Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:41:57 (2810903): wrapper (7.7.26015): starting
09:41:57 (2810903): wrapper: running run_atlas (--nthreads 9)
[2026-01-10 09:41:57] Arguments: --nthreads 9
[2026-01-10 09:41:57] Threads: 9
[2026-01-10 09:41:57] Checking for CVMFS
[2026-01-10 09:41:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 09:41:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 09:41:58] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 09:41:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 09:41:59] 2.13.3.0 7558 94984 359068 154982 3 89 29176875 32935936 6108 16776704 0 298669498 99.474 422057037 38664 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 09:41:59] CVMFS is ok
[2026-01-10 09:41:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 09:41:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 09:41:59] Further information can be found at the LHC@home message board.
[2026-01-10 09:41:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 09:41:59] Checking for apptainer binary...
[2026-01-10 09:41:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 09:41:59] Running /usr/bin/apptainer --version
[2026-01-10 09:41:59] apptainer version 1.4.5-2.el9
[2026-01-10 09:41:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 09:42:00] c6-6-39-2.aglt2.org
[2026-01-10 09:42:00] apptainer works
[2026-01-10 09:42:00] Set ATHENA_PROC_NUMBER=9
[2026-01-10 09:42:00] Set ATHENA_CORE_NUMBER=9
[2026-01-10 09:42:00] Starting ATLAS job with PandaID=6965383300
[2026-01-10 09:42:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 16:16:28]  *** The last 200 lines of the pilot log: ***
[2026-01-10 16:16:28] 2026-01-10 21:15:52,896 | INFO     | time since job start (23553s) is within the limit (349056.0s)
[2026-01-10 16:16:28] 2026-01-10 21:15:52,920 | WARNING  | process 2835788 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 16:16:28] 2026-01-10 21:15:52,921 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6965383300/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 16:16:28] 2026-01-10 21:15:53,183 | INFO     | number of running child processes to parent process 2835788: 1
[2026-01-10 16:16:28] 2026-01-10 21:15:53,183 | INFO     | maximum number of monitored processes: 6
[2026-01-10 16:16:28] 2026-01-10 21:15:54,901 | INFO     | time since job start (23555s) is within the limit (349056.0s)
[2026-01-10 16:16:28] 2026-01-10 21:15:55,234 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-10 16:16:28] 2026-01-10 21:15:55,237 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3057.8443749999997
[2026-01-10 16:16:28] 2026-01-10 21:15:55,246 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6965383300/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 16:16:28] 2026-01-10 21:15:55,247 | INFO     | extracted standard info from prmon json
[2026-01-10 16:16:28] 2026-01-10 21:15:55,247 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 16:16:28] 2026-01-10 21:15:55,247 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 16:16:28] 2026-01-10 21:15:55,247 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 16:16:28] 2026-01-10 21:15:55,247 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 16:16:28] 2026-01-10 21:15:55,253 | INFO     | fitting pss+swap vs Time
[2026-01-10 16:16:28] 2026-01-10 21:15:55,254 | INFO     | sum of square deviations: 17557726094.15625
[2026-01-10 16:16:28] 2026-01-10 21:15:55,257 | INFO     | sum of deviations: 156419402392.73453
