Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:52:59 (484927): wrapper (7.7.26015): starting
10:52:59 (484927): wrapper: running run_atlas (--nthreads 9)
[2026-01-10 10:52:59] Arguments: --nthreads 9
[2026-01-10 10:52:59] Threads: 9
[2026-01-10 10:52:59] Checking for CVMFS
[2026-01-10 10:53:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 10:53:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 10:53:00] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 10:53:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 10:53:02] 2.13.3.0 15551 93353 339372 154984 3 159 27093662 32935937 9243 16776704 0 207623562 99.407 329493571 40539 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 10:53:02] CVMFS is ok
[2026-01-10 10:53:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 10:53:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 10:53:02] Further information can be found at the LHC@home message board.
[2026-01-10 10:53:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 10:53:02] Checking for apptainer binary...
[2026-01-10 10:53:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 10:53:02] Running /usr/bin/apptainer --version
[2026-01-10 10:53:02] apptainer version 1.4.5-2.el9
[2026-01-10 10:53:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 10:53:02] c6-5-7-3.aglt2.org
[2026-01-10 10:53:02] apptainer works
[2026-01-10 10:53:02] Set ATHENA_PROC_NUMBER=9
[2026-01-10 10:53:02] Set ATHENA_CORE_NUMBER=9
[2026-01-10 10:53:02] Starting ATLAS job with PandaID=6965384096
[2026-01-10 10:53:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 12:09:58]  *** The last 200 lines of the pilot log: ***
[2026-01-10 12:09:58]  status=None
[2026-01-10 12:09:58]  status_code=0
[2026-01-10 12:09:58]  storage_token=
[2026-01-10 12:09:58]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6965384096/log.47962010._002237.job.log.tgz.1
[2026-01-10 12:09:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/62/6b/log.47962010._002237.job.log.tgz.1
[2026-01-10 12:09:58]  workdir=None
[2026-01-10 12:09:58] ]
[2026-01-10 12:09:58] 2026-01-10 17:08:57,932 | INFO     | transferring file log.47962010._002237.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6965384096/log.47962010._002237.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-10 12:09:58] 2026-01-10 17:08:57,933 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6965384096/log.47962010._002237.job.log.tgz.1 /tmp/boinchome/slots/0/log.47962010._002237.job
[2026-01-10 12:09:58] 2026-01-10 17:08:57,953 | INFO     | adding to output.list: log.47962010._002237.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/62/6b/log.47962010._002237.job.log.tgz.
[2026-01-10 12:09:58] 2026-01-10 17:08:57,954 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 12:09:58] 2026-01-10 17:08:57,954 | INFO     | summary of transferred files:
[2026-01-10 12:09:58] 2026-01-10 17:08:57,954 | INFO     |  -- lfn=log.47962010._002237.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 12:09:58] 2026-01-10 17:08:57,954 | INFO     | stage-out finished correctly
[2026-01-10 12:09:58] 2026-01-10 17:08:58,480 | INFO     | monitor loop #309: job 0:6965384096 is in state 'finished'
[2026-01-10 12:09:58] 2026-01-10 17:08:58,481 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:09:58] 2026-01-10 17:08:58,801 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 12:09:58] 2026-01-10 17:08:58,994 | INFO     | time since job start (4514s) is within the limit (349056.0s)
[2026-01-10 12:09:58] 2026-01-10 17:09:00,986 | INFO     | monitor loop #310: job 0:6965384096 is in state 'finished'
[2026-01-10 12:09:58] 2026-01-10 17:09:00,986 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:09:58] 2026-01-10 17:09:01,005 | INFO     | time since job start (4517s) is within the limit (349056.0s)
[2026-01-10 12:09:58] 2026-01-10 17:09:01,177 | INFO     | job 6965384096 has state=finished
