Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
10:42:28 (3394764): wrapper (7.7.26015): starting
10:42:28 (3394764): wrapper: running run_atlas (--nthreads 4)
[2026-01-10 10:42:28] Arguments: --nthreads 4
[2026-01-10 10:42:28] Threads: 4
[2026-01-10 10:42:28] Checking for CVMFS
[2026-01-10 10:42:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 10:42:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 10:42:28] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 10:42:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 10:42:28] 2.13.3.0 180034 4324 58036 154984 3 227 3055346 4096001 4347 130560 0 20711445 99.986 361345 2616 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-10 10:42:28] CVMFS is ok
[2026-01-10 10:42:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 10:42:28] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-10 10:42:28] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-10 10:42:28] Further information can be found at the LHC@home message board.
[2026-01-10 10:42:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 10:42:28] Checking for apptainer binary...
[2026-01-10 10:42:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 10:42:28] Running /usr/bin/apptainer --version
[2026-01-10 10:42:28] apptainer version 1.4.1
[2026-01-10 10:42:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 10:42:28] linux-7950X
[2026-01-10 10:42:28] apptainer works
[2026-01-10 10:42:28] Set ATHENA_PROC_NUMBER=4
[2026-01-10 10:42:28] Set ATHENA_CORE_NUMBER=4
[2026-01-10 10:42:28] Starting ATLAS job with PandaID=6965391066
[2026-01-10 10:42:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 12:45:03]  *** The last 200 lines of the pilot log: ***
[2026-01-10 12:45:03] 2026-01-10 17:44:28,556 | INFO     | total number of processed events: 400 (read)
[2026-01-10 12:45:03] 2026-01-10 17:44:28,556 | INFO     | executing command: lscpu
[2026-01-10 12:45:03] 2026-01-10 17:44:28,578 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 12:45:03] 2026-01-10 17:44:30,519 | INFO     | time since job start (7315s) is within the limit (349056.0s)
[2026-01-10 12:45:03] 2026-01-10 17:44:30,527 | INFO     | monitor loop #552: job 0:6965391066 is in state 'finished'
[2026-01-10 12:45:03] 2026-01-10 17:44:30,527 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:45:03] 2026-01-10 17:44:30,817 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-10 12:45:03] 2026-01-10 17:44:30,820 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4251.371562500001
[2026-01-10 12:45:03] 2026-01-10 17:44:30,823 | INFO     | using path: /var/lib/boinc-client/slots/5/PanDA_Pilot-6965391066/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 12:45:03] 2026-01-10 17:44:30,824 | INFO     | extracted standard info from prmon json
[2026-01-10 12:45:03] 2026-01-10 17:44:30,824 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 12:45:03] 2026-01-10 17:44:30,824 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 12:45:03] 2026-01-10 17:44:30,824 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 12:45:03] 2026-01-10 17:44:30,824 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 12:45:03] 2026-01-10 17:44:30,825 | INFO     | fitting pss+swap vs Time
[2026-01-10 12:45:03] 2026-01-10 17:44:30,825 | INFO     | sum of square deviations: 535786790.0
[2026-01-10 12:45:03] 2026-01-10 17:44:30,826 | INFO     | sum of deviations: 6452309678.5