[2026-01-10 16:16:28] 2026-01-10 21:15:55,257 | INFO     | mean x: 1768068050.203125
[2026-01-10 16:16:28] 2026-01-10 21:15:55,257 | INFO     | mean y: 2558762.7213541665
[2026-01-10 16:16:28] 2026-01-10 21:15:55,257 | INFO     | intersect: -15748919892.279867
[2026-01-10 16:16:28] 2026-01-10 21:15:55,258 | INFO     | chi2: 3.772386785671455
[2026-01-10 16:16:28] 2026-01-10 21:15:55,258 | INFO     | sum of square deviations: 16880846911.651644
[2026-01-10 16:16:28] 2026-01-10 21:15:55,261 | INFO     | sum of deviations: 179201875621.13992
[2026-01-10 16:16:28] 2026-01-10 21:15:55,262 | INFO     | mean x: 1768067897.7124012
[2026-01-10 16:16:28] 2026-01-10 21:15:55,262 | INFO     | mean y: 2563835.395778364
[2026-01-10 16:16:28] 2026-01-10 21:15:55,262 | INFO     | intersect: -18766700832.059696
[2026-01-10 16:16:28] 2026-01-10 21:15:55,262 | INFO     | chi2: 3.0914322905537666
[2026-01-10 16:16:28] 2026-01-10 21:15:55,262 | INFO     | current chi2=3.0914322905537666 (change=18.05102535360737 %)
[2026-01-10 16:16:28] 2026-01-10 21:15:55,262 | INFO     | right removable region: 378
[2026-01-10 16:16:28] 2026-01-10 21:15:55,263 | INFO     | sum of square deviations: 16880682211.651646
[2026-01-10 16:16:28] 2026-01-10 21:15:55,266 | INFO     | sum of deviations: 48679872599.75981
[2026-01-10 16:16:28] 2026-01-10 21:15:55,266 | INFO     | mean x: 1768068202.7124012
[2026-01-10 16:16:28] 2026-01-10 21:15:55,266 | INFO     | mean y: 2582987.263852243
[2026-01-10 16:16:28] 2026-01-10 21:15:55,266 | INFO     | intersect: -5096105192.312082
[2026-01-10 16:16:28] 2026-01-10 21:15:55,266 | INFO     | chi2: 0.9773100309115634
[2026-01-10 16:16:28] 2026-01-10 21:15:55,266 | INFO     | current chi2=0.9773100309115634 (change=74.09305868041817 %)
[2026-01-10 16:16:28] 2026-01-10 21:15:55,267 | INFO     | sum of square deviations: 16221335924.887669
[2026-01-10 16:16:28] 2026-01-10 21:15:55,270 | INFO     | sum of deviations: 22343226317.978626
[2026-01-10 16:16:28] 2026-01-10 21:15:55,270 | INFO     | mean x: 1768068355.2139037
[2026-01-10 16:16:28] 2026-01-10 21:15:55,270 | INFO     | mean y: 2589067.3502673795
[2026-01-10 16:16:28] 2026-01-10 21:15:55,270 | INFO     | intersect: -2432743730.7080426
[2026-01-10 16:16:28] 2026-01-10 21:15:55,271 | INFO     | chi2: 0.8232264879374782
[2026-01-10 16:16:28] 2026-01-10 21:15:55,271 | INFO     | current chi2=0.8232264879374782 (change=15.76608630839155 %)
[2026-01-10 16:16:28] 2026-01-10 21:15:55,271 | INFO     | left removable region: 20
[2026-01-10 16:16:28] 2026-01-10 21:15:55,271 | INFO     | sum of square deviations: 14227336566.122908
[2026-01-10 16:16:28] 2026-01-10 21:15:55,274 | INFO     | sum of deviations: 38723446477.50275
[2026-01-10 16:16:28] 2026-01-10 21:15:55,274 | INFO     | mean x: 1768068477.2234638
[2026-01-10 16:16:28] 2026-01-10 21:15:55,274 | INFO     | mean y: 2596415.3687150837
[2026-01-10 16:16:28] 2026-01-10 21:15:55,274 | INFO     | intersect: -4809667969.333345
[2026-01-10 16:16:28] 2026-01-10 21:15:55,275 | INFO     | chi2: 0.1096341789696766
[2026-01-10 16:16:28] 2026-01-10 21:15:55,275 | INFO     | current memory leak: 2.72 B/s (using 358 data points, chi2=0.11)
[2026-01-10 16:16:28] 2026-01-10 21:15:55,275 | INFO     | could have reported an average CPU frequency of 2951 MHz (16 samples)
[2026-01-10 16:16:28] 2026-01-10 21:15:55,276 | INFO     | ..............................
