2026-01-11 00:52:46] -rw-r--r--. 1 boincer umatlas      9425 Jan 11 00:52 runtime_log.err
[2026-01-11 00:52:46] -rw-r--r--. 1 boincer umatlas     23434 Jan 11 00:52 stderr.txt
[2026-01-11 00:52:46] HITS file was successfully produced:
[2026-01-11 00:52:46] -rw-------. 1 boincer umatlas 218535215 Jan 11 00:51 shared/HITS.pool.root.1
[2026-01-11 00:52:46]  *** Contents of shared directory: ***
[2026-01-11 00:52:46] total 437140
[2026-01-11 00:52:46] -rw-r--r--. 3 boincer umatlas 225680012 Jan 10 18:02 ATLAS.root_0
[2026-01-11 00:52:46] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 18:02 start_atlas.sh
[2026-01-11 00:52:46] -rw-r--r--. 2 boincer umatlas    592406 Jan 10 18:02 input.tar.gz
[2026-01-11 00:52:46] -rw-------. 1 boincer umatlas 218535215 Jan 11 00:51 HITS.pool.root.1
[2026-01-11 00:52:46] -rw-------. 1 boincer umatlas   2795520 Jan 11 00:52 result.tar.gz
00:52:48 (2669158): run_atlas exited; CPU time 44422.399852
00:52:48 (2669158): called boinc_finish(0)

</stderr_txt>
]]>

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