[2026-01-10 12:45:03] 2026-01-10 17:44:30,826 | INFO     | mean x: 1768063403.5
[2026-01-10 12:45:03] 2026-01-10 17:44:30,826 | INFO     | mean y: 2338930.441666667
[2026-01-10 12:45:03] 2026-01-10 17:44:30,826 | INFO     | intersect: -21289885557.968548
[2026-01-10 12:45:03] 2026-01-10 17:44:30,826 | INFO     | chi2: 1.0940467120203285
[2026-01-10 12:45:03] 2026-01-10 17:44:30,826 | INFO     | sum of square deviations: 471562330.0
[2026-01-10 12:45:03] 2026-01-10 17:44:30,826 | INFO     | sum of deviations: 6207874046.999996
[2026-01-10 12:45:03] 2026-01-10 17:44:30,826 | INFO     | mean x: 1768063251.0
[2026-01-10 12:45:03] 2026-01-10 17:44:30,826 | INFO     | mean y: 2338349.7130434783
[2026-01-10 12:45:03] 2026-01-10 17:44:30,827 | INFO     | intersect: -23273299399.67491
[2026-01-10 12:45:03] 2026-01-10 17:44:30,827 | INFO     | chi2: 1.0955413189971106
[2026-01-10 12:45:03] 2026-01-10 17:44:30,827 | INFO     | current chi2=1.0955413189971106 (change=-0.13661272049545561 %)
[2026-01-10 12:45:03] 2026-01-10 17:44:30,827 | INFO     | right removable region: 114
[2026-01-10 12:45:03] 2026-01-10 17:44:30,827 | INFO     | sum of square deviations: 471562330.0
[2026-01-10 12:45:03] 2026-01-10 17:44:30,827 | INFO     | sum of deviations: -3713171687.0000005
[2026-01-10 12:45:03] 2026-01-10 17:44:30,827 | INFO     | mean x: 1768063556.0
[2026-01-10 12:45:03] 2026-01-10 17:44:30,827 | INFO     | mean y: 2362314.6260869564
[2026-01-10 12:45:03] 2026-01-10 17:44:30,827 | INFO     | intersect: 13924431825.470476
[2026-01-10 12:45:03] 2026-01-10 17:44:30,827 | INFO     | chi2: 0.009708947861624028
[2026-01-10 12:45:03] 2026-01-10 17:44:30,827 | INFO     | current chi2=0.009708947861624028 (change=99.11256550977654 %)
[2026-01-10 12:45:03] 2026-01-10 17:44:30,827 | INFO     | sum of square deviations: 412686807.5
[2026-01-10 12:45:03] 2026-01-10 17:44:30,828 | INFO     | sum of deviations: -3068357523.0
[2026-01-10 12:45:03] 2026-01-10 17:44:30,828 | INFO     | mean x: 1768063708.5
[2026-01-10 12:45:03] 2026-01-10 17:44:30,828 | INFO     | mean y: 2360635.6
[2026-01-10 12:45:03] 2026-01-10 17:44:30,828 | INFO     | intersect: 13148047588.82119
[2026-01-10 12:45:03] 2026-01-10 17:44:30,828 | INFO     | chi2: 0.009526426695576976
[2026-01-10 12:45:03] 2026-01-10 17:44:30,828 | INFO     | current chi2=0.009526426695576976 (change=1.8799273479312106 %)
[2026-01-10 12:45:03] 2026-01-10 17:44:30,828 | INFO     | left removable region: 20
[2026-01-10 12:45:03] 2026-01-10 17:44:30,828 | INFO     | sum of square deviations: 257521107.5
[2026-01-10 12:45:03] 2026-01-10 17:44:30,828 | INFO     | sum of deviations: -1285016026.5
[2026-01-10 12:45:03] 2026-01-10 17:44:30,828 | INFO     | mean x: 1768063830.5
[2026-01-10 12:45:03] 2026-01-10 17:44:30,828 | INFO     | mean y: 2355684.5425531915
[2026-01-10 12:45:03] 2026-01-10 17:44:30,828 | INFO     | intersect: 8824896019.677916
[2026-01-10 12:45:03] 2026-01-10 17:44:30,829 | INFO     | chi2: 0.0072754150202492705
[2026-01-10 12:45:03] 2026-01-10 17:44:30,829 | INFO     | current memory leak: -4.99 B/s (using 94 data points, chi2=0.01)
[2026-01-10 12:45:03] 2026-01-10 17:44:30,829 | INFO     | could have reported an average CPU frequency of 4290 MHz (8 samples)
[2026-01-10 12:45:03] 2026-01-10 17:44:30,829 | INFO     | ..............................
