Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:30:59 (3195022): wrapper (7.7.26015): starting
10:30:59 (3195022): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 10:30:59] Arguments: --nthreads 8
[2026-01-10 10:30:59] Threads: 8
[2026-01-10 10:30:59] Checking for CVMFS
[2026-01-10 10:31:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 10:31:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 10:31:00] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 10:31:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 10:31:01] 2.13.3.0 10954 95031 405540 154984 3 361 26218098 32935936 9830 16776704 26 362822915 99.474 529231173 38299 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 10:31:01] CVMFS is ok
[2026-01-10 10:31:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 10:31:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 10:31:01] Further information can be found at the LHC@home message board.
[2026-01-10 10:31:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 10:31:01] Checking for apptainer binary...
[2026-01-10 10:31:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 10:31:01] Running /usr/bin/apptainer --version
[2026-01-10 10:31:01] apptainer version 1.4.5-2.el9
[2026-01-10 10:31:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 10:31:02] c7-11-13.aglt2.org
[2026-01-10 10:31:02] apptainer works
[2026-01-10 10:31:02] Set ATHENA_PROC_NUMBER=8
[2026-01-10 10:31:02] Set ATHENA_CORE_NUMBER=8
[2026-01-10 10:31:03] Starting ATLAS job with PandaID=6965384242
[2026-01-10 10:31:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 11:48:37]  *** The last 200 lines of the pilot log: ***
[2026-01-10 11:48:37]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-10 11:48:37]  replicas=None
[2026-01-10 11:48:37]  scope=mc16_13TeV
[2026-01-10 11:48:37]  status=None
[2026-01-10 11:48:37]  status_code=0
[2026-01-10 11:48:37]  storage_token=
[2026-01-10 11:48:37]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6965384242/log.47962010._002383.job.log.tgz.1
[2026-01-10 11:48:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/26/fb/log.47962010._002383.job.log.tgz.1
[2026-01-10 11:48:37]  workdir=None
[2026-01-10 11:48:37] ]
[2026-01-10 11:48:37] 2026-01-10 16:47:44,871 | INFO     | time since job start (4521s) is within the limit (349056.0s)
[2026-01-10 11:48:37] 2026-01-10 16:47:44,887 | INFO     | transferring file log.47962010._002383.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6965384242/log.47962010._002383.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-10 11:48:37] 2026-01-10 16:47:44,887 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6965384242/log.47962010._002383.job.log.tgz.1 /tmp/boinchome/slots/1/log.47962010._002383.job
[2026-01-10 11:48:37] 2026-01-10 16:47:44,910 | INFO     | adding to output.list: log.47962010._002383.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/26/fb/log.47962010._002383.job.log.tgz.
[2026-01-10 11:48:37] 2026-01-10 16:47:44,911 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 11:48:37] 2026-01-10 16:47:44,911 | INFO     | summary of transferred files:
[2026-01-10 11:48:37] 2026-01-10 16:47:44,911 | INFO     |  -- lfn=log.47962010._002383.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 11:48:37] 2026-01-10 16:47:44,912 | INFO     | stage-out finished correctly
[2026-01-10 11:48:37] 2026-01-10 16:47:46,893 | INFO     | time since job start (4523s) is within the limit (349056.0s)
[2026-01-10 11:48:37] 2026-01-10 16:47:46,959 | INFO     | monitor loop #332: job 0:6965384242 is in state 'finished'
[2026-01-10 11:48:37] 2026-01-10 16:47:46,961 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 11:48:37] 2026-01-10 16:47:47,357 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 11:48:37] 2026-01-10 16:47:48,586 | INFO     | job 6965384242 has state=finished
[2026-01-10 11:48:37] 2026-01-10 16:47:48,586 | INFO     | preparing for final server update for job 6965384242 in state='finished'
