Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:10:43 (4076209): wrapper (7.7.26015): starting
11:10:43 (4076209): wrapper: running run_atlas (--nthreads 9)
[2026-01-10 11:10:43] Arguments: --nthreads 9
[2026-01-10 11:10:43] Threads: 9
[2026-01-10 11:10:43] Checking for CVMFS
[2026-01-10 11:10:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 11:10:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 11:10:43] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 11:10:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 11:10:43] 2.13.3.0 11160 95072 403380 154984 2 602 23875450 32935937 11525 16776704 0 271678387 99.509 418090194 40460 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 11:10:43] CVMFS is ok
[2026-01-10 11:10:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 11:10:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 11:10:43] Further information can be found at the LHC@home message board.
[2026-01-10 11:10:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 11:10:43] Checking for apptainer binary...
[2026-01-10 11:10:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 11:10:43] Running /usr/bin/apptainer --version
[2026-01-10 11:10:44] apptainer version 1.4.5-2.el9
[2026-01-10 11:10:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 11:10:44] c6-2-29-2.aglt2.org
[2026-01-10 11:10:44] apptainer works
[2026-01-10 11:10:44] Set ATHENA_PROC_NUMBER=9
[2026-01-10 11:10:44] Set ATHENA_CORE_NUMBER=9
[2026-01-10 11:10:44] Starting ATLAS job with PandaID=6965384264
[2026-01-10 11:10:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 11:53:20]  *** The last 200 lines of the pilot log: ***
[2026-01-10 11:53:20]  mtime=0
[2026-01-10 11:53:20]  protocol_id=None
[2026-01-10 11:53:20]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-10 11:53:20]  replicas=None
[2026-01-10 11:53:20]  scope=mc16_13TeV
[2026-01-10 11:53:20]  status=None
[2026-01-10 11:53:20]  status_code=0
[2026-01-10 11:53:20]  storage_token=
[2026-01-10 11:53:20]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6965384264/log.47962010._002405.job.log.tgz.1
[2026-01-10 11:53:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/6c/66/log.47962010._002405.job.log.tgz.1
[2026-01-10 11:53:20]  workdir=None
[2026-01-10 11:53:20] ]
[2026-01-10 11:53:20] 2026-01-10 16:52:40,992 | INFO     | time since job start (2505s) is within the limit (349056.0s)
[2026-01-10 11:53:20] 2026-01-10 16:52:41,003 | INFO     | 2508s have passed since pilot start - server update state is 'RUNNING'
[2026-01-10 11:53:20] 2026-01-10 16:52:41,009 | INFO     | transferring file log.47962010._002405.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6965384264/log.47962010._002405.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-10 11:53:20] 2026-01-10 16:52:41,009 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6965384264/log.47962010._002405.job.log.tgz.1 /tmp/boinchome/slots/0/log.47962010._002405.job
[2026-01-10 11:53:20] 2026-01-10 16:52:41,029 | INFO     | adding to output.list: log.47962010._002405.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/6c/66/log.47962010._002405.job.log.tgz.
[2026-01-10 11:53:20] 2026-01-10 16:52:41,030 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 11:53:20] 2026-01-10 16:52:41,030 | INFO     | summary of transferred files:
[2026-01-10 11:53:20] 2026-01-10 16:52:41,030 | INFO     |  -- lfn=log.47962010._002405.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 11:53:20] 2026-01-10 16:52:41,030 | INFO     | stage-out finished correctly
[2026-01-10 11:53:20] 2026-01-10 16:52:41,068 | INFO     | monitor loop #177: job 0:6965384264 is in state 'finished'
[2026-01-10 11:53:20] 2026-01-10 16:52:41,079 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 11:53:20] 2026-01-10 16:52:43,011 | INFO     | time since job start (2508s) is within the limit (349056.0s)