[2026-01-10 16:16:28] 2026-01-10 21:15:55,276 | INFO     | . Timing measurements:
[2026-01-10 16:16:28] 2026-01-10 21:15:55,276 | INFO     | . get job = 0 s
[2026-01-10 16:16:28] 2026-01-10 21:15:55,276 | INFO     | . initial setup = 6 s
[2026-01-10 16:16:28] 2026-01-10 21:15:55,276 | INFO     | . payload setup = 48 s
[2026-01-10 16:16:28] 2026-01-10 21:15:55,276 | INFO     | . stage-in = 0 s
[2026-01-10 16:16:28] 2026-01-10 21:15:55,276 | INFO     | . payload execution = 23408 s
[2026-01-10 16:16:28] 2026-01-10 21:15:55,276 | INFO     | . stage-out = 2 s
[2026-01-10 16:16:28] 2026-01-10 21:15:55,276 | INFO     | . log creation = 0 s
[2026-01-10 16:16:28] 2026-01-10 21:15:55,276 | INFO     | ..............................
[2026-01-10 16:16:28] 2026-01-10 21:15:55,360 | INFO     | 
[2026-01-10 16:16:28] 2026-01-10 21:15:55,360 | INFO     | job summary report
[2026-01-10 16:16:28] 2026-01-10 21:15:55,360 | INFO     | --------------------------------------------------
[2026-01-10 16:16:28] 2026-01-10 21:15:55,360 | INFO     | PanDA job id: 6965383300
[2026-01-10 16:16:28] 2026-01-10 21:15:55,360 | INFO     | task id: 47898826
[2026-01-10 16:16:28] 2026-01-10 21:15:55,360 | INFO     | errors: (none)
[2026-01-10 16:16:28] 2026-01-10 21:15:55,360 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 16:16:28] 2026-01-10 21:15:55,360 | INFO     | pilot state: finished 
[2026-01-10 16:16:28] 2026-01-10 21:15:55,360 | INFO     | transexitcode: 0
[2026-01-10 16:16:28] 2026-01-10 21:15:55,360 | INFO     | exeerrorcode: 0
[2026-01-10 16:16:28] 2026-01-10 21:15:55,360 | INFO     | exeerrordiag: 
[2026-01-10 16:16:28] 2026-01-10 21:15:55,360 | INFO     | exitcode: 0
[2026-01-10 16:16:28] 2026-01-10 21:15:55,361 | INFO     | exitmsg: OK
[2026-01-10 16:16:28] 2026-01-10 21:15:55,361 | INFO     | cpuconsumptiontime: 57891 s
[2026-01-10 16:16:28] 2026-01-10 21:15:55,361 | INFO     | nevents: 400
[2026-01-10 16:16:28] 2026-01-10 21:15:55,361 | INFO     | neventsw: 0
[2026-01-10 16:16:28] 2026-01-10 21:15:55,361 | INFO     | pid: 2835788
[2026-01-10 16:16:28] 2026-01-10 21:15:55,361 | INFO     | pgrp: 2835788
[2026-01-10 16:16:28] 2026-01-10 21:15:55,361 | INFO     | corecount: 9
[2026-01-10 16:16:28] 2026-01-10 21:15:55,361 | INFO     | event service: False
[2026-01-10 16:16:28] 2026-01-10 21:15:55,361 | INFO     | sizes: {0: 2283693, 1: 2283948, 2: 2283948, 12: 2283976, 23: 2284004, 34: 2284032, 39: 2284450, 46: 2284478, 23460: 2319128, 23463: 2328182, 23467: 2328320}
[2026-01-10 16:16:28] 2026-01-10 21:15:55,361 | INFO     | --------------------------------------------------
[2026-01-10 16:16:28] 2026-01-10 21:15:55,361 | INFO     | 
[2026-01-10 16:16:28] 2026-01-10 21:15:55,361 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-10 16:16:28] 2026-01-10 21:15:55,380 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 16:16:28] 2026-01-10 21:15:55,380 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 16:16:28] 2026-01-10 21:15:55,380 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 16:16:28] 2026-01-10 21:15:55,380 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 16:16:28] 2026-01-10 21:15:55,380 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 16:16:28] 2026-01-10 21:15:55,380 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 16:16:28] 2026-01-10 21:15:55,381 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 16:16:28] 2026-01-10 21:15:55,381 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 16:16:28] 2026-01-10 21:15:55,381 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 16:16:28] 2026-01-10 21:15:55,381 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 16:16:28] 2026-01-10 21:15:55,381 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 16:16:28] 2026-01-10 21:15:55,381 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 16:16:28] 2026-01-10 21:15:55,381 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 16:16:28] 2026-01-10 21:15:55,381 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 16:16:28] 2026-01-10 21:15:55,381 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 16:16:28] 2026-01-10 21:15:55,381 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 16:16:28] 2026-01-10 21:15:55,381 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 16:16:28] 2026-01-10 21:15:55,381 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 16:16:28] 2026-01-10 21:15:55,381 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 16:16:28] 2026-01-10 21:15:55,381 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 16:16:28] 2026-01-10 21:15:55,382 | INFO     | job 6965383300 has completed (purged errors)
[2026-01-10 16:16:28] 2026-01-10 21:15:55,382 | INFO     | overall cleanup function is called
[2026-01-10 16:16:28] 2026-01-10 21:15:56,272 | INFO     | PID=2817973 has CPU usage=12.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-10 16:16:28] 2026-01-10 21:15:56,273 | INFO     | .. there are 12 such processes running
[2026-01-10 16:16:28] 2026-01-10 21:15:56,387 | INFO     | --- collectZombieJob: --- 10, [2835788]
[2026-01-10 16:16:28] 2026-01-10 21:15:56,388 | INFO     | zombie collector waiting for pid 2835788
[2026-01-10 16:16:28] 2026-01-10 21:15:56,388 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 16:16:28] 2026-01-10 21:15:56,388 | INFO     | collected zombie processes
[2026-01-10 16:16:28] 2026-01-10 21:15:56,388 | INFO     | will attempt to kill all subprocesses of pid=2835788
[2026-01-10 16:16:28] 2026-01-10 21:15:56,623 | INFO     | process IDs to be killed: [2835788] (in reverse order)
[2026-01-10 16:16:28] 2026-01-10 21:15:56,716 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 16:16:28] 2026-01-10 21:15:56,716 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 16:16:28] 2026-01-10 21:15:56,728 | INFO     | did not find any defunct processes belonging to 2835788
[2026-01-10 16:16:28] 2026-01-10 21:15:56,740 | INFO     | did not find any defunct processes belonging to 2835788
[2026-01-10 16:16:28] 2026-01-10 21:15:56,741 | INFO     | ready for new job
[2026-01-10 16:16:28] 2026-01-10 21:15:56,741 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 16:16:28] 2026-01-10 21:15:56,744 | INFO     | ***************************************
[2026-01-10 16:16:28] 2026-01-10 21:15:56,744 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 16:16:28] 2026-01-10 21:15:56,744 | INFO     | ***************************************
[2026-01-10 16:16:28] 2026-01-10 21:15:56,744 | INFO     | 
[2026-01-10 16:16:28] 2026-01-10 21:15:56,747 | INFO     | architecture information:
[2026-01-10 16:16:28] 2026-01-10 21:15:56,747 | INFO     | executing command: cat /etc/os-release
[2026-01-10 16:16:28] 2026-01-10 21:15:56,762 | INFO     | cat /etc/os-release:
[2026-01-10 16:16:28] NAME="CentOS Linux"