[2026-01-10 12:45:03] 2026-01-10 17:44:30,829 | INFO     | . Timing measurements:
[2026-01-10 12:45:03] 2026-01-10 17:44:30,829 | INFO     | . get job = 0 s
[2026-01-10 12:45:03] 2026-01-10 17:44:30,829 | INFO     | . initial setup = 2 s
[2026-01-10 12:45:03] 2026-01-10 17:44:30,829 | INFO     | . payload setup = 2 s
[2026-01-10 12:45:03] 2026-01-10 17:44:30,829 | INFO     | . stage-in = 0 s
[2026-01-10 12:45:03] 2026-01-10 17:44:30,829 | INFO     | . payload execution = 7289 s
[2026-01-10 12:45:03] 2026-01-10 17:44:30,829 | INFO     | . stage-out = 0 s
[2026-01-10 12:45:03] 2026-01-10 17:44:30,829 | INFO     | . log creation = 0 s
[2026-01-10 12:45:03] 2026-01-10 17:44:30,829 | INFO     | ..............................
[2026-01-10 12:45:03] 2026-01-10 17:44:30,955 | INFO     | 
[2026-01-10 12:45:03] 2026-01-10 17:44:30,955 | INFO     | job summary report
[2026-01-10 12:45:03] 2026-01-10 17:44:30,955 | INFO     | --------------------------------------------------
[2026-01-10 12:45:03] 2026-01-10 17:44:30,955 | INFO     | PanDA job id: 6965391066
[2026-01-10 12:45:03] 2026-01-10 17:44:30,955 | INFO     | task id: 48039250
[2026-01-10 12:45:03] 2026-01-10 17:44:30,955 | INFO     | errors: (none)
[2026-01-10 12:45:03] 2026-01-10 17:44:30,955 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 12:45:03] 2026-01-10 17:44:30,955 | INFO     | pilot state: finished 
[2026-01-10 12:45:03] 2026-01-10 17:44:30,955 | INFO     | transexitcode: 0
[2026-01-10 12:45:03] 2026-01-10 17:44:30,955 | INFO     | exeerrorcode: 0
[2026-01-10 12:45:03] 2026-01-10 17:44:30,955 | INFO     | exeerrordiag: 
[2026-01-10 12:45:03] 2026-01-10 17:44:30,955 | INFO     | exitcode: 0
[2026-01-10 12:45:03] 2026-01-10 17:44:30,955 | INFO     | exitmsg: OK
[2026-01-10 12:45:03] 2026-01-10 17:44:30,955 | INFO     | cpuconsumptiontime: 27707 s
[2026-01-10 12:45:03] 2026-01-10 17:44:30,955 | INFO     | nevents: 400
[2026-01-10 12:45:03] 2026-01-10 17:44:30,955 | INFO     | neventsw: 0
[2026-01-10 12:45:03] 2026-01-10 17:44:30,956 | INFO     | pid: 3407405
[2026-01-10 12:45:03] 2026-01-10 17:44:30,956 | INFO     | pgrp: 3407405
[2026-01-10 12:45:03] 2026-01-10 17:44:30,956 | INFO     | corecount: 4
[2026-01-10 12:45:03] 2026-01-10 17:44:30,956 | INFO     | event service: False
[2026-01-10 12:45:03] 2026-01-10 17:44:30,956 | INFO     | sizes: {0: 2284032, 2: 2284294, 10: 2284322, 7295: 2311823, 7296: 2320835, 7298: 2320891, 7302: 2321213}
[2026-01-10 12:45:03] 2026-01-10 17:44:30,956 | INFO     | --------------------------------------------------
[2026-01-10 12:45:03] 2026-01-10 17:44:30,956 | INFO     | 
[2026-01-10 12:45:03] 2026-01-10 17:44:30,956 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/5
[2026-01-10 12:45:03] 2026-01-10 17:44:30,970 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 12:45:03] 2026-01-10 17:44:30,970 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 12:45:03] 2026-01-10 17:44:30,971 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 12:45:03] 2026-01-10 17:44:30,971 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 12:45:03] 2026-01-10 17:44:30,971 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 12:45:03] 2026-01-10 17:44:30,971 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 12:45:03] 2026-01-10 17:44:30,971 