Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:10:04 (13062): wrapper (7.7.26015): starting
12:10:04 (13062): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 12:10:04] Arguments: --nthreads 12
[2026-01-10 12:10:04] Threads: 12
[2026-01-10 12:10:04] Checking for CVMFS
[2026-01-10 12:10:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 12:10:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 12:10:04] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 12:10:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 12:10:04] 2.11.2.0 2998 352717 97912 154986 3 1 14910917 20275200 1 130560 1 148301124 99.952 21016615 16667 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 12:10:04] CVMFS is ok
[2026-01-10 12:10:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 12:10:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 12:10:04] Further information can be found at the LHC@home message board.
[2026-01-10 12:10:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 12:10:04] Checking for apptainer binary...
[2026-01-10 12:10:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 12:10:04] Running /usr/bin/apptainer --version
[2026-01-10 12:10:04] apptainer version 1.3.2-1.el7
[2026-01-10 12:10:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 12:10:06] c-205-25.aglt2.org
[2026-01-10 12:10:06] apptainer works
[2026-01-10 12:10:06] Set ATHENA_PROC_NUMBER=12
[2026-01-10 12:10:06] Set ATHENA_CORE_NUMBER=12
[2026-01-10 12:10:06] Starting ATLAS job with PandaID=6963161367
[2026-01-10 12:10:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 13:50:37]  *** The last 200 lines of the pilot log: ***
[2026-01-10 13:50:37]  protocol_id=None
[2026-01-10 13:50:37]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-10 13:50:37]  replicas=None
[2026-01-10 13:50:37]  scope=mc23_13p6TeV
[2026-01-10 13:50:37]  status=None
[2026-01-10 13:50:37]  status_code=0
[2026-01-10 13:50:37]  storage_token=
[2026-01-10 13:50:37]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6963161367/log.47898826._033076.job.log.tgz.1
[2026-01-10 13:50:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ac/01/log.47898826._033076.job.log.tgz.1
[2026-01-10 13:50:37]  workdir=None
[2026-01-10 13:50:37] ]
[2026-01-10 13:50:37] 2026-01-10 18:49:34,067 | INFO     | transferring file log.47898826._033076.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6963161367/log.47898826._033076.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-10 13:50:37] 2026-01-10 18:49:34,067 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6963161367/log.47898826._033076.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898826._033076.job
[2026-01-10 13:50:37] 2026-01-10 18:49:34,088 | INFO     | adding to output.list: log.47898826._033076.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ac/01/log.47898826._033076.job.log.tg
[2026-01-10 13:50:37] 2026-01-10 18:49:34,088 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 13:50:37] 2026-01-10 18:49:34,089 | INFO     | summary of transferred files:
[2026-01-10 13:50:37] 2026-01-10 18:49:34,089 | INFO     |  -- lfn=log.47898826._033076.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 13:50:37] 2026-01-10 18:49:34,089 | INFO     | stage-out finished correctly
[2026-01-10 13:50:37] 2026-01-10 18:49:35,726 | INFO     | time since job start (5954s) is within the limit (349056.0s)
[2026-01-10 13:50:37] 2026-01-10 18:49:35,840 | INFO     | monitor loop #442: job 0:6963161367 is in state 'finished'
[2026-01-10 13:50:37] 2026-01-10 18:49:35,841 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 13:50:37] 2026-01-10 18:49:36,561 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 13:50:37] 2026-01-10 18:49:36,638 | INFO     | job 6963161367 has state=finished
[2026-01-10 13:50:37] 2026-01-10 18:49:36,638 | INFO     | preparing for final server update for job 6963161367 in state='finished'
[2026-01-10 13:50:37] 2026-01-10 18:49:36,639 | INFO     | this job has now completed (state=finished)