[2026-01-10 11:53:20] 2026-01-10 16:52:43,377 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 11:53:20] 2026-01-10 16:52:43,456 | INFO     | job 6965384264 has state=finished
[2026-01-10 11:53:20] 2026-01-10 16:52:43,456 | INFO     | preparing for final server update for job 6965384264 in state='finished'
[2026-01-10 11:53:20] 2026-01-10 16:52:43,457 | INFO     | this job has now completed (state=finished)
[2026-01-10 11:53:20] 2026-01-10 16:52:43,457 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 11:53:20] 2026-01-10 16:52:43,457 | INFO     | log transfer has been attempted: DONE
[2026-01-10 11:53:20] 2026-01-10 16:52:43,457 | INFO     | job 6965384264 has finished - writing final server update
[2026-01-10 11:53:20] 2026-01-10 16:52:43,458 | INFO     | total number of processed events: 50 (read)
[2026-01-10 11:53:20] 2026-01-10 16:52:43,465 | INFO     | executing command: lscpu
[2026-01-10 11:53:20] 2026-01-10 16:52:43,509 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 11:53:20] 2026-01-10 16:52:43,593 | INFO     | monitor loop #178: job 0:6965384264 is in state 'finished'
[2026-01-10 11:53:20] 2026-01-10 16:52:43,593 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 11:53:20] 2026-01-10 16:52:45,017 | INFO     | time since job start (2510s) is within the limit (349056.0s)
[2026-01-10 11:53:20] 2026-01-10 16:52:46,096 | INFO     | monitor loop #179: job 0:6965384264 is in state 'finished'
[2026-01-10 11:53:20] 2026-01-10 16:52:46,096 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 11:53:20] 2026-01-10 16:52:47,022 | INFO     | time since job start (2512s) is within the limit (349056.0s)
[2026-01-10 11:53:20] 2026-01-10 16:52:47,404 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-10 11:53:20] 2026-01-10 16:52:47,411 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3082.114982142856
[2026-01-10 11:53:20] 2026-01-10 16:52:47,420 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6965384264/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 11:53:20] 2026-01-10 16:52:47,420 | INFO     | extracted standard info from prmon json
[2026-01-10 11:53:20] 2026-01-10 16:52:47,421 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 11:53:20] 2026-01-10 16:52:47,421 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 11:53:20] 2026-01-10 16:52:47,422 | INFO     | fitting pss+swap vs Time
[2026-01-10 11:53:20] 2026-01-10 16:52:47,423 | INFO     | sum of square deviations: 12157730.470588231
[2026-01-10 11:53:20] 2026-01-10 16:52:47,423 | INFO     | sum of deviations: -1544336641.3529413
[2026-01-10 11:53:20] 2026-01-10 16:52:47,423 | INFO     | mean x: 1768062794.5294118
[2026-01-10 11:53:20] 2026-01-10 16:52:47,423 | INFO     | mean y: 2697082.8529411764
[2026-01-10 11:53:20] 2026-01-10 16:52:47,423 | INFO     | intersect: 224591008561.7253
[2026-01-10 11:53:20] 2026-01-10 16:52:47,423 | INFO     | chi2: 0.30809314363105245
[2026-01-10 11:53:20] 2026-01-10 16:52:47,423 | INFO     | current memory leak: -127.03 B/s (using 34 data points, chi2=0.31)
[2026-01-10 11:53:20] 2026-01-10 16:52:47,424 | INFO     | could have reported an average CPU frequency of 3105 MHz (5 samples)
[2026-01-10 11:53:20] 2026-01-10 16:52:47,424 | INFO     | ..............................
[2026-01-10 11:53:20] 2026-01-10 16:52:47,424 | INFO     | . Timing measurements:
[2026-01-10 11:53:20] 2026-01-10 16:52:47,424 | INFO     | . get job = 0 s
[2026-01-10 11:53:20] 2026-01-10 16:52:47,424 | INFO     | . initial setup = 2 s
[2026-01-10 11:53:20] 2026-01-10 16:52:47,424 | INFO     | . payload setup = 5 s
[2026-01-10 11:53:20] 2026-01-10 16:52:47,424 | INFO     | . stage-in = 0 s
[2026-01-10 11:53:20] 2026-01-10 16:52:47,424 | INFO     | . payload execution = 2478 s
[2026-01-10 11:53:20] 2026-01-10 16:52:47,424 | INFO     | . stage-out = 0 s
[2026-01-10 11:53:20] 2026-01-10 16:52:47,424 | INFO     | . log creation = 0 s
[2026-01-10 11:53:20] 2026-01-10 16:52:47,424 | INFO     | ..............................