[2026-01-10 12:09:58] 2026-01-10 17:09:01,177 | INFO     | preparing for final server update for job 6965384096 in state='finished'
[2026-01-10 12:09:58] 2026-01-10 17:09:01,179 | INFO     | this job has now completed (state=finished)
[2026-01-10 12:09:58] 2026-01-10 17:09:01,179 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 12:09:58] 2026-01-10 17:09:01,180 | INFO     | log transfer has been attempted: DONE
[2026-01-10 12:09:58] 2026-01-10 17:09:01,180 | INFO     | job 6965384096 has finished - writing final server update
[2026-01-10 12:09:58] 2026-01-10 17:09:01,180 | INFO     | total number of processed events: 50 (read)
[2026-01-10 12:09:58] 2026-01-10 17:09:01,182 | INFO     | executing command: lscpu
[2026-01-10 12:09:58] 2026-01-10 17:09:01,233 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 12:09:58] 2026-01-10 17:09:03,014 | INFO     | time since job start (4519s) is within the limit (349056.0s)
[2026-01-10 12:09:58] 2026-01-10 17:09:03,491 | INFO     | monitor loop #311: job 0:6965384096 is in state 'finished'
[2026-01-10 12:09:58] 2026-01-10 17:09:03,491 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:09:58] 2026-01-10 17:09:04,424 | INFO     | PID=489742 has CPU usage=9.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 12:09:58] 2026-01-10 17:09:04,425 | INFO     | .. there are 9 such processes running
[2026-01-10 12:09:58] 2026-01-10 17:09:05,426 | INFO     | time since job start (4521s) is within the limit (349056.0s)
[2026-01-10 12:09:58] 2026-01-10 17:09:06,018 | INFO     | monitor loop #312: job 0:6965384096 is in state 'finished'
[2026-01-10 12:09:58] 2026-01-10 17:09:06,019 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:09:58] 2026-01-10 17:09:07,359 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-10 12:09:58] 2026-01-10 17:09:07,367 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3099.9698392857144
[2026-01-10 12:09:58] 2026-01-10 17:09:07,377 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6965384096/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 12:09:58] 2026-01-10 17:09:07,378 | INFO     | extracted standard info from prmon json
[2026-01-10 12:09:58] 2026-01-10 17:09:07,378 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 12:09:58] 2026-01-10 17:09:07,378 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 12:09:58] 2026-01-10 17:09:07,380 | INFO     | fitting pss+swap vs Time
[2026-01-10 12:09:58] 2026-01-10 17:09:07,380 | INFO     | sum of square deviations: 93192944.26865669
[2026-01-10 12:09:58] 2026-01-10 17:09:07,380 | INFO     | sum of deviations: -10450260738.328358
[2026-01-10 12:09:58] 2026-01-10 17:09:07,380 | INFO     | mean x: 1768062798.1044776
[2026-01-10 12:09:58] 2026-01-10 17:09:07,380 | INFO     | mean y: 2667386.76119403
[2026-01-10 12:09:58] 2026-01-10 17:09:07,381 | INFO     | intersect: 198265716021.27484
[2026-01-10 12:09:58] 2026-01-10 17:09:07,381 | INFO     | chi2: 0.7336817685688886
[2026-01-10 12:09:58] 2026-01-10 17:09:07,381 | INFO     | current memory leak: -112.14 B/s (using 67 data points, chi2=0.73)
[2026-01-10 12:09:58] 2026-01-10 17:09:07,381 | INFO     | could have reported an average CPU frequency of 3055 MHz (6 samples)
[2026-01-10 12:09:58] 2026-01-10 17:09:07,381 | INFO     | ..............................
[2026-01-10 12:09:58] 2026-01-10 17:09:07,381 | INFO     | . Timing measurements:
[2026-01-10 12:09:58] 2026-01-10 17:09:07,382 | INFO     | . get job = 0 s
[2026-01-10 12:09:58] 2026-01-10 17:09:07,382 | INFO     | . initial setup = 3 s
[2026-01-10 12:09:58] 2026-01-10 17:09:07,382 | INFO     | . payload setup = 16 s
[2026-01-10 12:09:58] 2026-01-10 17:09:07,382 | INFO     | . stage-in = 0 s
[2026-01-10 12:09:58] 2026-01-10 17:09:07,382 | INFO     | . payload execution = 4469 s
[2026-01-10 12:09:58] 2026-01-10 17:09:07,382 | INFO     | . stage-out = 0 s
[2026-01-10 12:09:58] 2026-01-10 17:09:07,382 | INFO     | . log creation = 0 s
[2026-01-10 12:09:58] 2026-01-10 17:09:07,382 | INFO     | ..............................