[2026-01-10 13:50:37] 2026-01-10 18:49:36,639 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 13:50:37] 2026-01-10 18:49:36,639 | INFO     | log transfer has been attempted: DONE
[2026-01-10 13:50:37] 2026-01-10 18:49:36,640 | INFO     | job 6963161367 has finished - writing final server update
[2026-01-10 13:50:37] 2026-01-10 18:49:36,640 | INFO     | total number of processed events: 400 (read)
[2026-01-10 13:50:37] 2026-01-10 18:49:36,641 | INFO     | executing command: lscpu
[2026-01-10 13:50:37] 2026-01-10 18:49:36,666 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 13:50:37] 2026-01-10 18:49:37,732 | INFO     | time since job start (5956s) is within the limit (349056.0s)
[2026-01-10 13:50:37] 2026-01-10 18:49:38,388 | INFO     | monitor loop #443: job 0:6963161367 is in state 'finished'
[2026-01-10 13:50:37] 2026-01-10 18:49:38,388 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 13:50:37] 2026-01-10 18:49:39,738 | INFO     | time since job start (5958s) is within the limit (349056.0s)
[2026-01-10 13:50:37] 2026-01-10 18:49:40,858 | INFO     | PID=16742 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 13:50:37] 2026-01-10 18:49:40,891 | INFO     | monitor loop #444: job 0:6963161367 is in state 'finished'
[2026-01-10 13:50:37] 2026-01-10 18:49:40,891 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 13:50:37] 2026-01-10 18:49:41,859 | INFO     | time since job start (5960s) is within the limit (349056.0s)
[2026-01-10 13:50:37] 2026-01-10 18:49:42,352 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-10 13:50:37] 2026-01-10 18:49:42,356 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2026-01-10 13:50:37] 2026-01-10 18:49:42,358 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963161367/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 13:50:37] 2026-01-10 18:49:42,359 | INFO     | extracted standard info from prmon json
[2026-01-10 13:50:37] 2026-01-10 18:49:42,359 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 13:50:37] 2026-01-10 18:49:42,359 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 13:50:37] 2026-01-10 18:49:42,360 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 13:50:37] 2026-01-10 18:49:42,360 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 13:50:37] 2026-01-10 18:49:42,362 | INFO     | fitting pss+swap vs Time
[2026-01-10 13:50:37] 2026-01-10 18:49:42,363 | INFO     | sum of square deviations: 233641590.0
[2026-01-10 13:50:37] 2026-01-10 18:49:42,363 | INFO     | sum of deviations: 4891988207.999999
[2026-01-10 13:50:37] 2026-01-10 18:49:42,363 | INFO     | mean x: 1768068100.0
[2026-01-10 13:50:37] 2026-01-10 18:49:42,364 | INFO     | mean y: 2677744.2197802197
[2026-01-10 13:50:37] 2026-01-10 18:49:42,364 | INFO     | intersect: -37017136648.162
[2026-01-10 13:50:37] 2026-01-10 18:49:42,364 | INFO     | chi2: 0.1341821746305555
[2026-01-10 13:50:37] 2026-01-10 18:49:42,364 | INFO     | current memory leak: 20.94 B/s (using 91 data points, chi2=0.13)
[2026-01-10 13:50:37] 2026-01-10 18:49:42,365 | INFO     | could have reported an average CPU frequency of 2117 MHz (7 samples)
[2026-01-10 13:50:37] 2026-01-10 18:49:42,365 | INFO     | ..............................
[2026-01-10 13:50:37] 2026-01-10 18:49:42,365 | INFO     | . Timing measurements:
[2026-01-10 13:50:37] 2026-01-10 18:49:42,365 | INFO     | . get job = 0 s
[2026-01-10 13:50:37] 2026-01-10 18:49:42,365 | INFO     | . initial setup = 2 s
[2026-01-10 13:50:37] 2026-01-10 18:49:42,365 | INFO     | . payload setup = 7 s
[2026-01-10 13:50:37] 2026-01-10 18:49:42,365 | INFO     | . stage-in = 0 s
[2026-01-10 13:50:37] 2026-01-10 18:49:42,365 | INFO     | . payload execution = 5925 s
[2026-01-10 13:50:37] 2026-01-10 18:49:42,365 | INFO     | . stage-out = 0 s
[2026-01-10 13:50:37] 2026-01-10 18:49:42,366 | INFO     | . log creation = 0 s
[2026-01-10 13:50:37] 2026-01-10 18:49:42,366 | INFO     | ..............................