[2026-01-10 11:48:37] 2026-01-10 16:47:48,593 | INFO     | this job has now completed (state=finished)
[2026-01-10 11:48:37] 2026-01-10 16:47:48,593 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 11:48:37] 2026-01-10 16:47:48,593 | INFO     | log transfer has been attempted: DONE
[2026-01-10 11:48:37] 2026-01-10 16:47:48,593 | INFO     | job 6965384242 has finished - writing final server update
[2026-01-10 11:48:37] 2026-01-10 16:47:48,593 | INFO     | total number of processed events: 50 (read)
[2026-01-10 11:48:37] 2026-01-10 16:47:48,601 | INFO     | executing command: lscpu
[2026-01-10 11:48:37] 2026-01-10 16:47:48,656 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 11:48:37] 2026-01-10 16:47:48,900 | INFO     | time since job start (4525s) is within the limit (349056.0s)
[2026-01-10 11:48:37] 2026-01-10 16:47:49,468 | INFO     | monitor loop #333: job 0:6965384242 is in state 'finished'
[2026-01-10 11:48:37] 2026-01-10 16:47:49,469 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 11:48:37] 2026-01-10 16:47:50,316 | INFO     | PID=3201063 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 11:48:37] 2026-01-10 16:47:50,316 | INFO     | .. there are 10 such processes running
[2026-01-10 11:48:37] 2026-01-10 16:47:51,317 | INFO     | time since job start (4528s) is within the limit (349056.0s)
[2026-01-10 11:48:37] 2026-01-10 16:47:51,974 | INFO     | monitor loop #334: job 0:6965384242 is in state 'finished'
[2026-01-10 11:48:37] 2026-01-10 16:47:51,974 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 11:48:37] 2026-01-10 16:47:53,300 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 11:48:37] 2026-01-10 16:47:53,304 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3292.279546875
[2026-01-10 11:48:37] 2026-01-10 16:47:53,314 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6965384242/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 11:48:37] 2026-01-10 16:47:53,315 | INFO     | extracted standard info from prmon json
[2026-01-10 11:48:37] 2026-01-10 16:47:53,315 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 11:48:37] 2026-01-10 16:47:53,315 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 11:48:37] 2026-01-10 16:47:53,317 | INFO     | fitting pss+swap vs Time
[2026-01-10 11:48:37] 2026-01-10 16:47:53,317 | INFO     | sum of square deviations: 85128318.98461537
[2026-01-10 11:48:37] 2026-01-10 16:47:53,318 | INFO     | sum of deviations: 27784445403.92308
[2026-01-10 11:48:37] 2026-01-10 16:47:53,318 | INFO     | mean x: 1768061550.2153847
[2026-01-10 11:48:37] 2026-01-10 16:47:53,318 | INFO     | mean y: 2345176.076923077
[2026-01-10 11:48:37] 2026-01-10 16:47:53,318 | INFO     | intersect: -577063080274.3293
[2026-01-10 11:48:37] 2026-01-10 16:47:53,318 | INFO     | chi2: 4.4316207528985245
[2026-01-10 11:48:37] 2026-01-10 16:47:53,318 | INFO     | current memory leak: 326.38 B/s (using 65 data points, chi2=4.43)
[2026-01-10 11:48:37] 2026-01-10 16:47:53,318 | INFO     | could have reported an average CPU frequency of 3291 MHz (6 samples)
[2026-01-10 11:48:37] 2026-01-10 16:47:53,319 | INFO     | ..............................
[2026-01-10 11:48:37] 2026-01-10 16:47:53,319 | INFO     | . Timing measurements:
[2026-01-10 11:48:37] 2026-01-10 16:47:53,319 | INFO     | . get job = 0 s
[2026-01-10 11:48:37] 2026-01-10 16:47:53,319 | INFO     | . initial setup = 4 s
[2026-01-10 11:48:37] 2026-01-10 16:47:53,319 | INFO     | . payload setup = 49 s
[2026-01-10 11:48:37] 2026-01-10 16:47:53,319 | INFO     | . stage-in = 0 s
[2026-01-10 11:48:37] 2026-01-10 16:47:53,319 | INFO     | . payload execution = 4391 s
[2026-01-10 11:48:37] 2026-01-10 16:47:53,319 | INFO     | . stage-out = 1 s
[2026-01-10 11:48:37] 2026-01-10 16:47:53,319 | INFO     | . log creation = 0 s
[2026-01-10 11:48:37] 2026-01-10 16:47:53,319 | INFO     | ..............................