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 12:45:03] 2026-01-10 17:44:30,971 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 12:45:03] 2026-01-10 17:44:30,971 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 12:45:03] 2026-01-10 17:44:30,971 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 12:45:03] 2026-01-10 17:44:30,971 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 12:45:03] 2026-01-10 17:44:30,971 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 12:45:03] 2026-01-10 17:44:30,971 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 12:45:03] 2026-01-10 17:44:30,971 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 12:45:03] 2026-01-10 17:44:30,971 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 12:45:03] 2026-01-10 17:44:30,971 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 12:45:03] 2026-01-10 17:44:30,971 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 12:45:03] 2026-01-10 17:44:30,971 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 12:45:03] 2026-01-10 17:44:30,971 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 12:45:03] 2026-01-10 17:44:30,971 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 12:45:03] 2026-01-10 17:44:30,971 | INFO     | job 6965391066 has completed (purged errors)
[2026-01-10 12:45:03] 2026-01-10 17:44:30,971 | INFO     | overall cleanup function is called
[2026-01-10 12:45:03] 2026-01-10 17:44:31,977 | INFO     | --- collectZombieJob: --- 10, [3407405]
[2026-01-10 12:45:03] 2026-01-10 17:44:31,978 | INFO     | zombie collector waiting for pid 3407405
[2026-01-10 12:45:03] 2026-01-10 17:44:31,978 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 12:45:03] 2026-01-10 17:44:31,978 | INFO     | collected zombie processes
[2026-01-10 12:45:03] 2026-01-10 17:44:31,978 | INFO     | will attempt to kill all subprocesses of pid=3407405
[2026-01-10 12:45:03] 2026-01-10 17:44:32,081 | INFO     | process IDs to be killed: [3407405] (in reverse order)
[2026-01-10 12:45:03] 2026-01-10 17:44:32,124 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 12:45:03] 2026-01-10 17:44:32,125 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 12:45:03] 2026-01-10 17:44:32,128 | INFO     | did not find any defunct processes belonging to 3407405
[2026-01-10 12:45:03] 2026-01-10 17:44:32,131 | INFO     | did not find any defunct processes belonging to 3407405
[2026-01-10 12:45:03] 2026-01-10 17:44:32,131 | INFO     | ready for new job
[2026-01-10 12:45:03] 2026-01-10 17:44:32,131 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 12:45:03] 2026-01-10 17:44:32,132 | INFO     | ***************************************
[2026-01-10 12:45:03] 2026-01-10 17:44:32,132 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 12:45:03] 2026-01-10 17:44:32,132 | INFO     | ***************************************
[2026-01-10 12:45:03] 2026-01-10 17:44:32,132 | INFO     | 
[2026-01-10 12:45:03] 2026-01-10 17:44:32,133 | INFO     | architecture information:
[2026-01-10 12:45:03] 2026-01-10 17:44:32,133 | INFO     | executing command: cat /etc/os-release
[2026-01-10 12:45:03] 2026-01-10 17:44:32,144 | INFO     | cat /etc/os-release:
[2026-01-10 12:45:03] NAME="CentOS Linux"
[2026-01-10 12:45:03] VERSION="7 (Core)"
[2026-01-10 12:45:03] ID="centos"
[2026-01-10 12:45:03] ID_LIKE="rhel fedora"