[2026-01-10 13:50:37] 2026-01-10 18:49:42,445 | INFO     | 
[2026-01-10 13:50:37] 2026-01-10 18:49:42,445 | INFO     | job summary report
[2026-01-10 13:50:37] 2026-01-10 18:49:42,445 | INFO     | --------------------------------------------------
[2026-01-10 13:50:37] 2026-01-10 18:49:42,445 | INFO     | PanDA job id: 6963161367
[2026-01-10 13:50:37] 2026-01-10 18:49:42,446 | INFO     | task id: 47898826
[2026-01-10 13:50:37] 2026-01-10 18:49:42,446 | INFO     | errors: (none)
[2026-01-10 13:50:37] 2026-01-10 18:49:42,446 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 13:50:37] 2026-01-10 18:49:42,446 | INFO     | pilot state: finished 
[2026-01-10 13:50:37] 2026-01-10 18:49:42,446 | INFO     | transexitcode: 0
[2026-01-10 13:50:37] 2026-01-10 18:49:42,446 | INFO     | exeerrorcode: 0
[2026-01-10 13:50:37] 2026-01-10 18:49:42,447 | INFO     | exeerrordiag: 
[2026-01-10 13:50:37] 2026-01-10 18:49:42,447 | INFO     | exitcode: 0
[2026-01-10 13:50:37] 2026-01-10 18:49:42,447 | INFO     | exitmsg: OK
[2026-01-10 13:50:37] 2026-01-10 18:49:42,447 | INFO     | cpuconsumptiontime: 64542 s
[2026-01-10 13:50:37] 2026-01-10 18:49:42,447 | INFO     | nevents: 400
[2026-01-10 13:50:37] 2026-01-10 18:49:42,447 | INFO     | neventsw: 0
[2026-01-10 13:50:37] 2026-01-10 18:49:42,447 | INFO     | pid: 23109
[2026-01-10 13:50:37] 2026-01-10 18:49:42,448 | INFO     | pgrp: 23109
[2026-01-10 13:50:37] 2026-01-10 18:49:42,448 | INFO     | corecount: 12
[2026-01-10 13:50:37] 2026-01-10 18:49:42,448 | INFO     | event service: False
[2026-01-10 13:50:37] 2026-01-10 18:49:42,448 | INFO     | sizes: {0: 2283798, 1: 2283997, 6: 2284259, 11: 2284287, 5936: 2310982, 5937: 2319980, 5940: 2320164, 5946: 2320358}
[2026-01-10 13:50:37] 2026-01-10 18:49:42,448 | INFO     | --------------------------------------------------
[2026-01-10 13:50:37] 2026-01-10 18:49:42,448 | INFO     | 
[2026-01-10 13:50:37] 2026-01-10 18:49:42,449 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-10 13:50:37] 2026-01-10 18:49:42,470 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 13:50:37] 2026-01-10 18:49:42,471 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 13:50:37] 2026-01-10 18:49:42,471 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 13:50:37] 2026-01-10 18:49:42,471 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 13:50:37] 2026-01-10 18:49:42,471 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 13:50:37] 2026-01-10 18:49:42,472 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 13:50:37] 2026-01-10 18:49:42,472 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 13:50:37] 2026-01-10 18:49:42,472 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 13:50:37] 2026-01-10 18:49:42,472 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 13:50:37] 2026-01-10 18:49:42,472 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 13:50:37] 2026-01-10 18:49:42,472 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 13:50:37] 2026-01-10 18:49:42,473 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 13:50:37] 2026-01-10 18:49:42,473 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 13:50:37] 2026-01-10 18:49:42,473 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 13:50:37] 2026-01-10 18:49:42,473 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 13:50:37] 2026-01-10 18:49:42,473 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 13:50:37] 2026-01-10 18:49:42,473 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 13:50:37] 2026-01-10 18:49:42,474 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 13:50:37] 2026-01-10 18:49:42,474 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 13:50:37] 2026-01-10 18:49:42,474 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 13:50:37] 2026-01-10 18:49:42,474 | INFO     | job 6963161367 has completed (purged errors)
[2026-01-10 13:50:37] 2026-01-10 18:49:42,474 | INFO     | overall cleanup function is called