[2026-01-10 12:09:58] 2026-01-10 17:09:07,447 | INFO     | time since job start (4523s) is within the limit (349056.0s)
[2026-01-10 12:09:58] 2026-01-10 17:09:07,465 | INFO     | 
[2026-01-10 12:09:58] 2026-01-10 17:09:07,466 | INFO     | job summary report
[2026-01-10 12:09:58] 2026-01-10 17:09:07,466 | INFO     | --------------------------------------------------
[2026-01-10 12:09:58] 2026-01-10 17:09:07,466 | INFO     | PanDA job id: 6965384096
[2026-01-10 12:09:58] 2026-01-10 17:09:07,466 | INFO     | task id: 47962010
[2026-01-10 12:09:58] 2026-01-10 17:09:07,466 | INFO     | errors: (none)
[2026-01-10 12:09:58] 2026-01-10 17:09:07,466 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 12:09:58] 2026-01-10 17:09:07,466 | INFO     | pilot state: finished 
[2026-01-10 12:09:58] 2026-01-10 17:09:07,466 | INFO     | transexitcode: 0
[2026-01-10 12:09:58] 2026-01-10 17:09:07,466 | INFO     | exeerrorcode: 0
[2026-01-10 12:09:58] 2026-01-10 17:09:07,466 | INFO     | exeerrordiag: 
[2026-01-10 12:09:58] 2026-01-10 17:09:07,466 | INFO     | exitcode: 0
[2026-01-10 12:09:58] 2026-01-10 17:09:07,466 | INFO     | exitmsg: OK
[2026-01-10 12:09:58] 2026-01-10 17:09:07,466 | INFO     | cpuconsumptiontime: 14572 s
[2026-01-10 12:09:58] 2026-01-10 17:09:07,467 | INFO     | nevents: 50
[2026-01-10 12:09:58] 2026-01-10 17:09:07,467 | INFO     | neventsw: 0
[2026-01-10 12:09:58] 2026-01-10 17:09:07,467 | INFO     | pid: 497042
[2026-01-10 12:09:58] 2026-01-10 17:09:07,467 | INFO     | pgrp: 497042
[2026-01-10 12:09:58] 2026-01-10 17:09:07,467 | INFO     | corecount: 9
[2026-01-10 12:09:58] 2026-01-10 17:09:07,467 | INFO     | event service: False
[2026-01-10 12:09:58] 2026-01-10 17:09:07,467 | INFO     | sizes: {0: 2284569, 1: 2284569, 7: 2284859, 12: 2284887, 4490: 2311701, 4492: 2320695, 4493: 2320879, 4501: 2321125}
[2026-01-10 12:09:58] 2026-01-10 17:09:07,467 | INFO     | --------------------------------------------------
[2026-01-10 12:09:58] 2026-01-10 17:09:07,467 | INFO     | 
[2026-01-10 12:09:58] 2026-01-10 17:09:07,467 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-10 12:09:58] 2026-01-10 17:09:07,486 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 12:09:58] 2026-01-10 17:09:07,486 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 12:09:58] 2026-01-10 17:09:07,486 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 12:09:58] 2026-01-10 17:09:07,486 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 12:09:58] 2026-01-10 17:09:07,486 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 12:09:58] 2026-01-10 17:09:07,486 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 12:09:58] 2026-01-10 17:09:07,487 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 12:09:58] 2026-01-10 17:09:07,487 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 12:09:58] 2026-01-10 17:09:07,487 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 12:09:58] 2026-01-10 17:09:07,487 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 12:09:58] 2026-01-10 17:09:07,487 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 12:09:58] 2026-01-10 17:09:07,487 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 12:09:58] 2026-01-10 17:09:07,487 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 12:09:58] 2026-01-10 17:09:07,487 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 12:09:58] 2026-01-10 17:09:07,487 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 12:09:58] 2026-01-10 17:09:07,487 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 12:09:58] 2026-01-10 17:09:07,487 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 12:09:58] 2026-01-10 17:09:07,487 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 12:09:58] 2026-01-10 17:09:07,488 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 12:09:58] 2026-01-10 17:09:07,488 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 12:09:58] 2026-01-10 17:09:07,488 | INFO     | job 6965384096 has completed (purged errors)
[2026-01-10 12:09:58] 2026-01-10 17:09:07,488 | INFO     | overall cleanup function is called
[2026-01-10 12:09:58] 2026-01-10 17:09:08,503 | INFO     | --- collectZombieJob: --- 10, [497042]
[2026-01-10 12:09:58] 2026-01-10 17:09:08,503 | INFO     | zombie collector waiting for pid 497042
[2026-01-10 12:09:58] 2026-01-10 17:09:08,503 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 12:09:58] 2026-01-10 17:09:08,503 | INFO     | collected zombie processes
[2026-01-10 12:09:58] 2026-01-10 17:09:08,503 | INFO     | will attempt to kill all subprocesses of pid=497042
[2026-01-10 12:09:58] 2026-01-10 17:09:08,771 | INFO     | process IDs to be killed: [497042] (in reverse order)
[2026-01-10 12:09:58] 2026-01-10 17:09:08,851 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 12:09:58] 2026-01-10 17:09:08,852 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 12:09:58] 2026-01-10 17:09:08,862 | INFO     | did not find any defunct processes belonging to 497042
[2026-01-10 12:09:58] 2026-01-10 17:09:08,872 | INFO     | did not find any defunct processes belonging to 497042
[2026-01-10 12:09:58] 2026-01-10 17:09:08,872 | INFO     | ready for new job
[2026-01-10 12:09:58] 2026-01-10 17:09:08,872 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 12:09:58] 2026-01-10 17:09:08,874 | INFO     | ***************************************
[2026-01-10 12:09:58] 2026-01-10 17:09:08,874 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 12:09:58] 2026-01-10 17:09:08,874 | INFO     | ***************************************
[2026-01-10 12:09:58] 2026-01-10 17:09:08,874 | INFO     | 
[2026-01-10 12:09:58] 2026-01-10 17:09:08,877 | INFO     | architecture information:
[2026-01-10 12:09:58] 2026-01-10 17:09:08,878 | INFO     | executing command: cat /etc/os-release
[2026-01-10 12:09:58] 2026-01-10 17:09:08,891 | INFO     | cat /etc/os-release:
[2026-01-10 12:09:58] NAME="CentOS Linux"
[2026-01-10 12:09:58] VERSION="7 (Core)"
[2026-01-10 12:09:58] ID="centos"
[2026-01-10 12:09:58] ID_LIKE="rhel fedora"
[2026-01-10 12:09:58] VERSION_ID="7"
[2026-01-10 12:09:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 12:09:58] ANSI_COLOR="0;31"
[2026-01-10 12:09:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 12:09:58] HOME_URL="https://www.centos.org/"
[2026-01-10 12:09:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 12:09:58] 
[2026-01-10 12:09:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 12:09:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 12:09:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 12:09:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 12:09:58] 
[2026-01-10 12:09:58] 2026-01-10 17:09:08,891 | INFO     | ***************************************
[2026-01-10 12:09:58] 2026-01-10 17:09:09,405 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-10 12:09:58] 2026-01-10 17:09:09,474 | INFO     | sufficient remaining disk space (74785488896 B)
[2026-01-10 12:09:58] 2026-01-10 17:09:09,475 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 12:09:58] 2026-01-10 17:09:09,475 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 12:09:58] 2026-01-10 17:09:09,475 | INFO     | update_server=False
[2026-01-10 12:09:58] 2026-01-10 17:09:09,475 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 12:09:58] 2026-01-10 17:09:09,475 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 12:09:58] 2026-01-10 17:09:09,475 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 12:09:58] 2026-01-10 17:09:09,538 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:09:58] 2026-01-10 17:09:09,538 | INFO     | aborting loop
[2026-01-10 12:09:58] 2026-01-10 17:09:09,904 | INFO     | all payload control threads have been joined
[2026-01-10 12:09:58] 2026-01-10 17:09:10,193 | INFO     | all job control threads have been joined
[2026-01-10 12:09:58] 2026-01-10 17:09:10,263 | INFO     | all data control threads have been joined
[2026-01-10 12:09:58] 2026-01-10 17:09:10,481 | INFO     | [job] retrieve thread has finished
[2026-01-10 12:09:58] 2026-01-10 17:09:10,544 | INFO     | [job] job monitor thread has finished
[2026-01-10 12:09:58] 2026-01-10 17:09:10,910 | INFO     | [payload] control thread has finished
[2026-01-10 12:09:58] 2026-01-10 17:09:11,044 | INFO     | [job] validate thread has finished
[2026-01-10 12:09:58] 2026-01-10 17:09:11,130 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 12:09:58] 2026-01-10 17:09:11,198 | INFO     | [job] control thread has finished
[2026-01-10 12:09:58] 2026-01-10 17:09:11,214 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 12:09:58] 2026-01-10 17:09:11,268 | INFO     | [data] control thread has finished
[2026-01-10 12:09:58] 2026-01-10 17:09:11,406 | INFO     | [payload] validate_post thread has finished
[2026-01-10 12:09:58] 2026-01-10 17:09:11,480 | INFO     | [data] copytool_out thread has finished
[2026-01-10 12:09:58] 2026-01-10 17:09:11,746 | INFO     | [data] copytool_in thread has finished
[2026-01-10 12:09:58] 2026-01-10 17:09:11,803 | INFO     | [payload] failed_post thread has finished
[2026-01-10 12:09:58] 2026-01-10 17:09:11,896 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 12:09:58] 2026-01-10 17:09:12,477 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:09:58] 2026-01-10 17:09:13,482 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 12:09:58] 2026-01-10 17:09:13,483 | INFO     | [job] queue monitor thread has finished
[2026-01-10 12:09:58] 2026-01-10 17:09:20,305 | INFO     | job.realtimelogging is not enabled
[2026-01-10 12:09:58] 2026-01-10 17:09:21,311 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 12:09:58] 2026-01-10 17:09:40,832 | INFO     | PID=489742 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 12:09:58] 2026-01-10 17:09:40,832 | INFO     | .. there are 9 such processes running
[2026-01-10 12:09:58] 2026-01-10 17:09:40,832 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 12:09:58] 2026-01-10 17:09:40,832 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 12:09:58] 2026-01-10 17:09:40,832 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 12:09:58] 2026-01-10 17:09:51,952 | INFO     | [monitor] cgroup control has ended
[2026-01-10 12:09:58] 2026-01-10 17:09:52,983 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140280572938048)>', '<ExcThread(monitor, started 140280300803840)>']
[2026-01-10 12:09:58] 2026-01-10 17:09:53,914 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 12:09:58] 2026-01-10 17:09:53,914 | INFO     | [monitor] control thread has ended
[2026-01-10 12:09:58] 2026-01-10 17:09:58,009 | INFO     | all workflow threads have been joined
[2026-01-10 12:09:58] 2026-01-10 17:09:58,009 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 12:09:58] 2026-01-10 17:09:58,009 | INFO     | traces error code: 0
[2026-01-10 12:09:58] 2026-01-10 17:09:58,010 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 12:09:58] 2026-01-10 17:09:58,165 [wrapper] ==== pilot stdout END ====
[2026-01-10 12:09:58] 2026-01-10 17:09:58,168 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 12:09:58] 2026-01-10 17:09:58,170 [wrapper] pilotpid: 489742
[2026-01-10 12:09:58] 2026-01-10 17:09:58,173 [wrapper] Pilot exit status: 0
[2026-01-10 12:09:58] 2026-01-10 17:09:58,230 [wrapper] pandaids: 6965384096
[2026-01-10 12:09:58] 2026-01-10 17:09:58,309 [wrapper] cleanup supervisor_pilot  643397 489743
[2026-01-10 12:09:58] 2026-01-10 17:09:58,313 [wrapper] Test setup, not cleaning
[2026-01-10 12:09:58] 2026-01-10 17:09:58,316 [wrapper] apfmon messages muted
[2026-01-10 12:09:58] 2026-01-10 17:09:58,318 [wrapper] ==== wrapper stdout END ====
[2026-01-10 12:09:58] 2026-01-10 17:09:58,322 [wrapper] ==== wrapper stderr END ====
[2026-01-10 12:09:58]  *** Error codes and diagnostics ***
[2026-01-10 12:09:58]     "exeErrorCode": 0,
[2026-01-10 12:09:58]     "exeErrorDiag": "",
[2026-01-10 12:09:58]     "pilotErrorCode": 0,
[2026-01-10 12:09:58]     "pilotErrorDiag": "",
[2026-01-10 12:09:58]  *** Listing of results directory ***
[2026-01-10 12:09:58] total 436560
[2026-01-10 12:09:58] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:13 queuedata.json
[2026-01-10 12:09:58] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:14 pilot3.tar.gz
[2026-01-10 12:09:58] -rwx------. 1 boincer umatlas     36322 Jan 10 08:14 runpilot2-wrapper.sh
[2026-01-10 12:09:58] -rw-r--r--. 1 boincer umatlas       100 Jan 10 10:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 12:09:58] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 10:52 run_atlas
[2026-01-10 12:09:58] -rw-r--r--. 1 boincer umatlas       105 Jan 10 10:52 job.xml
[2026-01-10 12:09:58] -rw-r--r--. 2 boincer umatlas 393525946 Jan 10 10:52 EVNT.47962006._000076.pool.root.1
[2026-01-10 12:09:58] -rw-r--r--. 2 boincer umatlas    592620 Jan 10 10:52 input.tar.gz
[2026-01-10 12:09:58] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 10:52 start_atlas.sh
[2026-01-10 12:09:58] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 10:52 shared
[2026-01-10 12:09:58] -rw-r--r--. 1 boincer umatlas         0 Jan 10 10:52 boinc_lockfile
[2026-01-10 12:09:58] -rw-r--r--. 1 boincer umatlas      2890 Jan 10 10:53 pandaJob.out
[2026-01-10 12:09:58] -rw-------. 1 boincer umatlas        57 Jan 10 10:53 setup.sh.local
[2026-01-10 12:09:58] -rw-------. 1 boincer umatlas    989556 Jan 10 10:53 agis_schedconf.cvmfs.json
[2026-01-10 12:09:58] -rw-------. 1 boincer umatlas   1516240 Jan 10 10:53 agis_ddmendpoints.agis.ALL.json
[2026-01-10 12:09:58] drwx------. 5 boincer umatlas      4096 Jan 10 10:53 pilot3
[2026-01-10 12:09:58] -rw-r--r--. 1 boincer umatlas       529 Jan 10 11:57 boinc_task_state.xml
[2026-01-10 12:09:58] -rw-r--r--. 1 boincer umatlas      6842 Jan 10 12:03 init_data.xml
[2026-01-10 12:09:58] -rw-------. 1 boincer umatlas  45681746 Jan 10 12:08 HITS.47962010._002237.pool.root.1
[2026-01-10 12:09:58] -rw-------. 1 boincer umatlas      1056 Jan 10 12:08 memory_monitor_summary.json
[2026-01-10 12:09:58] -rw-------. 1 boincer umatlas   1306281 Jan 10 12:08 log.47962010._002237.job.log.tgz.1
[2026-01-10 12:09:58] -rw-------. 1 boincer umatlas        95 Jan 10 12:09 pilot_heartbeat.json
[2026-01-10 12:09:58] -rw-------. 1 boincer umatlas      8570 Jan 10 12:09 heartbeat.json
[2026-01-10 12:09:58] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 12:09 boinc_mmap_file
[2026-01-10 12:09:58] -rw-r--r--. 1 boincer umatlas        27 Jan 10 12:09 wrapper_checkpoint.txt
[2026-01-10 12:09:58] -rw-------. 1 boincer umatlas      4894 Jan 10 12:09 pilotlog.txt
[2026-01-10 12:09:58] -rw-------. 1 boincer umatlas    646391 Jan 10 12:09 log.47962010._002237.job.log.1
[2026-01-10 12:09:58] -rw-------. 1 boincer umatlas       353 Jan 10 12:09 output.list
[2026-01-10 12:09:58] -rw-r--r--. 1 boincer umatlas       620 Jan 10 12:09 runtime_log
[2026-01-10 12:09:58] -rw-------. 1 boincer umatlas   1976320 Jan 10 12:09 result.tar.gz
[2026-01-10 12:09:58] -rw-r--r--. 1 boincer umatlas      9342 Jan 10 12:09 runtime_log.err
[2026-01-10 12:09:58] -rw-------. 1 boincer umatlas       652 Jan 10 12:09 35sMDmPyny8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpnmKDmZXadem.diag
[2026-01-10 12:09:58] -rw-r--r--. 1 boincer umatlas     22191 Jan 10 12:09 stderr.txt
[2026-01-10 12:09:58] HITS file was successfully produced:
[2026-01-10 12:09:58] -rw-------. 1 boincer umatlas 45681746 Jan 10 12:08 shared/HITS.pool.root.1
[2026-01-10 12:09:58]  *** Contents of shared directory: ***
[2026-01-10 12:09:58] total 431452
[2026-01-10 12:09:58] -rw-r--r--. 2 boincer umatlas 393525946 Jan 10 10:52 ATLAS.root_0
[2026-01-10 12:09:58] -rw-r--r--. 2 boincer umatlas    592620 Jan 10 10:52 input.tar.gz
[2026-01-10 12:09:58] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 10:52 start_atlas.sh
[2026-01-10 12:09:58] -rw-------. 1 boincer umatlas  45681746 Jan 10 12:08 HITS.pool.root.1
[2026-01-10 12:09:58] -rw-------. 1 boincer umatlas   1976320 Jan 10 12:09 result.tar.gz
12:09:59 (484927): run_atlas exited; CPU time 14573.043674
12:09:59 (484927): called boinc_finish(0)

</stderr_txt>
]]>

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