[2026-01-10 12:45:03] VERSION_ID="7"
[2026-01-10 12:45:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 12:45:03] ANSI_COLOR="0;31"
[2026-01-10 12:45:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 12:45:03] HOME_URL="https://www.centos.org/"
[2026-01-10 12:45:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 12:45:03] 
[2026-01-10 12:45:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 12:45:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 12:45:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 12:45:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 12:45:03] 
[2026-01-10 12:45:03] 2026-01-10 17:44:32,144 | INFO     | ***************************************
[2026-01-10 12:45:03] 2026-01-10 17:44:32,646 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/5
[2026-01-10 12:45:03] 2026-01-10 17:44:32,657 | INFO     | sufficient remaining disk space (879534014464 B)
[2026-01-10 12:45:03] 2026-01-10 17:44:32,658 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 12:45:03] 2026-01-10 17:44:32,658 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 12:45:03] 2026-01-10 17:44:32,658 | INFO     | update_server=False
[2026-01-10 12:45:03] 2026-01-10 17:44:32,658 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 12:45:03] 2026-01-10 17:44:32,658 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 12:45:03] 2026-01-10 17:44:32,658 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 12:45:03] 2026-01-10 17:44:32,658 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:45:03] 2026-01-10 17:44:32,760 | INFO     | all data control threads have been joined
[2026-01-10 12:45:03] 2026-01-10 17:44:32,810 | INFO     | all payload control threads have been joined
[2026-01-10 12:45:03] 2026-01-10 17:44:33,030 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 12:45:03] 2026-01-10 17:44:33,030 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 12:45:03] 2026-01-10 17:44:33,030 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:45:03] 2026-01-10 17:44:33,030 | INFO     | will abort loop
[2026-01-10 12:45:03] 2026-01-10 17:44:33,663 | INFO     | [job] retrieve thread has finished
[2026-01-10 12:45:03] 2026-01-10 17:44:33,664 | INFO     | [job] queue monitor thread has finished
[2026-01-10 12:45:03] 2026-01-10 17:44:33,764 | INFO     | [data] control thread has finished
[2026-01-10 12:45:03] 2026-01-10 17:44:33,816 | INFO     | [payload] control thread has finished
[2026-01-10 12:45:03] 2026-01-10 17:44:33,830 | INFO     | all job control threads have been joined
[2026-01-10 12:45:03] 2026-01-10 17:44:33,888 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 12:45:03] 2026-01-10 17:44:34,036 | INFO     | [job] job monitor thread has finished
[2026-01-10 12:45:03] 2026-01-10 17:44:34,045 | INFO     | [payload] validate_post thread has finished
[2026-01-10 12:45:03] 2026-01-10 17:44:34,351 | INFO     | [payload] failed_post thread has finished
[2026-01-10 12:45:03] 2026-01-10 17:44:34,614 | INFO     | [data] copytool_in thread has finished
[2026-01-10 12:45:03] 2026-01-10 17:44:34,663 | INFO     | [data] copytool_out thread has finished
[2026-01-10 12:45:03] 2026-01-10 17:44:34,835 | INFO     | [job] control thread has finished