[2026-01-10 11:53:20] 2026-01-10 16:52:47,528 | INFO     | 
[2026-01-10 11:53:20] 2026-01-10 16:52:47,528 | INFO     | job summary report
[2026-01-10 11:53:20] 2026-01-10 16:52:47,528 | INFO     | --------------------------------------------------
[2026-01-10 11:53:20] 2026-01-10 16:52:47,528 | INFO     | PanDA job id: 6965384264
[2026-01-10 11:53:20] 2026-01-10 16:52:47,528 | INFO     | task id: 47962010
[2026-01-10 11:53:20] 2026-01-10 16:52:47,528 | INFO     | errors: (none)
[2026-01-10 11:53:20] 2026-01-10 16:52:47,528 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 11:53:20] 2026-01-10 16:52:47,529 | INFO     | pilot state: finished 
[2026-01-10 11:53:20] 2026-01-10 16:52:47,529 | INFO     | transexitcode: 0
[2026-01-10 11:53:20] 2026-01-10 16:52:47,529 | INFO     | exeerrorcode: 0
[2026-01-10 11:53:20] 2026-01-10 16:52:47,529 | INFO     | exeerrordiag: 
[2026-01-10 11:53:20] 2026-01-10 16:52:47,529 | INFO     | exitcode: 0
[2026-01-10 11:53:20] 2026-01-10 16:52:47,529 | INFO     | exitmsg: OK
[2026-01-10 11:53:20] 2026-01-10 16:52:47,529 | INFO     | cpuconsumptiontime: 13479 s
[2026-01-10 11:53:20] 2026-01-10 16:52:47,529 | INFO     | nevents: 50
[2026-01-10 11:53:20] 2026-01-10 16:52:47,529 | INFO     | neventsw: 0
[2026-01-10 11:53:20] 2026-01-10 16:52:47,529 | INFO     | pid: 4087448
[2026-01-10 11:53:20] 2026-01-10 16:52:47,529 | INFO     | pgrp: 4087448
[2026-01-10 11:53:20] 2026-01-10 16:52:47,529 | INFO     | corecount: 9
[2026-01-10 11:53:20] 2026-01-10 16:52:47,529 | INFO     | event service: False
[2026-01-10 11:53:20] 2026-01-10 16:52:47,529 | INFO     | sizes: {0: 2284342, 1: 2284597, 5: 2284859, 12: 2284915, 2488: 2310883, 2490: 2319877, 2492: 2320061, 2496: 2320339}
[2026-01-10 11:53:20] 2026-01-10 16:52:47,529 | INFO     | --------------------------------------------------
[2026-01-10 11:53:20] 2026-01-10 16:52:47,529 | INFO     | 
[2026-01-10 11:53:20] 2026-01-10 16:52:47,529 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-10 11:53:20] 2026-01-10 16:52:47,549 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 11:53:20] 2026-01-10 16:52:47,549 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 11:53:20] 2026-01-10 16:52:47,550 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 11:53:20] 2026-01-10 16:52:47,550 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 11:53:20] 2026-01-10 16:52:47,550 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 11:53:20] 2026-01-10 16:52:47,550 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 11:53:20] 2026-01-10 16:52:47,550 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 11:53:20] 2026-01-10 16:52:47,550 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 11:53:20] 2026-01-10 16:52:47,550 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 11:53:20] 2026-01-10 16:52:47,550 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 11:53:20] 2026-01-10 16:52:47,550 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 11:53:20] 2026-01-10 16:52:47,550 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 11:53:20] 2026-01-10 16:52:47,550 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 11:53:20] 2026-01-10 16:52:47,550 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 11:53:20] 2026-01-10 16:52:47,550 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 11:53:20] 2026-01-10 16:52:47,550 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 11:53:20] 2026-01-10 16:52:47,551 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 11:53:20] 2026-01-10 16:52:47,551 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 11:53:20] 2026-01-10 16:52:47,551 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 11:53:20] 2026-01-10 16:52:47,551 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 11:53:20] 2026-01-10 16:52:47,551 | INFO     | job 6965384264 has completed (purged errors)
[2026-01-10 11:53:20] 2026-01-10 16:52:47,551 | INFO     | overall cleanup function is called