[2026-01-10 11:48:37] 2026-01-10 16:47:53,334 | INFO     | time since job start (4530s) is within the limit (349056.0s)
[2026-01-10 11:48:37] 2026-01-10 16:47:53,401 | INFO     | 
[2026-01-10 11:48:37] 2026-01-10 16:47:53,402 | INFO     | job summary report
[2026-01-10 11:48:37] 2026-01-10 16:47:53,402 | INFO     | --------------------------------------------------
[2026-01-10 11:48:37] 2026-01-10 16:47:53,402 | INFO     | PanDA job id: 6965384242
[2026-01-10 11:48:37] 2026-01-10 16:47:53,402 | INFO     | task id: 47962010
[2026-01-10 11:48:37] 2026-01-10 16:47:53,402 | INFO     | errors: (none)
[2026-01-10 11:48:37] 2026-01-10 16:47:53,402 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 11:48:37] 2026-01-10 16:47:53,402 | INFO     | pilot state: finished 
[2026-01-10 11:48:37] 2026-01-10 16:47:53,402 | INFO     | transexitcode: 0
[2026-01-10 11:48:37] 2026-01-10 16:47:53,403 | INFO     | exeerrorcode: 0
[2026-01-10 11:48:37] 2026-01-10 16:47:53,403 | INFO     | exeerrordiag: 
[2026-01-10 11:48:37] 2026-01-10 16:47:53,403 | INFO     | exitcode: 0
[2026-01-10 11:48:37] 2026-01-10 16:47:53,403 | INFO     | exitmsg: OK
[2026-01-10 11:48:37] 2026-01-10 16:47:53,403 | INFO     | cpuconsumptiontime: 11084 s
[2026-01-10 11:48:37] 2026-01-10 16:47:53,403 | INFO     | nevents: 50
[2026-01-10 11:48:37] 2026-01-10 16:47:53,403 | INFO     | neventsw: 0
[2026-01-10 11:48:37] 2026-01-10 16:47:53,403 | INFO     | pid: 3210724
[2026-01-10 11:48:37] 2026-01-10 16:47:53,403 | INFO     | pgrp: 3210724
[2026-01-10 11:48:37] 2026-01-10 16:47:53,403 | INFO     | corecount: 8
[2026-01-10 11:48:37] 2026-01-10 16:47:53,403 | INFO     | event service: False
[2026-01-10 11:48:37] 2026-01-10 16:47:53,403 | INFO     | sizes: {0: 2283741, 1: 2284597, 2: 2284597, 13: 2284625, 25: 2284681, 36: 2284709, 42: 2285127, 47: 2285183, 4444: 2312068, 4445: 2321062, 4447: 2321118, 4453: 232
[2026-01-10 11:48:37] 2026-01-10 16:47:53,403 | INFO     | --------------------------------------------------
[2026-01-10 11:48:37] 2026-01-10 16:47:53,403 | INFO     | 
[2026-01-10 11:48:37] 2026-01-10 16:47:53,404 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-10 11:48:37] 2026-01-10 16:47:53,467 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 11:48:37] 2026-01-10 16:47:53,468 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 11:48:37] 2026-01-10 16:47:53,468 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 11:48:37] 2026-01-10 16:47:53,468 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 11:48:37] 2026-01-10 16:47:53,468 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 11:48:37] 2026-01-10 16:47:53,468 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 11:48:37] 2026-01-10 16:47:53,468 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 11:48:37] 2026-01-10 16:47:53,468 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 11:48:37] 2026-01-10 16:47:53,468 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 11:48:37] 2026-01-10 16:47:53,468 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 11:48:37] 2026-01-10 16:47:53,468 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 11:48:37] 2026-01-10 16:47:53,469 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 11:48:37] 2026-01-10 16:47:53,469 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 11:48:37] 2026-01-10 16:47:53,469 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 11:48:37] 2026-01-10 16:47:53,469 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 11:48:37] 2026-01-10 16:47:53,469 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 11:48:37] 2026-01-10 16:47:53,469 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 11:48:37] 2026-01-10 16:47:53,469 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 11:48:37] 2026-01-10 16:47:53,469 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 11:48:37] 2026-01-10 16:47:53,469 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 11:48:37] 2026-01-10 16:47:53,469 | INFO     | job 6965384242 has completed (purged errors)
[2026-01-10 11:48:37] 2026-01-10 16:47:53,470 | INFO     | overall cleanup function is called
[2026-01-10 11:48:37] 2026-01-10 16:47:54,582 | INFO     | --- collectZombieJob: --- 10, [3210724]
[2026-01-10 11:48:37] 2026-01-10 16:47:54,582 | INFO     | zombie collector waiting for pid 3210724
[2026-01-10 11:48:37] 2026-01-10 16:47:54,582 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 11:48:37] 2026-01-10 16:47:54,582 | INFO     | collected zombie processes
[2026-01-10 11:48:37] 2026-01-10 16:47:54,582 | INFO     | will attempt to kill all subprocesses of pid=3210724
[2026-01-10 11:48:37] 2026-01-10 16:47:55,225 | INFO     | process IDs to be killed: [3210724] (in reverse order)
[2026-01-10 11:48:37] 2026-01-10 16:47:55,327 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 11:48:37] 2026-01-10 16:47:55,328 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 11:48:37] 2026-01-10 16:47:55,338 | INFO     | did not find any defunct processes belonging to 3210724
[2026-01-10 11:48:37] 2026-01-10 16:47:55,346 | INFO     | did not find any defunct processes belonging to 3210724
[2026-01-10 11:48:37] 2026-01-10 16:47:55,346 | INFO     | ready for new job
[2026-01-10 11:48:37] 2026-01-10 16:47:55,347 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 11:48:37] 2026-01-10 16:47:55,349 | INFO     | ***************************************
[2026-01-10 11:48:37] 2026-01-10 16:47:55,350 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 11:48:37] 2026-01-10 16:47:55,350 | INFO     | ***************************************
[2026-01-10 11:48:37] 2026-01-10 16:47:55,350 | INFO     | 
[2026-01-10 11:48:37] 2026-01-10 16:47:55,376 | INFO     | architecture information:
[2026-01-10 11:48:37] 2026-01-10 16:47:55,377 | INFO     | executing command: cat /etc/os-release
[2026-01-10 11:48:37] 2026-01-10 16:47:55,393 | INFO     | cat /etc/os-release:
[2026-01-10 11:48:37] NAME="CentOS Linux"
[2026-01-10 11:48:37] VERSION="7 (Core)"
[2026-01-10 11:48:37] ID="centos"
[2026-01-10 11:48:37] ID_LIKE="rhel fedora"
[2026-01-10 11:48:37] VERSION_ID="7"
[2026-01-10 11:48:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 11:48:37] ANSI_COLOR="0;31"
[2026-01-10 11:48:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 11:48:37] HOME_URL="https://www.centos.org/"
[2026-01-10 11:48:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 11:48:37] 
[2026-01-10 11:48:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 11:48:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 11:48:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 11:48:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 11:48:37] 
[2026-01-10 11:48:37] 2026-01-10 16:47:55,394 | INFO     | ***************************************
[2026-01-10 11:48:37] 2026-01-10 16:47:55,896 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-10 11:48:37] 2026-01-10 16:47:55,918 | INFO     | sufficient remaining disk space (95569313792 B)
[2026-01-10 11:48:37] 2026-01-10 16:47:55,919 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 11:48:37] 2026-01-10 16:47:55,919 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 11:48:37] 2026-01-10 16:47:55,919 | INFO     | update_server=False
[2026-01-10 11:48:37] 2026-01-10 16:47:55,919 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 11:48:37] 2026-01-10 16:47:55,920 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 11:48:37] 2026-01-10 16:47:55,924 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 11:48:37] 2026-01-10 16:47:55,924 | INFO     | aborting loop
[2026-01-10 11:48:37] 2026-01-10 16:47:55,970 | INFO     | all data control threads have been joined
[2026-01-10 11:48:37] 2026-01-10 16:47:56,475 | INFO     | all payload control threads have been joined
[2026-01-10 11:48:37] 2026-01-10 16:47:56,682 | INFO     | all job control threads have been joined
[2026-01-10 11:48:37] 2026-01-10 16:47:56,927 | INFO     | [job] retrieve thread has finished
[2026-01-10 11:48:37] 2026-01-10 16:47:56,930 | INFO     | [job] job monitor thread has finished
[2026-01-10 11:48:37] 2026-01-10 16:47:56,976 | INFO     | [data] control thread has finished
[2026-01-10 11:48:37] 2026-01-10 16:47:57,262 | INFO     | [payload] failed_post thread has finished
[2026-01-10 11:48:37] 2026-01-10 16:47:57,469 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 11:48:37] 2026-01-10 16:47:57,480 | INFO     | [payload] control thread has finished
[2026-01-10 11:48:37] 2026-01-10 16:47:57,653 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 11:48:37] 2026-01-10 16:47:57,669 | INFO     | [job] validate thread has finished
[2026-01-10 11:48:37] 2026-01-10 16:47:57,672 | INFO     | [payload] validate_post thread has finished
[2026-01-10 11:48:37] 2026-01-10 16:47:57,688 | INFO     | [job] control thread has finished
[2026-01-10 11:48:37] 2026-01-10 16:47:57,892 | INFO     | [data] copytool_in thread has finished
[2026-01-10 11:48:37] 2026-01-10 16:47:57,927 | INFO     | [data] copytool_out thread has finished
[2026-01-10 11:48:37] 2026-01-10 16:47:57,969 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 11:48:37] 2026-01-10 16:47:58,025 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 11:48:37] 2026-01-10 16:47:58,219 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 11:48:37] 2026-01-10 16:47:58,414 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 11:48:37] 2026-01-10 16:47:59,421 | INFO     | [job] queue monitor thread has finished
[2026-01-10 11:48:37] 2026-01-10 16:48:01,975 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 11:48:37] 2026-01-10 16:48:27,239 | INFO     | PID=3201063 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 11:48:37] 2026-01-10 16:48:27,240 | INFO     | .. there are 10 such processes running
[2026-01-10 11:48:37] 2026-01-10 16:48:27,240 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 11:48:37] 2026-01-10 16:48:27,240 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 11:48:37] 2026-01-10 16:48:27,240 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 11:48:37] 2026-01-10 16:48:30,030 | INFO     | [monitor] cgroup control has ended
[2026-01-10 11:48:37] 2026-01-10 16:48:31,601 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139821048670016)>', '<ExcThread(monitor, started 139820529587968)>']
[2026-01-10 11:48:37] 2026-01-10 16:48:32,271 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 11:48:37] 2026-01-10 16:48:32,271 | INFO     | [monitor] control thread has ended
[2026-01-10 11:48:37] 2026-01-10 16:48:36,627 | INFO     | all workflow threads have been joined
[2026-01-10 11:48:37] 2026-01-10 16:48:36,627 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 11:48:37] 2026-01-10 16:48:36,627 | INFO     | traces error code: 0
[2026-01-10 11:48:37] 2026-01-10 16:48:36,628 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 11:48:37] 2026-01-10 16:48:37,588 [wrapper] ==== pilot stdout END ====
[2026-01-10 11:48:37] 2026-01-10 16:48:37,592 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 11:48:37] 2026-01-10 16:48:37,601 [wrapper] pilotpid: 3201063
[2026-01-10 11:48:37] 2026-01-10 16:48:37,608 [wrapper] Pilot exit status: 0
[2026-01-10 11:48:37] 2026-01-10 16:48:37,632 [wrapper] pandaids: 6965384242
[2026-01-10 11:48:37] 2026-01-10 16:48:37,710 [wrapper] cleanup supervisor_pilot 3316405 3201064
[2026-01-10 11:48:37] 2026-01-10 16:48:37,717 [wrapper] Test setup, not cleaning
[2026-01-10 11:48:37] 2026-01-10 16:48:37,720 [wrapper] apfmon messages muted
[2026-01-10 11:48:37] 2026-01-10 16:48:37,722 [wrapper] ==== wrapper stdout END ====
[2026-01-10 11:48:37] 2026-01-10 16:48:37,725 [wrapper] ==== wrapper stderr END ====
[2026-01-10 11:48:37]  *** Error codes and diagnostics ***
[2026-01-10 11:48:37]     "exeErrorCode": 0,
[2026-01-10 11:48:37]     "exeErrorDiag": "",
[2026-01-10 11:48:37]     "pilotErrorCode": 0,
[2026-01-10 11:48:37]     "pilotErrorDiag": "",
[2026-01-10 11:48:37]  *** Listing of results directory ***
[2026-01-10 11:48:37] total 431772
[2026-01-10 11:48:37] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:13 queuedata.json
[2026-01-10 11:48:37] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:14 pilot3.tar.gz
[2026-01-10 11:48:37] -rwx------. 1 boincer umatlas     36322 Jan 10 08:14 runpilot2-wrapper.sh
[2026-01-10 11:48:37] -rw-r--r--. 1 boincer umatlas       100 Jan 10 10:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 11:48:37] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 10:30 run_atlas
[2026-01-10 11:48:37] -rw-r--r--. 1 boincer umatlas       105 Jan 10 10:30 job.xml
[2026-01-10 11:48:37] -rw-r--r--. 2 boincer umatlas 393996253 Jan 10 10:30 EVNT.47962006._000098.pool.root.1
[2026-01-10 11:48:37] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 10:30 start_atlas.sh
[2026-01-10 11:48:37] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 10:30 shared
[2026-01-10 11:48:37] -rw-r--r--. 2 boincer umatlas    592615 Jan 10 10:30 input.tar.gz
[2026-01-10 11:48:37] -rw-r--r--. 1 boincer umatlas         0 Jan 10 10:30 boinc_lockfile
[2026-01-10 11:48:37] -rw-r--r--. 1 boincer umatlas      2890 Jan 10 10:31 pandaJob.out
[2026-01-10 11:48:37] -rw-------. 1 boincer umatlas        57 Jan 10 10:31 setup.sh.local
[2026-01-10 11:48:37] -rw-------. 1 boincer umatlas    989556 Jan 10 10:32 agis_schedconf.cvmfs.json
[2026-01-10 11:48:37] -rw-------. 1 boincer umatlas   1516240 Jan 10 10:32 agis_ddmendpoints.agis.ALL.json
[2026-01-10 11:48:37] drwx------. 5 boincer umatlas      4096 Jan 10 10:32 pilot3
[2026-01-10 11:48:37] -rw-r--r--. 1 boincer umatlas      6902 Jan 10 11:37 init_data.xml
[2026-01-10 11:48:37] -rw-r--r--. 1 boincer umatlas       529 Jan 10 11:42 boinc_task_state.xml
[2026-01-10 11:48:37] -rw-------. 1 boincer umatlas  40549045 Jan 10 11:47 HITS.47962010._002383.pool.root.1
[2026-01-10 11:48:37] -rw-------. 1 boincer umatlas      1031 Jan 10 11:47 memory_monitor_summary.json
[2026-01-10 11:48:37] -rw-------. 1 boincer umatlas   1184078 Jan 10 11:47 log.47962010._002383.job.log.tgz.1
[2026-01-10 11:48:37] -rw-------. 1 boincer umatlas        95 Jan 10 11:47 pilot_heartbeat.json
[2026-01-10 11:48:37] -rw-------. 1 boincer umatlas      8524 Jan 10 11:47 heartbeat.json
[2026-01-10 11:48:37] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 11:48 boinc_mmap_file
[2026-01-10 11:48:37] -rw-r--r--. 1 boincer umatlas        27 Jan 10 11:48 wrapper_checkpoint.txt
[2026-01-10 11:48:37] -rw-------. 1 boincer umatlas      4824 Jan 10 11:48 pilotlog.txt
[2026-01-10 11:48:37] -rw-------. 1 boincer umatlas    652822 Jan 10 11:48 log.47962010._002383.job.log.1
[2026-01-10 11:48:37] -rw-------. 1 boincer umatlas       353 Jan 10 11:48 output.list
[2026-01-10 11:48:37] -rw-r--r--. 1 boincer umatlas       620 Jan 10 11:48 runtime_log
[2026-01-10 11:48:37] -rw-------. 1 boincer umatlas   1853440 Jan 10 11:48 result.tar.gz
[2026-01-10 11:48:37] -rw-r--r--. 1 boincer umatlas      9342 Jan 10 11:48 runtime_log.err
[2026-01-10 11:48:37] -rw-------. 1 boincer umatlas       653 Jan 10 11:48 4imKDmSyny8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm0YhKDmEmxwom.diag
[2026-01-10 11:48:37] -rw-r--r--. 1 boincer umatlas     22124 Jan 10 11:48 stderr.txt
[2026-01-10 11:48:37] HITS file was successfully produced:
[2026-01-10 11:48:37] -rw-------. 1 boincer umatlas 40549045 Jan 10 11:47 shared/HITS.pool.root.1
[2026-01-10 11:48:37]  *** Contents of shared directory: ***
[2026-01-10 11:48:37] total 426772
[2026-01-10 11:48:37] -rw-r--r--. 2 boincer umatlas 393996253 Jan 10 10:30 ATLAS.root_0
[2026-01-10 11:48:37] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 10:30 start_atlas.sh
[2026-01-10 11:48:37] -rw-r--r--. 2 boincer umatlas    592615 Jan 10 10:30 input.tar.gz
[2026-01-10 11:48:37] -rw-------. 1 boincer umatlas  40549045 Jan 10 11:47 HITS.pool.root.1
[2026-01-10 11:48:37] -rw-------. 1 boincer umatlas   1853440 Jan 10 11:48 result.tar.gz
11:48:39 (3195022): run_atlas exited; CPU time 11071.555857
11:48:39 (3195022): called boinc_finish(0)

</stderr_txt>
]]>

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