[2026-01-10 12:45:03] 2026-01-10 17:44:34,863 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 12:45:03] 2026-01-10 17:44:34,895 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 12:45:03] 2026-01-10 17:44:34,987 | INFO     | [job] validate thread has finished
[2026-01-10 12:45:03] 2026-01-10 17:44:36,660 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 12:45:03] 2026-01-10 17:44:43,541 | INFO     | job.realtimelogging is not enabled
[2026-01-10 12:45:03] 2026-01-10 17:44:44,546 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 12:45:03] 2026-01-10 17:44:46,710 | INFO     | [monitor] cgroup control has ended
[2026-01-10 12:45:03] 2026-01-10 17:44:47,382 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140290139105088)>', '<ExcThread(monitor, started 140289645725440)>']
[2026-01-10 12:45:03] 2026-01-10 17:44:52,398 | INFO     | all workflow threads have been joined
[2026-01-10 12:45:03] 2026-01-10 17:44:52,398 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 12:45:03] 2026-01-10 17:44:52,398 | INFO     | traces error code: 0
[2026-01-10 12:45:03] 2026-01-10 17:44:52,398 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 12:45:03] 2026-01-10 17:45:03,695 | INFO     | PID=3400729 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 12:45:03] 2026-01-10 17:45:03,696 | INFO     | .. there are 8 such processes running
[2026-01-10 12:45:03] 2026-01-10 17:45:03,697 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 12:45:03] 2026-01-10 17:45:03,698 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 12:45:03] 2026-01-10 17:45:03,698 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 12:45:03] 2026-01-10 17:45:03,698 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 12:45:03] 2026-01-10 17:45:03,698 | INFO     | [monitor] control thread has ended
[2026-01-10 12:45:03] 2026-01-10 17:45:03,764 [wrapper] ==== pilot stdout END ====
[2026-01-10 12:45:03] 2026-01-10 17:45:03,766 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 12:45:03] 2026-01-10 17:45:03,767 [wrapper] pilotpid: 3400729
[2026-01-10 12:45:03] 2026-01-10 17:45:03,769 [wrapper] Pilot exit status: 0
[2026-01-10 12:45:03] 2026-01-10 17:45:03,775 [wrapper] pandaids: 6965391066
[2026-01-10 12:45:03] 2026-01-10 17:45:03,802 [wrapper] cleanup supervisor_pilot 3604178 3400730
[2026-01-10 12:45:03] 2026-01-10 17:45:03,803 [wrapper] Test setup, not cleaning
[2026-01-10 12:45:03] 2026-01-10 17:45:03,805 [wrapper] apfmon messages muted
[2026-01-10 12:45:03] 2026-01-10 17:45:03,806 [wrapper] ==== wrapper stdout END ====
[2026-01-10 12:45:03] 2026-01-10 17:45:03,807 [wrapper] ==== wrapper stderr END ====
[2026-01-10 12:45:03]  *** Error codes and diagnostics ***
[2026-01-10 12:45:03]     "exeErrorCode": 0,
[2026-01-10 12:45:03]     "exeErrorDiag": "",
[2026-01-10 12:45:03]     "pilotErrorCode": 0,
[2026-01-10 12:45:03]     "pilotErrorDiag": "",
[2026-01-10 12:45:03]  *** Listing of results directory ***
[2026-01-10 12:45:03] total 1154408
[2026-01-10 12:45:03] -rw-r--r-- 1 boinc boinc      5112 Jan 10 08:29 queuedata.json
[2026-01-10 12:45:03] -rw-r--r-- 1 boinc boinc    579449 Jan 10 08:29 pilot3.tar.gz
[2026-01-10 12:45:03] -rwx------ 1 boinc boinc     36322 Jan 10 08:30 runpilot2-wrapper.sh
[2026-01-10 12:45:03] -rw-r--r-- 1 boinc boinc       100 Jan 10 10:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 12:45:03] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 10:42 run_atlas
[2026-01-10 12:45:03] -rw-r--r-- 1 boinc boinc       105 Jan 10 10:42 job.xml
[2026-01-10 12:45:03] -rw-r--r-- 2 boinc boinc    592418 Jan 10 10:42 input.tar.gz
[2026-01-10 12:45:03] -rw-r--r-- 1 boinc boinc      9845 Jan 10 10:42 init_data.xml
[2026-01-10 12:45:03] -rw-r--r-- 2 boinc boinc 922705161 Jan 10 10:42 EVNT.48039248._000018.pool.root.1
[2026-01-10 12:45:03] -rw-r--r-- 2 boinc boinc     15847 Jan 10 10:42 start_atlas.sh
[2026-01-10 12:45:03] drwxrwx--x 2 boinc boinc      4096 Jan 10 10:42 shared
[2026-01-10 12:45:03] -rw-r--r-- 1 boinc boinc         0 Jan 10 10:42 boinc_lockfile
[2026-01-10 12:45:03] -rw-r--r-- 1 boinc boinc      2591 Jan 10 10:42 pandaJob.out
[2026-01-10 12:45:03] -rw------- 1 boinc boinc    989556 Jan 10 10:42 agis_schedconf.cvmfs.json
[2026-01-10 12:45:03] -rw------- 1 boinc boinc   1516240 Jan 10 10:42 agis_ddmendpoints.agis.ALL.json
[2026-01-10 12:45:03] drwx------ 5 boinc boinc      4096 Jan 10 10:42 pilot3
[2026-01-10 12:45:03] -rw------- 1 boinc boinc 252689328 Jan 10 12:43 HITS.48039250._006870.pool.root.1
[2026-01-10 12:45:03] -rw-r--r-- 1 boinc boinc       530 Jan 10 12:44 boinc_task_state.xml
[2026-01-10 12:45:03] -rw------- 1 boinc boinc      1023 Jan 10 12:44 memory_monitor_summary.json
[2026-01-10 12:45:03] -rw------- 1 boinc boinc    323921 Jan 10 12:44 log.48039250._006870.job.log.tgz.1
[2026-01-10 12:45:03] -rw------- 1 boinc boinc      7738 Jan 10 12:44 heartbeat.json
[2026-01-10 12:45:03] -rw-r--r-- 1 boinc boinc      8192 Jan 10 12:45 boinc_mmap_file
[2026-01-10 12:45:03] -rw-r--r-- 1 boinc boinc        27 Jan 10 12:45 wrapper_checkpoint.txt
[2026-01-10 12:45:03] -rw------- 1 boinc boinc       822 Jan 10 12:45 pilotlog.txt
[2026-01-10 12:45:03] -rw------- 1 boinc boinc        95 Jan 10 12:45 pilot_heartbeat.json
[2026-01-10 12:45:03] -rw------- 1 boinc boinc   1076798 Jan 10 12:45 log.48039250._006870.job.log.1
[2026-01-10 12:45:03] -rw------- 1 boinc boinc       357 Jan 10 12:45 output.list
[2026-01-10 12:45:03] -rw-r--r-- 1 boinc boinc       620 Jan 10 12:45 runtime_log
[2026-01-10 12:45:03] -rw------- 1 boinc boinc   1423360 Jan 10 12:45 result.tar.gz
[2026-01-10 12:45:03] -rw-r--r-- 1 boinc boinc      8897 Jan 10 12:45 runtime_log.err
[2026-01-10 12:45:03] -rw------- 1 boinc boinc       644 Jan 10 12:45 GPILDmLEoy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgumKDmARQJHm.diag
[2026-01-10 12:45:03] -rw-r--r-- 1 boinc boinc     21374 Jan 10 12:45 stderr.txt
[2026-01-10 12:45:03] HITS file was successfully produced:
[2026-01-10 12:45:03] -rw------- 1 boinc boinc 252689328 Jan 10 12:43 shared/HITS.pool.root.1
[2026-01-10 12:45:03]  *** Contents of shared directory: ***
[2026-01-10 12:45:03] total 1149844
[2026-01-10 12:45:03] -rw-r--r-- 2 boinc boinc    592418 Jan 10 10:42 input.tar.gz
[2026-01-10 12:45:03] -rw-r--r-- 2 boinc boinc 922705161 Jan 10 10:42 ATLAS.root_0
[2026-01-10 12:45:03] -rw-r--r-- 2 boinc boinc     15847 Jan 10 10:42 start_atlas.sh
[2026-01-10 12:45:03] -rw------- 1 boinc boinc 252689328 Jan 10 12:43 HITS.pool.root.1
[2026-01-10 12:45:03] -rw------- 1 boinc boinc   1423360 Jan 10 12:45 result.tar.gz
12:45:05 (3394764): run_atlas exited; CPU time 27760.614369
12:45:05 (3394764): called boinc_finish(0)

</stderr_txt>
]]>

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