Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:49:09 (2110435): wrapper (7.7.26015): starting
09:49:09 (2110435): wrapper: running run_atlas (--nthreads 10)
[2026-01-10 09:49:09] Arguments: --nthreads 10
[2026-01-10 09:49:09] Threads: 10
[2026-01-10 09:49:09] Checking for CVMFS
[2026-01-10 09:49:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 09:49:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 09:49:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 09:49:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 09:49:10] 2.13.3.0 5699 940 89400 154982 1 89 24221512 40960001 19603 16776704 0 2282443 99.923 343128 28953 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 09:49:10] CVMFS is ok
[2026-01-10 09:49:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 09:49:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 09:49:10] Further information can be found at the LHC@home message board.
[2026-01-10 09:49:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 09:49:10] Checking for apptainer binary...
[2026-01-10 09:49:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 09:49:10] Running /usr/bin/apptainer --version
[2026-01-10 09:49:10] apptainer version 1.4.5-2.el9
[2026-01-10 09:49:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 09:49:10] c-212-12.aglt2.org
[2026-01-10 09:49:10] apptainer works
[2026-01-10 09:49:10] Set ATHENA_PROC_NUMBER=10
[2026-01-10 09:49:10] Set ATHENA_CORE_NUMBER=10
[2026-01-10 09:49:10] Starting ATLAS job with PandaID=6962915427
[2026-01-10 09:49:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 12:16:03]  *** The last 200 lines of the pilot log: ***
[2026-01-10 12:16:03] 2026-01-10 17:15:25,777 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 12:16:03] 2026-01-10 17:15:25,989 | INFO     | time since job start (8747s) is within the limit (174528.0s)
[2026-01-10 12:16:03] 2026-01-10 17:15:27,194 | INFO     | monitor loop #596: job 0:6962915427 is in state 'finished'
[2026-01-10 12:16:03] 2026-01-10 17:15:27,194 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:16:03] 2026-01-10 17:15:27,995 | INFO     | time since job start (8749s) is within the limit (174528.0s)
[2026-01-10 12:16:03] 2026-01-10 17:15:29,697 | INFO     | monitor loop #597: job 0:6962915427 is in state 'finished'
[2026-01-10 12:16:03] 2026-01-10 17:15:29,697 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:16:03] 2026-01-10 17:15:29,964 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 12:16:03] 2026-01-10 17:15:29,969 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3145.8439375
[2026-01-10 12:16:03] 2026-01-10 17:15:29,983 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6962915427/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 12:16:03] 2026-01-10 17:15:29,984 | INFO     | extracted standard info from prmon json
[2026-01-10 12:16:03] 2026-01-10 17:15:29,984 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 12:16:03] 2026-01-10 17:15:29,984 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 12:16:03] 2026-01-10 17:15:29,984 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 12:16:03] 2026-01-10 17:15:29,984 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 12:16:03] 2026-01-10 17:15:29,986 | INFO     | fitting pss+swap vs Time
[2026-01-10 12:16:03] 2026-01-10 17:15:29,987 | INFO     | sum of square deviations: 906690703.9720294
[2026-01-10 12:16:03] 2026-01-10 17:15:29,987 | INFO     | sum of deviations: 18565419508.923073
[2026-01-10 12:16:03] 2026-01-10 17:15:29,987 | INFO     | mean x: 1768060962.013986
[2026-01-10 12:16:03] 2026-01-10 17:15:29,987 | INFO     | mean y: 2616665.5384615385
[2026-01-10 12:16:03] 2026-01-10 17:15:29,987 | INFO     | intersect: -36200239869.044876
[2026-01-10 12:16:03] 2026-01-10 17:15:29,988 | INFO     | chi2: 1.5878983046372503
[2026-01-10 12:16:03] 2026-01-10 17:15:29,988 | INFO     | sum of square deviations: 814866336.4710153
[2026-01-10 12:16:03] 2026-01-10 17:15:29,988 | INFO     | sum of deviations: 17638209605.811584
[2026-01-10 12:16:03] 2026-01-10 17:15:29,988 | INFO     | mean x: 1768060809.5144928
[2026-01-10 12:16:03] 2026-01-10 17:15:29,989 | INFO     | mean y: 2615120.5942028984
[2026-01-10 12:16:03] 2026-01-10 17:15:29,989 | INFO     | intersect: -38267989220.59617
[2026-01-10 12:16:03] 2026-01-10 17:15:29,989 | INFO     | chi2: 1.590063870940765
[2026-01-10 12:16:03] 2026-01-10 17:15:29,989 | INFO     | current chi2=1.590063870940765 (change=-0.13637940774862387 %)
[2026-01-10 12:16:03] 2026-01-10 17:15:29,989 | INFO     | right removable region: 137
[2026-01-10 12:16:03] 2026-01-10 17:15:29,989 | INFO     | sum of square deviations: 814865116.4710153
[2026-01-10 12:16:03] 2026-01-10 17:15:29,990 | INFO     | sum of deviations: -3184432275.449276
[2026-01-10 12:16:03] 2026-01-10 17:15:29,990 | INFO     | mean x: 1768061114.5144928
[2026-01-10 12:16:03] 2026-01-10 17:15:29,990 | INFO     | mean y: 2652145.724637681
[2026-01-10 12:16:03] 2026-01-10 17:15:29,990 | INFO     | intersect: 6912103494.44615
[2026-01-10 12:16:03] 2026-01-10 17:15:29,990 | INFO     | chi2: 0.1227977726595323
[2026-01-10 12:16:03] 2026-01-10 17:15:29,990 | INFO     | current chi2=0.1227977726595323 (change=92.26664753650044 %)
[2026-01-10 12:16:03] 2026-01-10 17:15:29,990 | INFO     | sum of square deviations: 729458253.9699264
[2026-01-10 12:16:03] 2026-01-10 17:15:29,991 | INFO     | sum of deviations: -1615426048.8421059
[2026-01-10 12:16:03] 2026-01-10 17:15:29,991 | INFO     | mean x: 1768061267.0150375
[2026-01-10 12:16:03] 2026-01-10 17:15:29,991 | INFO     | mean y: 2649231.4210526315
[2026-01-10 12:16:03] 2026-01-10 17:15:29,991 | INFO     | intersect: 3918119666.0082827
[2026-01-10 12:16:03] 2026-01-10 17:15:29,991 | INFO     | chi2: 0.101048517009584
[2026-01-10 12:16:03] 2026-01-10 17:15:29,991 | INFO     | current chi2=0.101048517009584 (change=17.711441485384295 %)
[2026-01-10 12:16:03] 2026-01-10 17:15:29,991 | INFO     | left removable region: 20
[2026-01-10 12:16:03] 2026-01-10 17:15:29,991 | INFO     | sum of square deviations: 496590996.99145323
[2026-01-10 12:16:03] 2026-01-10 17:15:29,992 | INFO     | sum of deviations: 4822282708.128203
[2026-01-10 12:16:03] 2026-01-10 17:15:29,992 | INFO     | mean x: 1768061389.008547
[2026-01-10 12:16:03] 2026-01-10 17:15:29,992 | INFO     | mean y: 2634548.871794872
[2026-01-10 12:16:03] 2026-01-10 17:15:29,992 | INFO     | intersect: -17166609184.461111
[2026-01-10 12:16:03] 2026-01-10 17:15:29,992 | INFO     | chi2: 0.0011256485861543635
[2026-01-10 12:16:03] 2026-01-10 17:15:29,992 | INFO     | current memory leak: 9.71 B/s (using 117 data points, chi2=0.00)
[2026-01-10 12:16:03] 2026-01-10 17:15:29,993 | INFO     | could have reported an average CPU frequency of 3125 MHz (8 samples)
[2026-01-10 12:16:03] 2026-01-10 17:15:29,993 | INFO     | ..............................
[2026-01-10 12:16:03] 2026-01-10 17:15:29,993 | INFO     | . Timing measurements:
[2026-01-10 12:16:03] 2026-01-10 17:15:29,993 | INFO     | . get job = 0 s
[2026-01-10 12:16:03] 2026-01-10 17:15:29,993 | INFO     | . initial setup = 4 s
[2026-01-10 12:16:03] 2026-01-10 17:15:29,993 | INFO     | . payload setup = 21 s
[2026-01-10 12:16:03] 2026-01-10 17:15:29,993 | INFO     | . stage-in = 0 s
[2026-01-10 12:16:03] 2026-01-10 17:15:29,993 | INFO     | . payload execution = 8698 s
[2026-01-10 12:16:03] 2026-01-10 17:15:29,993 | INFO     | . stage-out = 0 s
[2026-01-10 12:16:03] 2026-01-10 17:15:29,993 | INFO     | . log creation = 0 s
[2026-01-10 12:16:03] 2026-01-10 17:15:29,993 | INFO     | ..............................
[2026-01-10 12:16:03] 2026-01-10 17:15:30,005 | INFO     | time since job start (8752s) is within the limit (174528.0s)
[2026-01-10 12:16:03] 2026-01-10 17:15:30,530 | INFO     | 
[2026-01-10 12:16:03] 2026-01-10 17:15:30,530 | INFO     | job summary report
[2026-01-10 12:16:03] 2026-01-10 17:15:30,530 | INFO     | --------------------------------------------------
[2026-01-10 12:16:03] 2026-01-10 17:15:30,531 | INFO     | PanDA job id: 6962915427
[2026-01-10 12:16:03] 2026-01-10 17:15:30,531 | INFO     | task id: 47898826
[2026-01-10 12:16:03] 2026-01-10 17:15:30,531 | INFO     | errors: (none)
[2026-01-10 12:16:03] 2026-01-10 17:15:30,531 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 12:16:03] 2026-01-10 17:15:30,531 | INFO     | pilot state: finished 
[2026-01-10 12:16:03] 2026-01-10 17:15:30,531 | INFO     | transexitcode: 0
[2026-01-10 12:16:03] 2026-01-10 17:15:30,531 | INFO     | exeerrorcode: 0
[2026-01-10 12:16:03] 2026-01-10 17:15:30,531 | INFO     | exeerrordiag: 
[2026-01-10 12:16:03] 2026-01-10 17:15:30,531 | INFO     | exitcode: 0
[2026-01-10 12:16:03] 2026-01-10 17:15:30,531 | INFO     | exitmsg: OK
[2026-01-10 12:16:03] 2026-01-10 17:15:30,531 | INFO     | cpuconsumptiontime: 42835 s
[2026-01-10 12:16:03] 2026-01-10 17:15:30,531 | INFO     | nevents: 400
[2026-01-10 12:16:03] 2026-01-10 17:15:30,531 | INFO     | neventsw: 0
[2026-01-10 12:16:03] 2026-01-10 17:15:30,531 | INFO     | pid: 2128070
[2026-01-10 12:16:03] 2026-01-10 17:15:30,531 | INFO     | pgrp: 2128070
[2026-01-10 12:16:03] 2026-01-10 17:15:30,531 | INFO     | corecount: 10
[2026-01-10 12:16:03] 2026-01-10 17:15:30,531 | INFO     | event service: False
[2026-01-10 12:16:03] 2026-01-10 17:15:30,532 | INFO     | sizes: {0: 2283968, 8: 2284230, 11: 2284258, 8723: 2312163, 8724: 2321216, 8726: 2321216, 8730: 2321538}
[2026-01-10 12:16:03] 2026-01-10 17:15:30,532 | INFO     | --------------------------------------------------
[2026-01-10 12:16:03] 2026-01-10 17:15:30,532 | INFO     | 
[2026-01-10 12:16:03] 2026-01-10 17:15:30,532 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-10 12:16:03] 2026-01-10 17:15:30,553 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 12:16:03] 2026-01-10 17:15:30,553 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 12:16:03] 2026-01-10 17:15:30,553 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 12:16:03] 2026-01-10 17:15:30,553 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 12:16:03] 2026-01-10 17:15:30,553 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 12:16:03] 2026-01-10 17:15:30,553 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 12:16:03] 2026-01-10 17:15:30,553 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 12:16:03] 2026-01-10 17:15:30,553 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 12:16:03] 2026-01-10 17:15:30,553 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 12:16:03] 2026-01-10 17:15:30,554 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 12:16:03] 2026-01-10 17:15:30,554 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 12:16:03] 2026-01-10 17:15:30,554 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 12:16:03] 2026-01-10 17:15:30,554 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 12:16:03] 2026-01-10 17:15:30,554 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 12:16:03] 2026-01-10 17:15:30,554 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 12:16:03] 2026-01-10 17:15:30,554 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 12:16:03] 2026-01-10 17:15:30,554 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 12:16:03] 2026-01-10 17:15:30,554 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 12:16:03] 2026-01-10 17:15:30,554 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 12:16:03] 2026-01-10 17:15:30,554 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 12:16:03] 2026-01-10 17:15:30,554 | INFO     | job 6962915427 has completed (purged errors)
[2026-01-10 12:16:03] 2026-01-10 17:15:30,554 | INFO     | overall cleanup function is called
[2026-01-10 12:16:03] 2026-01-10 17:15:31,563 | INFO     | --- collectZombieJob: --- 10, [2128070]
[2026-01-10 12:16:03] 2026-01-10 17:15:31,563 | INFO     | zombie collector waiting for pid 2128070
[2026-01-10 12:16:03] 2026-01-10 17:15:31,563 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 12:16:03] 2026-01-10 17:15:31,563 | INFO     | collected zombie processes
[2026-01-10 12:16:03] 2026-01-10 17:15:31,563 | INFO     | will attempt to kill all subprocesses of pid=2128070
[2026-01-10 12:16:03] 2026-01-10 17:15:31,858 | INFO     | process IDs to be killed: [2128070] (in reverse order)
[2026-01-10 12:16:03] 2026-01-10 17:15:31,960 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 12:16:03] 2026-01-10 17:15:31,961 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 12:16:03] 2026-01-10 17:15:31,973 | INFO     | did not find any defunct processes belonging to 2128070
[2026-01-10 12:16:03] 2026-01-10 17:15:31,985 | INFO     | did not find any defunct processes belonging to 2128070
[2026-01-10 12:16:03] 2026-01-10 17:15:31,985 | INFO     | ready for new job
[2026-01-10 12:16:03] 2026-01-10 17:15:31,985 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 12:16:03] 2026-01-10 17:15:31,988 | INFO     | ***************************************
[2026-01-10 12:16:03] 2026-01-10 17:15:31,988 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 12:16:03] 2026-01-10 17:15:31,988 | INFO     | ***************************************
[2026-01-10 12:16:03] 2026-01-10 17:15:31,988 | INFO     | 
[2026-01-10 12:16:03] 2026-01-10 17:15:31,993 | INFO     | architecture information:
[2026-01-10 12:16:03] 2026-01-10 17:15:31,993 | INFO     | executing command: cat /etc/os-release
[2026-01-10 12:16:03] 2026-01-10 17:15:32,010 | INFO     | cat /etc/os-release:
[2026-01-10 12:16:03] NAME="CentOS Linux"
[2026-01-10 12:16:03] VERSION="7 (Core)"
[2026-01-10 12:16:03] ID="centos"
[2026-01-10 12:16:03] ID_LIKE="rhel fedora"
[2026-01-10 12:16:03] VERSION_ID="7"
[2026-01-10 12:16:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 12:16:03] ANSI_COLOR="0;31"
[2026-01-10 12:16:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 12:16:03] HOME_URL="https://www.centos.org/"
[2026-01-10 12:16:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 12:16:03] 
[2026-01-10 12:16:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 12:16:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 12:16:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 12:16:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 12:16:03] 
[2026-01-10 12:16:03] 2026-01-10 17:15:32,011 | INFO     | ***************************************
[2026-01-10 12:16:03] 2026-01-10 17:15:32,512 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-10 12:16:03] 2026-01-10 17:15:32,533 | INFO     | sufficient remaining disk space (129785397248 B)
[2026-01-10 12:16:03] 2026-01-10 17:15:32,533 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 12:16:03] 2026-01-10 17:15:32,534 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 12:16:03] 2026-01-10 17:15:32,534 | INFO     | update_server=False
[2026-01-10 12:16:03] 2026-01-10 17:15:32,534 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 12:16:03] 2026-01-10 17:15:32,534 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 12:16:03] 2026-01-10 17:15:32,534 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 12:16:03] 2026-01-10 17:15:32,957 | INFO     | all data control threads have been joined
[2026-01-10 12:16:03] 2026-01-10 17:15:33,198 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:16:03] 2026-01-10 17:15:33,198 | INFO     | aborting loop
[2026-01-10 12:16:03] 2026-01-10 17:15:33,331 | INFO     | all payload control threads have been joined
[2026-01-10 12:16:03] 2026-01-10 17:15:33,441 | INFO     | all job control threads have been joined
[2026-01-10 12:16:03] 2026-01-10 17:15:33,539 | INFO     | [job] retrieve thread has finished
[2026-01-10 12:16:03] 2026-01-10 17:15:33,963 | INFO     | [data] control thread has finished
[2026-01-10 12:16:03] 2026-01-10 17:15:34,028 | INFO     | [payload] validate_post thread has finished
[2026-01-10 12:16:03] 2026-01-10 17:15:34,203 | INFO     | [job] job monitor thread has finished
[2026-01-10 12:16:03] 2026-01-10 17:15:34,218 | INFO     | [job] validate thread has finished
[2026-01-10 12:16:03] 2026-01-10 17:15:34,332 | INFO     | [payload] control thread has finished
[2026-01-10 12:16:03] 2026-01-10 17:15:34,362 | INFO     | [payload] failed_post thread has finished
[2026-01-10 12:16:03] 2026-01-10 17:15:34,373 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 12:16:03] 2026-01-10 17:15:34,417 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 12:16:03] 2026-01-10 17:15:34,446 | INFO     | [job] control thread has finished
[2026-01-10 12:16:03] 2026-01-10 17:15:34,540 | INFO     | [data] copytool_out thread has finished
[2026-01-10 12:16:03] 2026-01-10 17:15:34,740 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 12:16:03] 2026-01-10 17:15:34,930 | INFO     | [data] copytool_in thread has finished
[2026-01-10 12:16:03] 2026-01-10 17:15:35,078 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:16:03] 2026-01-10 17:15:36,083 | INFO     | [job] queue monitor thread has finished
[2026-01-10 12:16:03] 2026-01-10 17:15:36,540 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 12:16:03] 2026-01-10 17:15:43,348 | INFO     | job.realtimelogging is not enabled
[2026-01-10 12:16:03] 2026-01-10 17:15:44,353 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 12:16:03] 2026-01-10 17:15:52,759 | INFO     | [monitor] cgroup control has ended
[2026-01-10 12:16:03] 2026-01-10 17:15:53,239 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139721045940032)>', '<ExcThread(monitor, started 139720696776448)>']
[2026-01-10 12:16:03] 2026-01-10 17:15:58,265 | INFO     | all workflow threads have been joined
[2026-01-10 12:16:03] 2026-01-10 17:15:58,265 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 12:16:03] 2026-01-10 17:15:58,265 | INFO     | traces error code: 0
[2026-01-10 12:16:03] 2026-01-10 17:15:58,265 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 12:16:03] 2026-01-10 17:16:03,453 | INFO     | PID=2116998 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 12:16:03] 2026-01-10 17:16:03,453 | INFO     | .. there are 12 such processes running
[2026-01-10 12:16:03] 2026-01-10 17:16:03,457 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 12:16:03] 2026-01-10 17:16:03,457 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 12:16:03] 2026-01-10 17:16:03,457 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 12:16:03] 2026-01-10 17:16:03,457 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 12:16:03] 2026-01-10 17:16:03,457 | INFO     | [monitor] control thread has ended
[2026-01-10 12:16:03] 2026-01-10 17:16:03,545 [wrapper] ==== pilot stdout END ====
[2026-01-10 12:16:03] 2026-01-10 17:16:03,550 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 12:16:03] 2026-01-10 17:16:03,552 [wrapper] pilotpid: 2116998
[2026-01-10 12:16:03] 2026-01-10 17:16:03,554 [wrapper] Pilot exit status: 0
[2026-01-10 12:16:03] 2026-01-10 17:16:03,565 [wrapper] pandaids: 6962915427
[2026-01-10 12:16:03] 2026-01-10 17:16:03,635 [wrapper] cleanup supervisor_pilot 2336771 2116999
[2026-01-10 12:16:03] 2026-01-10 17:16:03,638 [wrapper] Test setup, not cleaning
[2026-01-10 12:16:03] 2026-01-10 17:16:03,639 [wrapper] apfmon messages muted
[2026-01-10 12:16:03] 2026-01-10 17:16:03,641 [wrapper] ==== wrapper stdout END ====
[2026-01-10 12:16:03] 2026-01-10 17:16:03,643 [wrapper] ==== wrapper stderr END ====
[2026-01-10 12:16:03]  *** Error codes and diagnostics ***
[2026-01-10 12:16:03]     "exeErrorCode": 0,
[2026-01-10 12:16:03]     "exeErrorDiag": "",
[2026-01-10 12:16:03]     "pilotErrorCode": 0,
[2026-01-10 12:16:03]     "pilotErrorDiag": "",
[2026-01-10 12:16:03]  *** Listing of results directory ***
[2026-01-10 12:16:03] total 437828
[2026-01-10 12:16:03] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 02:56 pilot3.tar.gz
[2026-01-10 12:16:03] -rwx------. 1 boincer umatlas     36322 Jan  8 03:01 runpilot2-wrapper.sh
[2026-01-10 12:16:03] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 03:03 queuedata.json
[2026-01-10 12:16:03] -rw-r--r--. 1 boincer umatlas       100 Jan 10 09:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 12:16:03] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 09:49 run_atlas
[2026-01-10 12:16:03] -rw-r--r--. 1 boincer umatlas       105 Jan 10 09:49 job.xml
[2026-01-10 12:16:03] -rw-r--r--. 2 boincer umatlas 225623562 Jan 10 09:49 EVNT.47898824._000399.pool.root.1
[2026-01-10 12:16:03] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 09:49 start_atlas.sh
[2026-01-10 12:16:03] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 09:49 shared
[2026-01-10 12:16:03] -rw-r--r--. 2 boincer umatlas    592394 Jan 10 09:49 input.tar.gz
[2026-01-10 12:16:03] -rw-r--r--. 1 boincer umatlas         0 Jan 10 09:49 boinc_lockfile
[2026-01-10 12:16:03] -rw-r--r--. 1 boincer umatlas      2518 Jan 10 09:49 pandaJob.out
[2026-01-10 12:16:03] -rw-------. 1 boincer umatlas        57 Jan 10 09:49 setup.sh.local
[2026-01-10 12:16:03] -rw-------. 1 boincer umatlas    989556 Jan 10 09:49 agis_schedconf.cvmfs.json
[2026-01-10 12:16:03] -rw-------. 1 boincer umatlas   1516240 Jan 10 09:49 agis_ddmendpoints.agis.ALL.json
[2026-01-10 12:16:03] drwx------. 5 boincer umatlas      4096 Jan 10 09:49 pilot3
[2026-01-10 12:16:03] -rw-r--r--. 1 boincer umatlas      6956 Jan 10 12:13 init_data.xml
[2026-01-10 12:16:03] -rw-------. 1 boincer umatlas 215565351 Jan 10 12:14 HITS.47898826._018169.pool.root.1
[2026-01-10 12:16:03] -rw-r--r--. 1 boincer umatlas       529 Jan 10 12:15 boinc_task_state.xml
[2026-01-10 12:16:03] -rw-------. 1 boincer umatlas      1027 Jan 10 12:15 memory_monitor_summary.json
[2026-01-10 12:16:03] -rw-------. 1 boincer umatlas    422930 Jan 10 12:15 log.47898826._018169.job.log.tgz.1
[2026-01-10 12:16:03] -rw-------. 1 boincer umatlas      7768 Jan 10 12:15 heartbeat.json
[2026-01-10 12:16:03] -rw-r--r--. 1 boincer umatlas        27 Jan 10 12:16 wrapper_checkpoint.txt
[2026-01-10 12:16:03] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 12:16 boinc_mmap_file
[2026-01-10 12:16:03] -rw-------. 1 boincer umatlas        95 Jan 10 12:16 pilot_heartbeat.json
[2026-01-10 12:16:03] -rw-------. 1 boincer umatlas       823 Jan 10 12:16 pilotlog.txt
[2026-01-10 12:16:03] -rw-------. 1 boincer umatlas   1193649 Jan 10 12:16 log.47898826._018169.job.log.1
[2026-01-10 12:16:03] -rw-------. 1 boincer umatlas       357 Jan 10 12:16 output.list
[2026-01-10 12:16:03] -rw-r--r--. 1 boincer umatlas       620 Jan 10 12:16 runtime_log
[2026-01-10 12:16:03] -rw-------. 1 boincer umatlas   1638400 Jan 10 12:16 result.tar.gz
[2026-01-10 12:16:03] -rw-------. 1 boincer umatlas       653 Jan 10 12:16 vebLDmv8zx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwTjKDmWKNmOn.diag
[2026-01-10 12:16:03] -rw-r--r--. 1 boincer umatlas      9344 Jan 10 12:16 runtime_log.err
[2026-01-10 12:16:03] -rw-r--r--. 1 boincer umatlas     21447 Jan 10 12:16 stderr.txt
[2026-01-10 12:16:03] HITS file was successfully produced:
[2026-01-10 12:16:03] -rw-------. 1 boincer umatlas 215565351 Jan 10 12:14 shared/HITS.pool.root.1
[2026-01-10 12:16:03]  *** Contents of shared directory: ***
[2026-01-10 12:16:03] total 433052
[2026-01-10 12:16:03] -rw-r--r--. 2 boincer umatlas 225623562 Jan 10 09:49 ATLAS.root_0
[2026-01-10 12:16:03] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 09:49 start_atlas.sh
[2026-01-10 12:16:03] -rw-r--r--. 2 boincer umatlas    592394 Jan 10 09:49 input.tar.gz
[2026-01-10 12:16:03] -rw-------. 1 boincer umatlas 215565351 Jan 10 12:14 HITS.pool.root.1
[2026-01-10 12:16:03] -rw-------. 1 boincer umatlas   1638400 Jan 10 12:16 result.tar.gz
12:16:05 (2110435): run_atlas exited; CPU time 43038.985905
12:16:05 (2110435): called boinc_finish(0)

</stderr_txt>
]]>

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