[2026-01-10 11:53:20] 2026-01-10 16:52:48,567 | INFO     | --- collectZombieJob: --- 10, [4087448]
[2026-01-10 11:53:20] 2026-01-10 16:52:48,567 | INFO     | zombie collector waiting for pid 4087448
[2026-01-10 11:53:20] 2026-01-10 16:52:48,567 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 11:53:20] 2026-01-10 16:52:48,567 | INFO     | collected zombie processes
[2026-01-10 11:53:20] 2026-01-10 16:52:48,567 | INFO     | will attempt to kill all subprocesses of pid=4087448
[2026-01-10 11:53:20] 2026-01-10 16:52:48,826 | INFO     | process IDs to be killed: [4087448] (in reverse order)
[2026-01-10 11:53:20] 2026-01-10 16:52:48,918 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 11:53:20] 2026-01-10 16:52:48,918 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 11:53:20] 2026-01-10 16:52:48,930 | INFO     | did not find any defunct processes belonging to 4087448
[2026-01-10 11:53:20] 2026-01-10 16:52:48,941 | INFO     | did not find any defunct processes belonging to 4087448
[2026-01-10 11:53:20] 2026-01-10 16:52:48,941 | INFO     | ready for new job
[2026-01-10 11:53:20] 2026-01-10 16:52:48,941 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 11:53:20] 2026-01-10 16:52:48,943 | INFO     | ***************************************
[2026-01-10 11:53:20] 2026-01-10 16:52:48,943 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 11:53:20] 2026-01-10 16:52:48,943 | INFO     | ***************************************
[2026-01-10 11:53:20] 2026-01-10 16:52:48,943 | INFO     | 
[2026-01-10 11:53:20] 2026-01-10 16:52:48,946 | INFO     | architecture information:
[2026-01-10 11:53:20] 2026-01-10 16:52:48,947 | INFO     | executing command: cat /etc/os-release
[2026-01-10 11:53:20] 2026-01-10 16:52:48,961 | INFO     | cat /etc/os-release:
[2026-01-10 11:53:20] NAME="CentOS Linux"
[2026-01-10 11:53:20] VERSION="7 (Core)"
[2026-01-10 11:53:20] ID="centos"
[2026-01-10 11:53:20] ID_LIKE="rhel fedora"
[2026-01-10 11:53:20] VERSION_ID="7"
[2026-01-10 11:53:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 11:53:20] ANSI_COLOR="0;31"
[2026-01-10 11:53:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 11:53:20] HOME_URL="https://www.centos.org/"
[2026-01-10 11:53:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 11:53:20] 
[2026-01-10 11:53:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 11:53:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 11:53:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 11:53:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 11:53:20] 
[2026-01-10 11:53:20] 2026-01-10 16:52:48,962 | INFO     | ***************************************
[2026-01-10 11:53:20] 2026-01-10 16:52:49,464 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-10 11:53:20] 2026-01-10 16:52:49,480 | INFO     | sufficient remaining disk space (76319555584 B)
[2026-01-10 11:53:20] 2026-01-10 16:52:49,480 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 11:53:20] 2026-01-10 16:52:49,481 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 11:53:20] 2026-01-10 16:52:49,481 | INFO     | update_server=False
[2026-01-10 11:53:20] 2026-01-10 16:52:49,481 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 11:53:20] 2026-01-10 16:52:49,481 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 11:53:20] 2026-01-10 16:52:49,481 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 11:53:20] 2026-01-10 16:52:49,481 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 11:53:20] 2026-01-10 16:52:49,601 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 11:53:20] 2026-01-10 16:52:49,601 | INFO     | aborting loop
[2026-01-10 11:53:20] 2026-01-10 16:52:49,894 | INFO     | all data control threads have been joined
[2026-01-10 11:53:20] 2026-01-10 16:52:50,131 | INFO     | all job control threads have been joined
[2026-01-10 11:53:20] 2026-01-10 16:52:50,148 | INFO     | all payload control threads have been joined
[2026-01-10 11:53:20] 2026-01-10 16:52:50,486 | INFO     | [job] retrieve thread has finished
