Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:03:06 (737724): wrapper (7.7.26015): starting
11:03:06 (737724): wrapper: running run_atlas (--nthreads 9)
[2026-01-10 11:03:06] Arguments: --nthreads 9
[2026-01-10 11:03:06] Threads: 9
[2026-01-10 11:03:06] Checking for CVMFS
[2026-01-10 11:03:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 11:03:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 11:03:06] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 11:03:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 11:03:06] 2.13.3.0 22787 95014 172236 154984 2 277 33813310 40960000 20820 16776704 0 1129304653 99.713 835689580 49901 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 11:03:06] CVMFS is ok
[2026-01-10 11:03:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 11:03:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 11:03:06] Further information can be found at the LHC@home message board.
[2026-01-10 11:03:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 11:03:06] Checking for apptainer binary...
[2026-01-10 11:03:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 11:03:06] Running /usr/bin/apptainer --version
[2026-01-10 11:03:06] apptainer version 1.4.5-2.el9
[2026-01-10 11:03:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 11:03:07] c8-6-11.aglt2.org
[2026-01-10 11:03:07] apptainer works
[2026-01-10 11:03:07] Set ATHENA_PROC_NUMBER=9
[2026-01-10 11:03:07] Set ATHENA_CORE_NUMBER=9
[2026-01-10 11:03:07] Starting ATLAS job with PandaID=6963375898
[2026-01-10 11:03:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 00:01:49]  *** The last 200 lines of the pilot log: ***
[2026-01-11 00:01:49] 2026-01-11 05:01:01,366 | INFO     | extracted standard info from prmon json
[2026-01-11 00:01:49] 2026-01-11 05:01:01,366 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 00:01:49] 2026-01-11 05:01:01,366 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 00:01:49] 2026-01-11 05:01:01,377 | INFO     | fitting pss+swap vs Time
[2026-01-11 00:01:49] 2026-01-11 05:01:01,377 | INFO     | sum of square deviations: 138283380260.41214
[2026-01-11 00:01:49] 2026-01-11 05:01:01,398 | INFO     | sum of deviations: 521480823542.7377
[2026-01-11 00:01:49] 2026-01-11 05:01:01,398 | INFO     | mean x: 1768084309.393979
[2026-01-11 00:01:49] 2026-01-11 05:01:01,398 | INFO     | mean y: 2984480.6819371725
[2026-01-11 00:01:49] 2026-01-11 05:01:01,398 | INFO     | intersect: -6664642966.806211
[2026-01-11 00:01:49] 2026-01-11 05:01:01,399 | INFO     | chi2: 12.270079315824361
[2026-01-11 00:01:49] 2026-01-11 05:01:01,399 | INFO     | sum of square deviations: 135586403116.38985
[2026-01-11 00:01:49] 2026-01-11 05:01:01,429 | INFO     | sum of deviations: 803569931209.0815
[2026-01-11 00:01:49] 2026-01-11 05:01:01,429 | INFO     | mean x: 1768084156.8998682
[2026-01-11 00:01:49] 2026-01-11 05:01:01,429 | INFO     | mean y: 3000431.816864295
[2026-01-11 00:01:49] 2026-01-11 05:01:01,429 | INFO     | intersect: -10475773484.121235
[2026-01-11 00:01:49] 2026-01-11 05:01:01,430 | INFO     | chi2: 8.586196858114041
[2026-01-11 00:01:49] 2026-01-11 05:01:01,430 | INFO     | current chi2=8.586196858114041 (change=30.023297836056567 %)
[2026-01-11 00:01:49] 2026-01-11 05:01:01,430 | INFO     | sum of square deviations: 132924728959.81468
[2026-01-11 00:01:49] 2026-01-11 05:01:01,436 | INFO     | sum of deviations: 1097438348434.8765
[2026-01-11 00:01:49] 2026-01-11 05:01:01,443 | INFO     | mean x: 1768084004.4058356
[2026-01-11 00:01:49] 2026-01-11 05:01:01,443 | INFO     | mean y: 3017271.301061008
[2026-01-11 00:01:49] 2026-01-11 05:01:01,443 | INFO     | intersect: -14594441041.183943
[2026-01-11 00:01:49] 2026-01-11 05:01:01,443 | INFO     | chi2: 4.756350383034254
[2026-01-11 00:01:49] 2026-01-11 05:01:01,443 | INFO     | current chi2=4.756350383034254 (change=44.60468981048977 %)
[2026-01-11 00:01:49] 2026-01-11 05:01:01,444 | INFO     | sum of square deviations: 130298125228.18423
[2026-01-11 00:01:49] 2026-01-11 05:01:01,458 | INFO     | sum of deviations: 1308154698337.153
[2026-01-11 00:01:49] 2026-01-11 05:01:01,458 | INFO     | mean x: 1768083851.9118824
[2026-01-11 00:01:49] 2026-01-11 05:01:01,458 | INFO     | mean y: 3029486.275033378
[2026-01-11 00:01:49] 2026-01-11 05:01:01,458 | INFO     | intersect: -17748010245.74009
[2026-01-11 00:01:49] 2026-01-11 05:01:01,467 | INFO     | chi2: 2.3891115565790693
[2026-01-11 00:01:49] 2026-01-11 05:01:01,467 | INFO     | current chi2=2.3891115565790693 (change=49.77006813667572 %)
[2026-01-11 00:01:49] 2026-01-11 05:01:01,467 | INFO     | sum of square deviations: 127706176850.3216
[2026-01-11 00:01:49] 2026-01-11 05:01:01,482 | INFO     | sum of deviations: 1326190190886.96
[2026-01-11 00:01:49] 2026-01-11 05:01:01,482 | INFO     | mean x: 1768083699.4126344
[2026-01-11 00:01:49] 2026-01-11 05:01:01,482 | INFO     | mean y: 3030538.514784946
[2026-01-11 00:01:49] 2026-01-11 05:01:01,482 | INFO     | intersect: -18357986263.173763
[2026-01-11 00:01:49] 2026-01-11 05:01:01,482 | INFO     | chi2: 2.246400023319522
[2026-01-11 00:01:49] 2026-01-11 05:01:01,482 | INFO     | current chi2=2.246400023319522 (change=5.97341437935589 %)
[2026-01-11 00:01:49] 2026-01-11 05:01:01,482 | INFO     | right removable region: 743
[2026-01-11 00:01:49] 2026-01-11 05:01:01,496 | INFO     | sum of square deviations: 135586032969.18826
[2026-01-11 00:01:49] 2026-01-11 05:01:01,504 | INFO     | sum of deviations: 327193256715.5224
[2026-01-11 00:01:49] 2026-01-11 05:01:01,504 | INFO     | mean x: 1768084461.8985507
[2026-01-11 00:01:49] 2026-01-11 05:01:01,504 | INFO     | mean y: 2995442.1106719365
[2026-01-11 00:01:49] 2026-01-11 05:01:01,504 | INFO     | intersect: -4263707407.497468
[2026-01-11 00:01:49] 2026-01-11 05:01:01,504 | INFO     | chi2: 10.299228547314787
[2026-01-11 00:01:49] 2026-01-11 05:01:01,504 | INFO     | current chi2=10.299228547314787 (change=16.06224962187348 %)
[2026-01-11 00:01:49] 2026-01-11 05:01:01,504 | INFO     | left removable region: 10
[2026-01-11 00:01:49] 2026-01-11 05:01:01,505 | INFO     | sum of square deviations: 122125079626.25069
[2026-01-11 00:01:49] 2026-01-11 05:01:01,511 | INFO     | sum of deviations: 1069916380674.4895
[2026-01-11 00:01:49] 2026-01-11 05:01:01,511 | INFO     | mean x: 1768083973.919509
[2026-01-11 00:01:49] 2026-01-11 05:01:01,512 | INFO     | mean y: 3045466.2455661665
[2026-01-11 00:01:49] 2026-01-11 05:01:01,512 | INFO     | intersect: -15486827800.52207
[2026-01-11 00:01:49] 2026-01-11 05:01:01,512 | INFO     | chi2: 0.1343016948667492
[2026-01-11 00:01:49] 2026-01-11 05:01:01,512 | INFO     | current memory leak: 8.76 B/s (using 733 data points, chi2=0.13)
[2026-01-11 00:01:49] 2026-01-11 05:01:01,513 | INFO     | could have reported an average CPU frequency of 3800 MHz (29 samples)
[2026-01-11 00:01:49] 2026-01-11 05:01:01,513 | INFO     | ..............................
[2026-01-11 00:01:49] 2026-01-11 05:01:01,513 | INFO     | . Timing measurements:
[2026-01-11 00:01:49] 2026-01-11 05:01:01,513 | INFO     | . get job = 0 s
[2026-01-11 00:01:49] 2026-01-11 05:01:01,513 | INFO     | . initial setup = 2 s
[2026-01-11 00:01:49] 2026-01-11 05:01:01,513 | INFO     | . payload setup = 10 s
[2026-01-11 00:01:49] 2026-01-11 05:01:01,513 | INFO     | . stage-in = 0 s
[2026-01-11 00:01:49] 2026-01-11 05:01:01,513 | INFO     | . payload execution = 46597 s
[2026-01-11 00:01:49] 2026-01-11 05:01:01,513 | INFO     | . stage-out = 3 s
[2026-01-11 00:01:49] 2026-01-11 05:01:01,513 | INFO     | . log creation = 1 s
[2026-01-11 00:01:49] 2026-01-11 05:01:01,513 | INFO     | ..............................
[2026-01-11 00:01:49] 2026-01-11 05:01:01,562 | INFO     | 
[2026-01-11 00:01:49] 2026-01-11 05:01:01,562 | INFO     | job summary report
[2026-01-11 00:01:49] 2026-01-11 05:01:01,562 | INFO     | --------------------------------------------------
[2026-01-11 00:01:49] 2026-01-11 05:01:01,563 | INFO     | PanDA job id: 6963375898
[2026-01-11 00:01:49] 2026-01-11 05:01:01,563 | INFO     | task id: 47962010
[2026-01-11 00:01:49] 2026-01-11 05:01:01,563 | INFO     | errors: (none)
[2026-01-11 00:01:49] 2026-01-11 05:01:01,563 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 00:01:49] 2026-01-11 05:01:01,563 | INFO     | pilot state: finished 
[2026-01-11 00:01:49] 2026-01-11 05:01:01,563 | INFO     | transexitcode: 0
[2026-01-11 00:01:49] 2026-01-11 05:01:01,563 | INFO     | exeerrorcode: 0
[2026-01-11 00:01:49] 2026-01-11 05:01:01,563 | INFO     | exeerrordiag: 
[2026-01-11 00:01:49] 2026-01-11 05:01:01,563 | INFO     | exitcode: 0
[2026-01-11 00:01:49] 2026-01-11 05:01:01,563 | INFO     | exitmsg: OK
[2026-01-11 00:01:49] 2026-01-11 05:01:01,563 | INFO     | cpuconsumptiontime: 141958 s
[2026-01-11 00:01:49] 2026-01-11 05:01:01,563 | INFO     | nevents: 900
[2026-01-11 00:01:49] 2026-01-11 05:01:01,563 | INFO     | neventsw: 0
[2026-01-11 00:01:49] 2026-01-11 05:01:01,563 | INFO     | pid: 759318
[2026-01-11 00:01:49] 2026-01-11 05:01:01,563 | INFO     | pgrp: 759318
[2026-01-11 00:01:49] 2026-01-11 05:01:01,563 | INFO     | corecount: 9
[2026-01-11 00:01:49] 2026-01-11 05:01:01,563 | INFO     | event service: False
[2026-01-11 00:01:49] 2026-01-11 05:01:01,563 | INFO     | sizes: {0: 2284395, 1: 2284650, 7: 2284912, 11: 2284940, 46611: 2331072, 46616: 2340066, 46617: 2340250, 46644: 2340496}
[2026-01-11 00:01:49] 2026-01-11 05:01:01,563 | INFO     | --------------------------------------------------
[2026-01-11 00:01:49] 2026-01-11 05:01:01,563 | INFO     | 
[2026-01-11 00:01:49] 2026-01-11 05:01:01,563 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-11 00:01:49] 2026-01-11 05:01:01,579 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 00:01:49] 2026-01-11 05:01:01,579 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 00:01:49] 2026-01-11 05:01:01,579 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 00:01:49] 2026-01-11 05:01:01,579 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 00:01:49] 2026-01-11 05:01:01,579 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 00:01:49] 2026-01-11 05:01:01,579 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 00:01:49] 2026-01-11 05:01:01,579 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 00:01:49] 2026-01-11 05:01:01,579 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 00:01:49] 2026-01-11 05:01:01,579 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 00:01:49] 2026-01-11 05:01:01,579 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 00:01:49] 2026-01-11 05:01:01,579 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 00:01:49] 2026-01-11 05:01:01,579 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 00:01:49] 2026-01-11 05:01:01,580 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 00:01:49] 2026-01-11 05:01:01,580 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 00:01:49] 2026-01-11 05:01:01,580 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 00:01:49] 2026-01-11 05:01:01,580 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 00:01:49] 2026-01-11 05:01:01,580 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 00:01:49] 2026-01-11 05:01:01,580 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 00:01:49] 2026-01-11 05:01:01,580 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 00:01:49] 2026-01-11 05:01:01,580 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 00:01:49] 2026-01-11 05:01:01,580 | INFO     | job 6963375898 has completed (purged errors)
[2026-01-11 00:01:49] 2026-01-11 05:01:01,580 | INFO     | overall cleanup function is called
[2026-01-11 00:01:49] 2026-01-11 05:01:02,615 | INFO     | --- collectZombieJob: --- 10, [759318]
[2026-01-11 00:01:49] 2026-01-11 05:01:02,615 | INFO     | zombie collector waiting for pid 759318
[2026-01-11 00:01:49] 2026-01-11 05:01:02,615 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 00:01:49] 2026-01-11 05:01:02,615 | INFO     | collected zombie processes
[2026-01-11 00:01:49] 2026-01-11 05:01:02,615 | INFO     | will attempt to kill all subprocesses of pid=759318
[2026-01-11 00:01:49] 2026-01-11 05:01:03,761 | INFO     | process IDs to be killed: [759318] (in reverse order)
[2026-01-11 00:01:49] 2026-01-11 05:01:04,138 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 00:01:49] 2026-01-11 05:01:04,139 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 00:01:49] 2026-01-11 05:01:04,167 | INFO     | did not find any defunct processes belonging to 759318
[2026-01-11 00:01:49] 2026-01-11 05:01:04,210 | INFO     | did not find any defunct processes belonging to 759318
[2026-01-11 00:01:49] 2026-01-11 05:01:04,211 | INFO     | ready for new job
[2026-01-11 00:01:49] 2026-01-11 05:01:04,211 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 00:01:49] 2026-01-11 05:01:04,221 | INFO     | ***************************************
[2026-01-11 00:01:49] 2026-01-11 05:01:04,221 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 00:01:49] 2026-01-11 05:01:04,221 | INFO     | ***************************************
[2026-01-11 00:01:49] 2026-01-11 05:01:04,221 | INFO     | 
[2026-01-11 00:01:49] 2026-01-11 05:01:04,226 | INFO     | architecture information:
[2026-01-11 00:01:49] 2026-01-11 05:01:04,226 | INFO     | executing command: cat /etc/os-release
[2026-01-11 00:01:49] 2026-01-11 05:01:04,278 | INFO     | cat /etc/os-release:
[2026-01-11 00:01:49] NAME="CentOS Linux"
[2026-01-11 00:01:49] VERSION="7 (Core)"
[2026-01-11 00:01:49] ID="centos"
[2026-01-11 00:01:49] ID_LIKE="rhel fedora"
[2026-01-11 00:01:49] VERSION_ID="7"
[2026-01-11 00:01:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 00:01:49] ANSI_COLOR="0;31"
[2026-01-11 00:01:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 00:01:49] HOME_URL="https://www.centos.org/"
[2026-01-11 00:01:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 00:01:49] 
[2026-01-11 00:01:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 00:01:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 00:01:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 00:01:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 00:01:49] 
[2026-01-11 00:01:49] 2026-01-11 05:01:04,278 | INFO     | ***************************************
[2026-01-11 00:01:49] 2026-01-11 05:01:04,782 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-11 00:01:49] 2026-01-11 05:01:04,823 | INFO     | sufficient remaining disk space (167306592256 B)
[2026-01-11 00:01:49] 2026-01-11 05:01:04,823 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 00:01:49] 2026-01-11 05:01:04,823 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 00:01:49] 2026-01-11 05:01:04,823 | INFO     | update_server=False
[2026-01-11 00:01:49] 2026-01-11 05:01:04,823 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 00:01:49] 2026-01-11 05:01:04,823 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 00:01:49] 2026-01-11 05:01:04,824 | INFO     | aborting loop
[2026-01-11 00:01:49] 2026-01-11 05:01:04,850 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 00:01:49] 2026-01-11 05:01:05,164 | INFO     | all data control threads have been joined
[2026-01-11 00:01:49] 2026-01-11 05:01:05,197 | INFO     | all job control threads have been joined
[2026-01-11 00:01:49] 2026-01-11 05:01:05,258 | INFO     | all payload control threads have been joined
[2026-01-11 00:01:49] 2026-01-11 05:01:05,829 | INFO     | [job] retrieve thread has finished
[2026-01-11 00:01:49] 2026-01-11 05:01:05,829 | INFO     | [job] job monitor thread has finished
[2026-01-11 00:01:49] 2026-01-11 05:01:05,871 | INFO     | [job] validate thread has finished
[2026-01-11 00:01:49] 2026-01-11 05:01:05,917 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 00:01:49] 2026-01-11 05:01:06,022 | INFO     | [payload] failed_post thread has finished
[2026-01-11 00:01:49] 2026-01-11 05:01:06,170 | INFO     | [data] control thread has finished
[2026-01-11 00:01:49] 2026-01-11 05:01:06,203 | INFO     | [job] control thread has finished
[2026-01-11 00:01:49] 2026-01-11 05:01:06,264 | INFO     | [payload] control thread has finished
[2026-01-11 00:01:49] 2026-01-11 05:01:06,364 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 00:01:49] 2026-01-11 05:01:06,577 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 00:01:49] 2026-01-11 05:01:06,590 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 00:01:49] 2026-01-11 05:01:06,857 | INFO     | [data] copytool_out thread has finished
[2026-01-11 00:01:49] 2026-01-11 05:01:06,874 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 00:01:49] 2026-01-11 05:01:07,106 | INFO     | [data] copytool_in thread has finished
[2026-01-11 00:01:49] 2026-01-11 05:01:07,265 | INFO     | [payload] validate_post thread has finished
[2026-01-11 00:01:49] 2026-01-11 05:01:07,583 | INFO     | [job] queue monitor thread has finished
[2026-01-11 00:01:49] 2026-01-11 05:01:07,858 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 00:01:49] 2026-01-11 05:01:11,868 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 00:01:49] 2026-01-11 05:01:34,861 | INFO     | PID=743640 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-11 00:01:49] 2026-01-11 05:01:34,862 | INFO     | .. there are 41 such processes running
[2026-01-11 00:01:49] 2026-01-11 05:01:34,862 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 00:01:49] 2026-01-11 05:01:34,862 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 00:01:49] 2026-01-11 05:01:34,862 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 00:01:49] 2026-01-11 05:01:41,794 | INFO     | [monitor] cgroup control has ended
[2026-01-11 00:01:49] 2026-01-11 05:01:43,897 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140472366778176)>', '<ExcThread(monitor, started 140471603033856)>']
[2026-01-11 00:01:49] 2026-01-11 05:01:43,919 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 00:01:49] 2026-01-11 05:01:43,919 | INFO     | [monitor] control thread has ended
[2026-01-11 00:01:49] 2026-01-11 05:01:48,923 | INFO     | all workflow threads have been joined
[2026-01-11 00:01:49] 2026-01-11 05:01:48,923 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 00:01:49] 2026-01-11 05:01:48,923 | INFO     | traces error code: 0
[2026-01-11 00:01:49] 2026-01-11 05:01:48,923 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 00:01:49] 2026-01-11 05:01:49,152 [wrapper] ==== pilot stdout END ====
[2026-01-11 00:01:49] 2026-01-11 05:01:49,176 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 00:01:49] 2026-01-11 05:01:49,201 [wrapper] pilotpid: 743640
[2026-01-11 00:01:49] 2026-01-11 05:01:49,242 [wrapper] Pilot exit status: 0
[2026-01-11 00:01:49] 2026-01-11 05:01:49,334 [wrapper] pandaids: 6963375898
[2026-01-11 00:01:49] 2026-01-11 05:01:49,488 [wrapper] cleanup supervisor_pilot 1820624 743641
[2026-01-11 00:01:49] 2026-01-11 05:01:49,499 [wrapper] Test setup, not cleaning
[2026-01-11 00:01:49] 2026-01-11 05:01:49,502 [wrapper] apfmon messages muted
[2026-01-11 00:01:49] 2026-01-11 05:01:49,505 [wrapper] ==== wrapper stdout END ====
[2026-01-11 00:01:49] 2026-01-11 05:01:49,510 [wrapper] ==== wrapper stderr END ====
[2026-01-11 00:01:49]  *** Error codes and diagnostics ***
[2026-01-11 00:01:49]     "exeErrorCode": 0,
[2026-01-11 00:01:49]     "exeErrorDiag": "",
[2026-01-11 00:01:49]     "pilotErrorCode": 0,
[2026-01-11 00:01:49]     "pilotErrorDiag": "",
[2026-01-11 00:01:49]  *** Listing of results directory ***
[2026-01-11 00:01:49] total 1173944
[2026-01-11 00:01:49] -rw-r--r--. 1 boincer umatlas    579449 Jan  9 02:13 pilot3.tar.gz
[2026-01-11 00:01:49] -rw-r--r--. 1 boincer umatlas      5112 Jan  9 02:13 queuedata.json
[2026-01-11 00:01:49] -rwx------. 1 boincer umatlas     36322 Jan  9 02:14 runpilot2-wrapper.sh
[2026-01-11 00:01:49] -rw-r--r--. 1 boincer umatlas       100 Jan 10 11:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 00:01:49] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 11:03 run_atlas
[2026-01-11 00:01:49] -rw-r--r--. 1 boincer umatlas       105 Jan 10 11:03 job.xml
[2026-01-11 00:01:49] -rw-r--r--. 2 boincer umatlas 392458857 Jan 10 11:03 EVNT.47962006._000084.pool.root.1
[2026-01-11 00:01:49] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 11:03 start_atlas.sh
[2026-01-11 00:01:49] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 11:03 shared
[2026-01-11 00:01:49] -rw-r--r--. 2 boincer umatlas    592613 Jan 10 11:03 input.tar.gz
[2026-01-11 00:01:49] -rw-r--r--. 1 boincer umatlas         0 Jan 10 11:03 boinc_lockfile
[2026-01-11 00:01:49] -rw-r--r--. 1 boincer umatlas      2892 Jan 10 11:03 pandaJob.out
[2026-01-11 00:01:49] -rw-------. 1 boincer umatlas        57 Jan 10 11:03 setup.sh.local
[2026-01-11 00:01:49] -rw-------. 1 boincer umatlas    989556 Jan 10 11:03 agis_schedconf.cvmfs.json
[2026-01-11 00:01:49] drwx------. 5 boincer umatlas      4096 Jan 10 11:03 pilot3
[2026-01-11 00:01:49] -rw-r--r--. 1 boincer umatlas       533 Jan 10 23:41 boinc_task_state.xml
[2026-01-11 00:01:49] -rw-r--r--. 1 boincer umatlas      7174 Jan 10 23:56 init_data.xml
[2026-01-11 00:01:49] -rw-------. 1 boincer umatlas 789856659 Jan 11 00:00 HITS.47962010._001059.pool.root.1
[2026-01-11 00:01:49] -rw-------. 1 boincer umatlas      1049 Jan 11 00:00 memory_monitor_summary.json
[2026-01-11 00:01:49] -rw-------. 1 boincer umatlas   1516240 Jan 11 00:00 agis_ddmendpoints.agis.ALL.json
[2026-01-11 00:01:49] -rw-------. 1 boincer umatlas   2022283 Jan 11 00:00 log.47962010._001059.job.log.tgz.1
[2026-01-11 00:01:49] -rw-------. 1 boincer umatlas        95 Jan 11 00:00 pilot_heartbeat.json
[2026-01-11 00:01:49] -rw-------. 1 boincer umatlas      8580 Jan 11 00:01 heartbeat.json
[2026-01-11 00:01:49] -rw-r--r--. 1 boincer umatlas      8192 Jan 11 00:01 boinc_mmap_file
[2026-01-11 00:01:49] -rw-r--r--. 1 boincer umatlas        29 Jan 11 00:01 wrapper_checkpoint.txt
[2026-01-11 00:01:49] -rw-------. 1 boincer umatlas      4824 Jan 11 00:01 pilotlog.txt
[2026-01-11 00:01:49] -rw-------. 1 boincer umatlas   5915269 Jan 11 00:01 log.47962010._001059.job.log.1
[2026-01-11 00:01:49] -rw-------. 1 boincer umatlas       353 Jan 11 00:01 output.list
[2026-01-11 00:01:49] -rw-r--r--. 1 boincer umatlas       620 Jan 11 00:01 runtime_log
[2026-01-11 00:01:49] -rw-------. 1 boincer umatlas   7956480 Jan 11 00:01 result.tar.gz
[2026-01-11 00:01:49] -rw-------. 1 boincer umatlas       660 Jan 11 00:01 wOzLDmGsLy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmyGhKDmaGJitm.diag
[2026-01-11 00:01:49] -rw-r--r--. 1 boincer umatlas      9338 Jan 11 00:01 runtime_log.err
[2026-01-11 00:01:49] -rw-r--r--. 1 boincer umatlas     20996 Jan 11 00:01 stderr.txt
[2026-01-11 00:01:49] HITS file was successfully produced:
[2026-01-11 00:01:49] -rw-------. 1 boincer umatlas 789856659 Jan 11 00:00 shared/HITS.pool.root.1
[2026-01-11 00:01:49]  *** Contents of shared directory: ***
[2026-01-11 00:01:49] total 1162988
[2026-01-11 00:01:49] -rw-r--r--. 2 boincer umatlas 392458857 Jan 10 11:03 ATLAS.root_0
[2026-01-11 00:01:49] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 11:03 start_atlas.sh
[2026-01-11 00:01:49] -rw-r--r--. 2 boincer umatlas    592613 Jan 10 11:03 input.tar.gz
[2026-01-11 00:01:49] -rw-------. 1 boincer umatlas 789856659 Jan 11 00:00 HITS.pool.root.1
[2026-01-11 00:01:49] -rw-------. 1 boincer umatlas   7956480 Jan 11 00:01 result.tar.gz
00:01:51 (737724): run_atlas exited; CPU time 142544.650880
00:01:51 (737724): called boinc_finish(0)

</stderr_txt>
]]>

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