[2026-01-10 13:50:37] 2026-01-10 18:49:43,482 | INFO     | --- collectZombieJob: --- 10, [23109]
[2026-01-10 13:50:37] 2026-01-10 18:49:43,482 | INFO     | zombie collector waiting for pid 23109
[2026-01-10 13:50:37] 2026-01-10 18:49:43,482 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 13:50:37] 2026-01-10 18:49:43,483 | INFO     | collected zombie processes
[2026-01-10 13:50:37] 2026-01-10 18:49:43,483 | INFO     | will attempt to kill all subprocesses of pid=23109
[2026-01-10 13:50:37] 2026-01-10 18:49:43,573 | INFO     | process IDs to be killed: [23109] (in reverse order)
[2026-01-10 13:50:37] 2026-01-10 18:49:43,622 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 13:50:37] 2026-01-10 18:49:43,622 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 13:50:37] 2026-01-10 18:49:43,626 | INFO     | did not find any defunct processes belonging to 23109
[2026-01-10 13:50:37] 2026-01-10 18:49:43,629 | INFO     | did not find any defunct processes belonging to 23109
[2026-01-10 13:50:37] 2026-01-10 18:49:43,629 | INFO     | ready for new job
[2026-01-10 13:50:37] 2026-01-10 18:49:43,629 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 13:50:37] 2026-01-10 18:49:43,631 | INFO     | ***************************************
[2026-01-10 13:50:37] 2026-01-10 18:49:43,631 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 13:50:37] 2026-01-10 18:49:43,631 | INFO     | ***************************************
[2026-01-10 13:50:37] 2026-01-10 18:49:43,631 | INFO     | 
[2026-01-10 13:50:37] 2026-01-10 18:49:43,632 | INFO     | architecture information:
[2026-01-10 13:50:37] 2026-01-10 18:49:43,633 | INFO     | executing command: cat /etc/os-release
[2026-01-10 13:50:37] 2026-01-10 18:49:43,649 | INFO     | cat /etc/os-release:
[2026-01-10 13:50:37] NAME="CentOS Linux"
[2026-01-10 13:50:37] VERSION="7 (Core)"
[2026-01-10 13:50:37] ID="centos"
[2026-01-10 13:50:37] ID_LIKE="rhel fedora"
[2026-01-10 13:50:37] VERSION_ID="7"
[2026-01-10 13:50:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 13:50:37] ANSI_COLOR="0;31"
[2026-01-10 13:50:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 13:50:37] HOME_URL="https://www.centos.org/"
[2026-01-10 13:50:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 13:50:37] 
[2026-01-10 13:50:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 13:50:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 13:50:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 13:50:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 13:50:37] 
[2026-01-10 13:50:37] 2026-01-10 18:49:43,649 | INFO     | ***************************************
[2026-01-10 13:50:37] 2026-01-10 18:49:44,152 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-10 13:50:37] 2026-01-10 18:49:44,169 | INFO     | sufficient remaining disk space (29313990656 B)
[2026-01-10 13:50:37] 2026-01-10 18:49:44,169 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 13:50:37] 2026-01-10 18:49:44,170 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 13:50:37] 2026-01-10 18:49:44,170 | INFO     | update_server=False
[2026-01-10 13:50:37] 2026-01-10 18:49:44,170 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 13:50:37] 2026-01-10 18:49:44,170 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 13:50:37] 2026-01-10 18:49:44,361 | INFO     | all data control threads have been joined
[2026-01-10 13:50:37] 2026-01-10 18:49:44,400 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 13:50:37] 2026-01-10 18:49:44,400 | INFO     | aborting loop
[2026-01-10 13:50:37] 2026-01-10 18:49:44,525 | INFO     | all payload control threads have been joined
[2026-01-10 13:50:37] 2026-01-10 18:49:44,683 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 13:50:37] 2026-01-10 18:49:45,176 | INFO     | [job] retrieve thread has finished
[2026-01-10 13:50:37] 2026-01-10 18:49:45,176 | INFO     | [job] queue monitor thread has finished