[2026-01-10 11:53:20] 2026-01-10 16:52:50,486 | INFO     | [job] queue monitor thread has finished
[2026-01-10 11:53:20] 2026-01-10 16:52:50,511 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 11:53:20] 2026-01-10 16:52:50,532 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 11:53:20] 2026-01-10 16:52:50,541 | INFO     | [payload] failed_post thread has finished
[2026-01-10 11:53:20] 2026-01-10 16:52:50,606 | INFO     | [job] job monitor thread has finished
[2026-01-10 11:53:20] 2026-01-10 16:52:50,900 | INFO     | [data] control thread has finished
[2026-01-10 11:53:20] 2026-01-10 16:52:51,022 | INFO     | [payload] validate_post thread has finished
[2026-01-10 11:53:20] 2026-01-10 16:52:51,137 | INFO     | [job] control thread has finished
[2026-01-10 11:53:20] 2026-01-10 16:52:51,153 | INFO     | [payload] control thread has finished
[2026-01-10 11:53:20] 2026-01-10 16:52:51,167 | INFO     | [data] copytool_in thread has finished
[2026-01-10 11:53:20] 2026-01-10 16:52:51,218 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 11:53:20] 2026-01-10 16:52:51,487 | INFO     | [data] copytool_out thread has finished
[2026-01-10 11:53:20] 2026-01-10 16:52:51,740 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 11:53:20] 2026-01-10 16:52:51,776 | INFO     | [job] validate thread has finished
[2026-01-10 11:53:20] 2026-01-10 16:52:53,488 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 11:53:20] 2026-01-10 16:52:59,225 | INFO     | [monitor] cgroup control has ended
[2026-01-10 11:53:20] 2026-01-10 16:53:00,442 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139814600677184)>', '<ExcThread(monitor, started 139814095529728)>']
[2026-01-10 11:53:20] 2026-01-10 16:53:05,467 | INFO     | all workflow threads have been joined
[2026-01-10 11:53:20] 2026-01-10 16:53:05,468 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 11:53:20] 2026-01-10 16:53:05,468 | INFO     | traces error code: 0
[2026-01-10 11:53:20] 2026-01-10 16:53:05,469 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 11:53:20] 2026-01-10 16:53:20,443 | INFO     | PID=4079873 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 11:53:20] 2026-01-10 16:53:20,443 | INFO     | .. there are 11 such processes running
[2026-01-10 11:53:20] 2026-01-10 16:53:20,443 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 11:53:20] 2026-01-10 16:53:20,443 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 11:53:20] 2026-01-10 16:53:20,444 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 11:53:20] 2026-01-10 16:53:20,444 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 11:53:20] 2026-01-10 16:53:20,444 | INFO     | [monitor] control thread has ended
[2026-01-10 11:53:20] 2026-01-10 16:53:20,599 [wrapper] ==== pilot stdout END ====
[2026-01-10 11:53:20] 2026-01-10 16:53:20,601 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 11:53:20] 2026-01-10 16:53:20,604 [wrapper] pilotpid: 4079873
[2026-01-10 11:53:20] 2026-01-10 16:53:20,607 [wrapper] Pilot exit status: 0
[2026-01-10 11:53:20] 2026-01-10 16:53:20,617 [wrapper] pandaids: 6965384264
[2026-01-10 11:53:20] 2026-01-10 16:53:20,677 [wrapper] cleanup supervisor_pilot 4166721 4079874
[2026-01-10 11:53:20] 2026-01-10 16:53:20,680 [wrapper] Test setup, not cleaning
[2026-01-10 11:53:20] 2026-01-10 16:53:20,682 [wrapper] apfmon messages muted
[2026-01-10 11:53:20] 2026-01-10 16:53:20,684 [wrapper] ==== wrapper stdout END ====
[2026-01-10 11:53:20] 2026-01-10 16:53:20,687 [wrapper] ==== wrapper stderr END ====
[2026-01-10 11:53:20]  *** Error codes and diagnostics ***
[2026-01-10 11:53:20]     "exeErrorCode": 0,
[2026-01-10 11:53:20]     "exeErrorDiag": "",
[2026-01-10 11:53:20]     "pilotErrorCode": 0,
[2026-01-10 11:53:20]     "pilotErrorDiag": "",
[2026-01-10 11:53:20]  *** Listing of results directory ***
[2026-01-10 11:53:20] total 434096
[2026-01-10 11:53:20] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:14 pilot3.tar.gz