[2026-01-10 16:16:28] VERSION="7 (Core)"
[2026-01-10 16:16:28] ID="centos"
[2026-01-10 16:16:28] ID_LIKE="rhel fedora"
[2026-01-10 16:16:28] VERSION_ID="7"
[2026-01-10 16:16:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 16:16:28] ANSI_COLOR="0;31"
[2026-01-10 16:16:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 16:16:28] HOME_URL="https://www.centos.org/"
[2026-01-10 16:16:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 16:16:28] 
[2026-01-10 16:16:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 16:16:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 16:16:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 16:16:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 16:16:28] 
[2026-01-10 16:16:28] 2026-01-10 21:15:56,762 | INFO     | ***************************************
[2026-01-10 16:16:28] 2026-01-10 21:15:57,265 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-10 16:16:28] 2026-01-10 21:15:57,282 | INFO     | sufficient remaining disk space (76478939136 B)
[2026-01-10 16:16:28] 2026-01-10 21:15:57,282 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 16:16:28] 2026-01-10 21:15:57,282 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 16:16:28] 2026-01-10 21:15:57,282 | INFO     | update_server=False
[2026-01-10 16:16:28] 2026-01-10 21:15:57,282 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 16:16:28] 2026-01-10 21:15:57,283 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 16:16:28] 2026-01-10 21:15:57,283 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 16:16:28] 2026-01-10 21:15:57,283 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 16:16:28] 2026-01-10 21:15:57,283 | INFO     | aborting loop
[2026-01-10 16:16:28] 2026-01-10 21:15:57,297 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 16:16:28] 2026-01-10 21:15:57,393 | INFO     | all payload control threads have been joined
[2026-01-10 16:16:28] 2026-01-10 21:15:58,225 | INFO     | all data control threads have been joined
[2026-01-10 16:16:28] 2026-01-10 21:15:58,288 | INFO     | [job] retrieve thread has finished
[2026-01-10 16:16:28] 2026-01-10 21:15:58,288 | INFO     | [job] queue monitor thread has finished
[2026-01-10 16:16:28] 2026-01-10 21:15:58,289 | INFO     | [job] job monitor thread has finished
[2026-01-10 16:16:28] 2026-01-10 21:15:58,294 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 16:16:28] 2026-01-10 21:15:58,296 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 16:16:28] 2026-01-10 21:15:58,356 | INFO     | [data] copytool_in thread has finished
[2026-01-10 16:16:28] 2026-01-10 21:15:58,379 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 16:16:28] 2026-01-10 21:15:58,397 | INFO     | [payload] control thread has finished
[2026-01-10 16:16:28] 2026-01-10 21:15:58,632 | INFO     | all job control threads have been joined
[2026-01-10 16:16:28] 2026-01-10 21:15:59,053 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 16:16:28] 2026-01-10 21:15:59,078 | INFO     | [payload] validate_post thread has finished
[2026-01-10 16:16:28] 2026-01-10 21:15:59,083 | INFO     | [payload] failed_post thread has finished
[2026-01-10 16:16:28] 2026-01-10 21:15:59,230 | INFO     | [data] control thread has finished
[2026-01-10 16:16:28] 2026-01-10 21:15:59,288 | INFO     | [data] copytool_out thread has finished
[2026-01-10 16:16:28] 2026-01-10 21:15:59,351 | INFO     | [job] validate thread has finished
[2026-01-10 16:16:28] 2026-01-10 21:15:59,638 | INFO     | [job] control thread has finished
[2026-01-10 16:16:28] 2026-01-10 21:16:00,358 | INFO     | [monitor] cgroup control has ended
[2026-01-10 16:16:28] 2026-01-10 21:16:01,302 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 16:16:28] 2026-01-10 21:16:01,632 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140390279370560)>', '<ExcThread(monitor, started 140389654718208)>']
[2026-01-10 16:16:28] 2026-01-10 21:16:06,658 | INFO     | all workflow threads have been joined
[2026-01-10 16:16:28] 2026-01-10 21:16:06,658 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 16:16:28] 2026-01-10 21:16:06,658 | INFO     | traces error code: 0
[2026-01-10 16:16:28] 2026-01-10 21:16:06,658 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 16:16:28] 2026-01-10 21:16:28,660 | INFO     | PID=2817973 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 16:16:28] 2026-01-10 21:16:28,660 | INFO     | .. there are 12 such processes running
[2026-01-10 16:16:28] 2026-01-10 21:16:28,660 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 16:16:28] 2026-01-10 21:16:28,660 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 16:16:28] 2026-01-10 21:16:28,660 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 16:16:28] 2026-01-10 21:16:28,660 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 16:16:28] 2026-01-10 21:16:28,661 | CRITICAL | thread 'MainThread' is not alive
[2026-01-10 16:16:28] 2026-01-10 21:16:28,661 | INFO     | [monitor] control thread has ended
[2026-01-10 16:16:28] 2026-01-10 21:16:28,811 [wrapper] ==== pilot stdout END ====
[2026-01-10 16:16:28] 2026-01-10 21:16:28,814 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 16:16:28] 2026-01-10 21:16:28,817 [wrapper] pilotpid: 2817973
[2026-01-10 16:16:28] 2026-01-10 21:16:28,820 [wrapper] Pilot exit status: 0
[2026-01-10 16:16:28] 2026-01-10 21:16:28,831 [wrapper] pandaids: 6965383300
[2026-01-10 16:16:28] 2026-01-10 21:16:28,894 [wrapper] cleanup supervisor_pilot 4034633 2817974
[2026-01-10 16:16:28] 2026-01-10 21:16:28,898 [wrapper] Test setup, not cleaning
[2026-01-10 16:16:28] 2026-01-10 21:16:28,901 [wrapper] apfmon messages muted
[2026-01-10 16:16:28] 2026-01-10 21:16:28,904 [wrapper] ==== wrapper stdout END ====
[2026-01-10 16:16:28] 2026-01-10 21:16:28,907 [wrapper] ==== wrapper stderr END ====
[2026-01-10 16:16:28]  *** Error codes and diagnostics ***
[2026-01-10 16:16:28]     "exeErrorCode": 0,
[2026-01-10 16:16:28]     "exeErrorDiag": "",
[2026-01-10 16:16:28]     "pilotErrorCode": 0,
[2026-01-10 16:16:28]     "pilotErrorDiag": "",
[2026-01-10 16:16:28]  *** Listing of results directory ***
[2026-01-10 16:16:28] total 446548
[2026-01-10 16:16:28] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:09 pilot3.tar.gz
[2026-01-10 16:16:28] -rwx------. 1 boincer umatlas     36322 Jan 10 08:13 runpilot2-wrapper.sh
[2026-01-10 16:16:28] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:13 queuedata.json
[2026-01-10 16:16:28] -rw-r--r--. 1 boincer umatlas       100 Jan 10 09:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 16:16:28] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 09:41 run_atlas
[2026-01-10 16:16:28] -rw-r--r--. 1 boincer umatlas       105 Jan 10 09:41 job.xml
[2026-01-10 16:16:28] -rw-r--r--. 2 boincer umatlas 224757998 Jan 10 09:41 EVNT.47898824._001300.pool.root.1
[2026-01-10 16:16:28] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 09:41 start_atlas.sh
[2026-01-10 16:16:28] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 09:41 shared
[2026-01-10 16:16:28] -rw-r--r--. 2 boincer umatlas    592404 Jan 10 09:41 input.tar.gz
[2026-01-10 16:16:28] -rw-r--r--. 1 boincer umatlas         0 Jan 10 09:41 boinc_lockfile
[2026-01-10 16:16:28] -rw-r--r--. 1 boincer umatlas      2519 Jan 10 09:42 pandaJob.out
[2026-01-10 16:16:28] -rw-------. 1 boincer umatlas        57 Jan 10 09:42 setup.sh.local
[2026-01-10 16:16:28] -rw-------. 1 boincer umatlas    989556 Jan 10 09:43 agis_schedconf.cvmfs.json
[2026-01-10 16:16:28] drwx------. 5 boincer umatlas      4096 Jan 10 09:43 pilot3
[2026-01-10 16:16:28] -rw-r--r--. 1 boincer umatlas      6842 Jan 10 16:11 init_data.xml
[2026-01-10 16:16:28] -rw-------. 1 boincer umatlas 221514991 Jan 10 16:15 HITS.47898826._040440.pool.root.1
[2026-01-10 16:16:28] -rw-r--r--. 1 boincer umatlas       531 Jan 10 16:15 boinc_task_state.xml
[2026-01-10 16:16:28] -rw-------. 1 boincer umatlas        95 Jan 10 16:15 pilot_heartbeat.json
[2026-01-10 16:16:28] -rw-------. 1 boincer umatlas      1039 Jan 10 16:15 memory_monitor_summary.json
[2026-01-10 16:16:28] -rw-------. 1 boincer umatlas   1516240 Jan 10 16:15 agis_ddmendpoints.agis.ALL.json
[2026-01-10 16:16:28] -rw-------. 1 boincer umatlas    591585 Jan 10 16:15 log.47898826._040440.job.log.tgz.1
[2026-01-10 16:16:28] -rw-------. 1 boincer umatlas      7819 Jan 10 16:15 heartbeat.json
[2026-01-10 16:16:28] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 16:16 boinc_mmap_file
[2026-01-10 16:16:28] -rw-r--r--. 1 boincer umatlas        28 Jan 10 16:16 wrapper_checkpoint.txt
[2026-01-10 16:16:28] -rw-------. 1 boincer umatlas       893 Jan 10 16:16 pilotlog.txt
[2026-01-10 16:16:28] -rw-------. 1 boincer umatlas   2948123 Jan 10 16:16 log.47898826._040440.job.log.1
[2026-01-10 16:16:28] -rw-------. 1 boincer umatlas       357 Jan 10 16:16 output.list
[2026-01-10 16:16:28] -rw-r--r--. 1 boincer umatlas       620 Jan 10 16:16 runtime_log
[2026-01-10 16:16:28] -rw-------. 1 boincer umatlas   3563520 Jan 10 16:16 result.tar.gz
[2026-01-10 16:16:28] -rw-r--r--. 1 boincer umatlas      9348 Jan 10 16:16 runtime_log.err
[2026-01-10 16:16:28] -rw-------. 1 boincer umatlas       658 Jan 10 16:16 GVULDmFxny8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmcWhKDmbHDEdn.diag
[2026-01-10 16:16:28] -rw-r--r--. 1 boincer umatlas     21493 Jan 10 16:16 stderr.txt
[2026-01-10 16:16:29] HITS file was successfully produced:
[2026-01-10 16:16:29] -rw-------. 1 boincer umatlas 221514991 Jan 10 16:15 shared/HITS.pool.root.1
[2026-01-10 16:16:29]  *** Contents of shared directory: ***
[2026-01-10 16:16:29] total 439896
[2026-01-10 16:16:29] -rw-r--r--. 2 boincer umatlas 224757998 Jan 10 09:41 ATLAS.root_0
[2026-01-10 16:16:29] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 09:41 start_atlas.sh
[2026-01-10 16:16:29] -rw-r--r--. 2 boincer umatlas    592404 Jan 10 09:41 input.tar.gz
[2026-01-10 16:16:29] -rw-------. 1 boincer umatlas 221514991 Jan 10 16:15 HITS.pool.root.1
[2026-01-10 16:16:29] -rw-------. 1 boincer umatlas   3563520 Jan 10 16:16 result.tar.gz
16:16:31 (2810903): run_atlas exited; CPU time 58534.074854
16:16:31 (2810903): called boinc_finish(0)

</stderr_txt>
]]>

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