[2026-01-10 13:50:37] 2026-01-10 18:49:45,327 | INFO     | [payload] validate_post thread has finished
[2026-01-10 13:50:37] 2026-01-10 18:49:45,366 | INFO     | [data] control thread has finished
[2026-01-10 13:50:37] 2026-01-10 18:49:45,404 | INFO     | [job] job monitor thread has finished
[2026-01-10 13:50:37] 2026-01-10 18:49:45,523 | INFO     | all job control threads have been joined
[2026-01-10 13:50:37] 2026-01-10 18:49:45,531 | INFO     | [payload] control thread has finished
[2026-01-10 13:50:37] 2026-01-10 18:49:45,635 | INFO     | [job] validate thread has finished
[2026-01-10 13:50:37] 2026-01-10 18:49:46,042 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 13:50:37] 2026-01-10 18:49:46,048 | INFO     | [payload] failed_post thread has finished
[2026-01-10 13:50:37] 2026-01-10 18:49:46,118 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 13:50:37] 2026-01-10 18:49:46,127 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 13:50:37] 2026-01-10 18:49:46,135 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 13:50:37] 2026-01-10 18:49:46,482 | INFO     | [data] copytool_in thread has finished
[2026-01-10 13:50:37] 2026-01-10 18:49:46,528 | INFO     | [job] control thread has finished
[2026-01-10 13:50:37] 2026-01-10 18:49:46,688 | INFO     | [data] copytool_out thread has finished
[2026-01-10 13:50:37] 2026-01-10 18:49:47,147 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 13:50:37] 2026-01-10 18:49:51,153 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 13:50:37] 2026-01-10 18:50:15,063 | INFO     | PID=16742 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 13:50:37] 2026-01-10 18:50:15,063 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 13:50:37] 2026-01-10 18:50:15,063 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 13:50:37] 2026-01-10 18:50:15,063 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 13:50:37] 2026-01-10 18:50:30,030 | INFO     | [monitor] cgroup control has ended
[2026-01-10 13:50:37] 2026-01-10 18:50:31,797 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140116230813504)>', '<ExcThread(monitor, started 140114969745152)>']
[2026-01-10 13:50:37] 2026-01-10 18:50:32,139 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 13:50:37] 2026-01-10 18:50:32,139 | INFO     | [monitor] control thread has ended
[2026-01-10 13:50:37] 2026-01-10 18:50:36,823 | INFO     | all workflow threads have been joined
[2026-01-10 13:50:37] 2026-01-10 18:50:36,823 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 13:50:37] 2026-01-10 18:50:36,830 | INFO     | traces error code: 0
[2026-01-10 13:50:37] 2026-01-10 18:50:36,830 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 13:50:37] 2026-01-10 18:50:36,928 [wrapper] ==== pilot stdout END ====
[2026-01-10 13:50:37] 2026-01-10 18:50:36,932 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 13:50:37] 2026-01-10 18:50:36,936 [wrapper] pilotpid: 16742
[2026-01-10 13:50:37] 2026-01-10 18:50:36,940 [wrapper] Pilot exit status: 0
[2026-01-10 13:50:37] 2026-01-10 18:50:36,954 [wrapper] pandaids: 6963161367
[2026-01-10 13:50:37] 2026-01-10 18:50:36,996 [wrapper] cleanup supervisor_pilot 25406 16743
[2026-01-10 13:50:37] 2026-01-10 18:50:36,999 [wrapper] Test setup, not cleaning
[2026-01-10 13:50:37] 2026-01-10 18:50:37,003 [wrapper] apfmon messages muted
[2026-01-10 13:50:37] 2026-01-10 18:50:37,007 [wrapper] ==== wrapper stdout END ====
[2026-01-10 13:50:37] 2026-01-10 18:50:37,010 [wrapper] ==== wrapper stderr END ====
[2026-01-10 13:50:37]  *** Error codes and diagnostics ***
[2026-01-10 13:50:37]     "exeErrorCode": 0,
[2026-01-10 13:50:37]     "exeErrorDiag": "",
[2026-01-10 13:50:37]     "pilotErrorCode": 0,
[2026-01-10 13:50:37]     "pilotErrorDiag": "",
[2026-01-10 13:50:37]  *** Listing of results directory ***
[2026-01-10 13:50:37] total 435204
[2026-01-10 13:50:37] -rw-r--r-- 1 boincer umatlas    597923 Jan  7 08:01 pilot3.tar.gz
[2026-01-10 13:50:37] -rwx------ 1 boincer umatlas     36322 Jan  8 16:46 runpilot2-wrapper.sh
[2026-01-10 13:50:37] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 16:47 queuedata.json
[2026-01-10 13:50:37] -rw-r--r-- 1 boincer umatlas       100 Jan 10 12:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 13:50:37] -rwxr-xr-x 1 boincer umatlas      7986 Jan 10 12:10 run_atlas
[2026-01-10 13:50:37] -rw-r--r-- 1 boincer umatlas       105 Jan 10 12:10 job.xml
[2026-01-10 13:50:37] -rw-r--r-- 2 boincer umatlas 223213438 Jan 10 12:10 EVNT.47898824._001279.pool.root.1
[2026-01-10 13:50:37] -rw-r--r-- 2 boincer umatlas     15847 Jan 10 12:10 start_atlas.sh
[2026-01-10 13:50:37] drwxrwx--x 2 boincer umatlas      4096 Jan 10 12:10 shared
[2026-01-10 13:50:37] -rw-r--r-- 2 boincer umatlas    610542 Jan 10 12:10 input.tar.gz
[2026-01-10 13:50:37] -rw-r--r-- 1 boincer umatlas         0 Jan 10 12:10 boinc_lockfile
[2026-01-10 13:50:37] -rw-r--r-- 1 boincer umatlas      2519 Jan 10 12:10 pandaJob.out
[2026-01-10 13:50:37] -rw------- 1 boincer umatlas        57 Jan 10 12:10 setup.sh.local
[2026-01-10 13:50:37] -rw------- 1 boincer umatlas    989556 Jan 10 12:10 agis_schedconf.cvmfs.json
[2026-01-10 13:50:37] -rw------- 1 boincer umatlas   1516240 Jan 10 12:10 agis_ddmendpoints.agis.ALL.json
[2026-01-10 13:50:37] drwx------ 7 boincer umatlas      4096 Jan 10 12:10 pilot3
[2026-01-10 13:50:37] -rw------- 1 boincer umatlas 215997857 Jan 10 13:49 HITS.47898826._033076.pool.root.1
[2026-01-10 13:50:37] -rw-r--r-- 1 boincer umatlas      5952 Jan 10 13:49 init_data.xml
[2026-01-10 13:50:37] -rw-r--r-- 1 boincer umatlas       530 Jan 10 13:49 boinc_task_state.xml
[2026-01-10 13:50:37] -rw------- 1 boincer umatlas      1047 Jan 10 13:49 memory_monitor_summary.json
[2026-01-10 13:50:37] -rw------- 1 boincer umatlas    394269 Jan 10 13:49 log.47898826._033076.job.log.tgz.1
[2026-01-10 13:50:37] -rw------- 1 boincer umatlas        95 Jan 10 13:49 pilot_heartbeat.json
[2026-01-10 13:50:37] -rw------- 1 boincer umatlas      7850 Jan 10 13:49 heartbeat.json
[2026-01-10 13:50:37] -rw-r--r-- 1 boincer umatlas      8192 Jan 10 13:50 boinc_mmap_file
[2026-01-10 13:50:37] -rw-r--r-- 1 boincer umatlas        27 Jan 10 13:50 wrapper_checkpoint.txt
[2026-01-10 13:50:37] -rw------- 1 boincer umatlas      4746 Jan 10 13:50 pilotlog.txt
[2026-01-10 13:50:37] -rw------- 1 boincer umatlas    850386 Jan 10 13:50 log.47898826._033076.job.log.1
[2026-01-10 13:50:37] -rw------- 1 boincer umatlas       357 Jan 10 13:50 output.list
[2026-01-10 13:50:37] -rw-r--r-- 1 boincer umatlas       620 Jan 10 13:50 runtime_log
[2026-01-10 13:50:37] -rw------- 1 boincer umatlas   1259520 Jan 10 13:50 result.tar.gz
[2026-01-10 13:50:37] -rw-r--r-- 1 boincer umatlas      9344 Jan 10 13:50 runtime_log.err
[2026-01-10 13:50:37] -rw------- 1 boincer umatlas       660 Jan 10 13:50 iZsLDmF1Cy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmUHgKDmJtPbKm.diag
[2026-01-10 13:50:37] -rw-r--r-- 1 boincer umatlas     21954 Jan 10 13:50 stderr.txt
[2026-01-10 13:50:37] HITS file was successfully produced:
[2026-01-10 13:50:37] -rw------- 1 boincer umatlas 215997857 Jan 10 13:49 shared/HITS.pool.root.1
[2026-01-10 13:50:37]  *** Contents of shared directory: ***
[2026-01-10 13:50:37] total 430772
[2026-01-10 13:50:37] -rw-r--r-- 2 boincer umatlas 223213438 Jan 10 12:10 ATLAS.root_0
[2026-01-10 13:50:37] -rw-r--r-- 2 boincer umatlas     15847 Jan 10 12:10 start_atlas.sh
[2026-01-10 13:50:37] -rw-r--r-- 2 boincer umatlas    610542 Jan 10 12:10 input.tar.gz
[2026-01-10 13:50:37] -rw------- 1 boincer umatlas 215997857 Jan 10 13:49 HITS.pool.root.1
[2026-01-10 13:50:37] -rw------- 1 boincer umatlas   1259520 Jan 10 13:50 result.tar.gz
13:50:38 (13062): run_atlas exited; CPU time 64526.586275
13:50:38 (13062): called boinc_finish(0)

</stderr_txt>
]]>

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