[2026-01-10 11:53:20] -rwx------. 1 boincer umatlas     36322 Jan 10 08:14 runpilot2-wrapper.sh
[2026-01-10 11:53:20] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:15 queuedata.json
[2026-01-10 11:53:20] -rw-r--r--. 1 boincer umatlas       100 Jan 10 11:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 11:53:20] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 11:10 run_atlas
[2026-01-10 11:53:20] -rw-r--r--. 1 boincer umatlas       105 Jan 10 11:10 job.xml
[2026-01-10 11:53:20] -rw-r--r--. 2 boincer umatlas 392228514 Jan 10 11:10 EVNT.47962006._000099.pool.root.1
[2026-01-10 11:53:20] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 11:10 start_atlas.sh
[2026-01-10 11:53:20] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 11:10 shared
[2026-01-10 11:53:20] -rw-r--r--. 2 boincer umatlas    592617 Jan 10 11:10 input.tar.gz
[2026-01-10 11:53:20] -rw-r--r--. 1 boincer umatlas         0 Jan 10 11:10 boinc_lockfile
[2026-01-10 11:53:20] -rw-r--r--. 1 boincer umatlas      2890 Jan 10 11:10 pandaJob.out
[2026-01-10 11:53:20] -rw-------. 1 boincer umatlas        57 Jan 10 11:10 setup.sh.local
[2026-01-10 11:53:20] -rw-------. 1 boincer umatlas    989556 Jan 10 11:10 agis_schedconf.cvmfs.json
[2026-01-10 11:53:20] -rw-------. 1 boincer umatlas   1516240 Jan 10 11:10 agis_ddmendpoints.agis.ALL.json
[2026-01-10 11:53:20] drwx------. 5 boincer umatlas      4096 Jan 10 11:10 pilot3
[2026-01-10 11:53:20] -rw-r--r--. 1 boincer umatlas       529 Jan 10 11:44 boinc_task_state.xml
[2026-01-10 11:53:20] -rw-r--r--. 1 boincer umatlas      6842 Jan 10 11:49 init_data.xml
[2026-01-10 11:53:20] -rw-------. 1 boincer umatlas  45026430 Jan 10 11:52 HITS.47962010._002405.pool.root.1
[2026-01-10 11:53:20] -rw-------. 1 boincer umatlas      1033 Jan 10 11:52 memory_monitor_summary.json
[2026-01-10 11:53:20] -rw-------. 1 boincer umatlas        95 Jan 10 11:52 pilot_heartbeat.json
[2026-01-10 11:53:20] -rw-------. 1 boincer umatlas   1270302 Jan 10 11:52 log.47962010._002405.job.log.tgz.1
[2026-01-10 11:53:20] -rw-------. 1 boincer umatlas      8576 Jan 10 11:52 heartbeat.json
[2026-01-10 11:53:20] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 11:53 boinc_mmap_file
[2026-01-10 11:53:20] -rw-r--r--. 1 boincer umatlas        27 Jan 10 11:53 wrapper_checkpoint.txt
[2026-01-10 11:53:20] -rw-------. 1 boincer umatlas       823 Jan 10 11:53 pilotlog.txt
[2026-01-10 11:53:20] -rw-------. 1 boincer umatlas    402144 Jan 10 11:53 log.47962010._002405.job.log.1
[2026-01-10 11:53:20] -rw-------. 1 boincer umatlas       353 Jan 10 11:53 output.list
[2026-01-10 11:53:20] -rw-r--r--. 1 boincer umatlas       620 Jan 10 11:53 runtime_log
[2026-01-10 11:53:20] -rw-------. 1 boincer umatlas   1689600 Jan 10 11:53 result.tar.gz
[2026-01-10 11:53:20] -rw-r--r--. 1 boincer umatlas      9347 Jan 10 11:53 runtime_log.err
[2026-01-10 11:53:20] -rw-------. 1 boincer umatlas       653 Jan 10 11:53 BoRLDmayny8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmOahKDm20l1Ln.diag
[2026-01-10 11:53:20] -rw-r--r--. 1 boincer umatlas     21845 Jan 10 11:53 stderr.txt
[2026-01-10 11:53:20] HITS file was successfully produced:
[2026-01-10 11:53:20] -rw-------. 1 boincer umatlas 45026430 Jan 10 11:52 shared/HITS.pool.root.1
[2026-01-10 11:53:20]  *** Contents of shared directory: ***
[2026-01-10 11:53:20] total 429260
[2026-01-10 11:53:20] -rw-r--r--. 2 boincer umatlas 392228514 Jan 10 11:10 ATLAS.root_0
[2026-01-10 11:53:20] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 11:10 start_atlas.sh
[2026-01-10 11:53:20] -rw-r--r--. 2 boincer umatlas    592617 Jan 10 11:10 input.tar.gz
[2026-01-10 11:53:20] -rw-------. 1 boincer umatlas  45026430 Jan 10 11:52 HITS.pool.root.1
[2026-01-10 11:53:20] -rw-------. 1 boincer umatlas   1689600 Jan 10 11:53 result.tar.gz
11:53:21 (4076209): run_atlas exited; CPU time 13477.300041
11:53:21 (4076209): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN