Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:20:06 (2252342): wrapper (7.7.26015): starting
08:20:06 (2252342): wrapper: running run_atlas (--nthreads 12)
[2026-01-11 08:20:06] Arguments: --nthreads 12
[2026-01-11 08:20:06] Threads: 12
[2026-01-11 08:20:06] Checking for CVMFS
[2026-01-11 08:20:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 08:20:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 08:20:07] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 08:20:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 08:20:07] 2.13.3.0 4294 5156 117132 155009 0 59 39169075 46080001 922 130560 0 11044073 99.996 192653 923 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2026-01-11 08:20:07] CVMFS is ok
[2026-01-11 08:20:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 08:20:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 08:20:07] Further information can be found at the LHC@home message board.
[2026-01-11 08:20:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 08:20:07] Checking for apptainer binary...
[2026-01-11 08:20:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 08:20:07] Running /usr/bin/apptainer --version
[2026-01-11 08:20:07] apptainer version 1.4.5-2.el9
[2026-01-11 08:20:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 08:20:07] gpu01.farm.particle.cz
[2026-01-11 08:20:07] apptainer works
[2026-01-11 08:20:07] Set ATHENA_PROC_NUMBER=12
[2026-01-11 08:20:07] Set ATHENA_CORE_NUMBER=12
[2026-01-11 08:20:07] Starting ATLAS job with PandaID=6965390343
[2026-01-11 08:20:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 09:15:24]  *** The last 200 lines of the pilot log: ***
[2026-01-11 09:15:24]  protocol_id=None
[2026-01-11 09:15:24]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-11 09:15:24]  replicas=None
[2026-01-11 09:15:24]  scope=mc23_13p6TeV
[2026-01-11 09:15:24]  status=None
[2026-01-11 09:15:24]  status_code=0
[2026-01-11 09:15:24]  storage_token=
[2026-01-11 09:15:24]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6965390343/log.48039250._006753.job.log.tgz.1
[2026-01-11 09:15:24]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f8/7d/log.48039250._006753.job.log.tgz.1
[2026-01-11 09:15:24]  workdir=None
[2026-01-11 09:15:24] ]
[2026-01-11 09:15:24] 2026-01-11 08:14:15,426 | INFO     | transferring file log.48039250._006753.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6965390343/log.48039250._006753.job.log.tgz.1 to /var/lib/boinc/slots/
[2026-01-11 09:15:24] 2026-01-11 08:14:15,426 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6965390343/log.48039250._006753.job.log.tgz.1 /var/lib/boinc/slots/1/log.48039250._006753.job
[2026-01-11 09:15:24] 2026-01-11 08:14:15,439 | INFO     | adding to output.list: log.48039250._006753.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f8/7d/log.48039250._006753.job.log.tg
[2026-01-11 09:15:24] 2026-01-11 08:14:15,440 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-11 09:15:24] 2026-01-11 08:14:15,440 | INFO     | summary of transferred files:
[2026-01-11 09:15:24] 2026-01-11 08:14:15,440 | INFO     |  -- lfn=log.48039250._006753.job.log.tgz.1, status_code=0, status=transferred
[2026-01-11 09:15:24] 2026-01-11 08:14:15,440 | INFO     | stage-out finished correctly
[2026-01-11 09:15:24] 2026-01-11 08:14:15,491 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-11 09:15:24] 2026-01-11 08:14:17,137 | INFO     | monitor loop #249: job 0:6965390343 is in state 'finished'
[2026-01-11 09:15:24] 2026-01-11 08:14:17,137 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 09:15:24] 2026-01-11 08:14:17,281 | INFO     | time since job start (3243s) is within the limit (349056.0s)
[2026-01-11 09:15:24] 2026-01-11 08:14:17,739 | INFO     | job 6965390343 has state=finished
[2026-01-11 09:15:24] 2026-01-11 08:14:17,740 | INFO     | preparing for final server update for job 6965390343 in state='finished'
[2026-01-11 09:15:24] 2026-01-11 08:14:18,292 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-11 09:15:24] 2026-01-11 08:14:18,292 | INFO     | this job has now completed (state=finished)
[2026-01-11 09:15:24] 2026-01-11 08:14:18,292 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-11 09:15:24] 2026-01-11 08:14:18,293 | INFO     | log transfer has been attempted: DONE
[2026-01-11 09:15:24] 2026-01-11 08:14:18,293 | INFO     | job 6965390343 has finished - writing final server update
[2026-01-11 09:15:24] 2026-01-11 08:14:18,293 | INFO     | total number of processed events: 400 (read)
[2026-01-11 09:15:24] 2026-01-11 08:14:18,294 | INFO     | executing command: lscpu
[2026-01-11 09:15:24] 2026-01-11 08:14:18,320 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 09:15:24] 2026-01-11 08:14:18,409 | INFO     | PID=2256202 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 09:15:24] 2026-01-11 08:14:18,409 | INFO     | .. there are 2 such processes running
[2026-01-11 09:15:24] 2026-01-11 08:14:19,409 | INFO     | time since job start (3245s) is within the limit (349056.0s)
[2026-01-11 09:15:24] 2026-01-11 08:14:19,640 | INFO     | monitor loop #250: job 0:6965390343 is in state 'finished'
[2026-01-11 09:15:24] 2026-01-11 08:14:19,640 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 09:15:24] 2026-01-11 08:14:20,959 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-11 09:15:24] 2026-01-11 08:14:20,962 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3236.34228125
[2026-01-11 09:15:24] 2026-01-11 08:14:20,966 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6965390343/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 09:15:24] 2026-01-11 08:14:20,966 | INFO     | extracted standard info from prmon json
[2026-01-11 09:15:24] 2026-01-11 08:14:20,966 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 09:15:24] 2026-01-11 08:14:20,966 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 09:15:24] 2026-01-11 08:14:20,966 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 09:15:24] 2026-01-11 08:14:20,966 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 09:15:24] 2026-01-11 08:14:20,967 | INFO     | fitting pss+swap vs Time
[2026-01-11 09:15:24] 2026-01-11 08:14:20,967 | INFO     | sum of square deviations: 30168007.5
[2026-01-11 09:15:24] 2026-01-11 08:14:20,967 | INFO     | sum of deviations: -2257816637.5
[2026-01-11 09:15:24] 2026-01-11 08:14:20,967 | INFO     | mean x: 1768117713.5
[2026-01-11 09:15:24] 2026-01-11 08:14:20,967 | INFO     | mean y: 3038480.152173913
[2026-01-11 09:15:24] 2026-01-11 08:14:20,968 | INFO     | intersect: 132331485779.78766
[2026-01-11 09:15:24] 2026-01-11 08:14:20,968 | INFO     | chi2: 0.01599648068425056
[2026-01-11 09:15:24] 2026-01-11 08:14:20,968 | INFO     | current memory leak: -74.84 B/s (using 46 data points, chi2=0.02)
[2026-01-11 09:15:24] 2026-01-11 08:14:20,968 | INFO     | could have reported an average CPU frequency of 3228 MHz (5 samples)
[2026-01-11 09:15:24] 2026-01-11 08:14:20,968 | INFO     | ..............................
[2026-01-11 09:15:24] 2026-01-11 08:14:20,968 | INFO     | . Timing measurements:
[2026-01-11 09:15:24] 2026-01-11 08:14:20,968 | INFO     | . get job = 0 s
[2026-01-11 09:15:24] 2026-01-11 08:14:20,968 | INFO     | . initial setup = 2 s
[2026-01-11 09:15:24] 2026-01-11 08:14:20,968 | INFO     | . payload setup = 3 s
[2026-01-11 09:15:24] 2026-01-11 08:14:20,968 | INFO     | . stage-in = 0 s
[2026-01-11 09:15:24] 2026-01-11 08:14:20,968 | INFO     | . payload execution = 3219 s
[2026-01-11 09:15:24] 2026-01-11 08:14:20,968 | INFO     | . stage-out = 0 s
[2026-01-11 09:15:24] 2026-01-11 08:14:20,968 | INFO     | . log creation = 0 s
[2026-01-11 09:15:24] 2026-01-11 08:14:20,968 | INFO     | ..............................
[2026-01-11 09:15:24] 2026-01-11 08:14:21,019 | INFO     | 
[2026-01-11 09:15:24] 2026-01-11 08:14:21,020 | INFO     | job summary report
[2026-01-11 09:15:24] 2026-01-11 08:14:21,020 | INFO     | --------------------------------------------------
[2026-01-11 09:15:24] 2026-01-11 08:14:21,020 | INFO     | PanDA job id: 6965390343
[2026-01-11 09:15:24] 2026-01-11 08:14:21,020 | INFO     | task id: 48039250
[2026-01-11 09:15:24] 2026-01-11 08:14:21,020 | INFO     | errors: (none)
[2026-01-11 09:15:24] 2026-01-11 08:14:21,020 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 09:15:24] 2026-01-11 08:14:21,020 | INFO     | pilot state: finished 
[2026-01-11 09:15:24] 2026-01-11 08:14:21,020 | INFO     | transexitcode: 0
[2026-01-11 09:15:24] 2026-01-11 08:14:21,020 | INFO     | exeerrorcode: 0
[2026-01-11 09:15:24] 2026-01-11 08:14:21,020 | INFO     | exeerrordiag: 
[2026-01-11 09:15:24] 2026-01-11 08:14:21,020 | INFO     | exitcode: 0
[2026-01-11 09:15:24] 2026-01-11 08:14:21,020 | INFO     | exitmsg: OK
[2026-01-11 09:15:24] 2026-01-11 08:14:21,021 | INFO     | cpuconsumptiontime: 35557 s
[2026-01-11 09:15:24] 2026-01-11 08:14:21,021 | INFO     | nevents: 400
[2026-01-11 09:15:24] 2026-01-11 08:14:21,021 | INFO     | neventsw: 0
[2026-01-11 09:15:24] 2026-01-11 08:14:21,021 | INFO     | pid: 2262881
[2026-01-11 09:15:24] 2026-01-11 08:14:21,021 | INFO     | pgrp: 2262881
[2026-01-11 09:15:24] 2026-01-11 08:14:21,021 | INFO     | corecount: 12
[2026-01-11 09:15:24] 2026-01-11 08:14:21,021 | INFO     | event service: False
[2026-01-11 09:15:24] 2026-01-11 08:14:21,021 | INFO     | sizes: {0: 2284073, 3: 2284335, 11: 2284363, 3227: 2318916, 3233: 2319086}
[2026-01-11 09:15:24] 2026-01-11 08:14:21,021 | INFO     | --------------------------------------------------
[2026-01-11 09:15:24] 2026-01-11 08:14:21,021 | INFO     | 
[2026-01-11 09:15:24] 2026-01-11 08:14:21,021 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2026-01-11 09:15:24] 2026-01-11 08:14:21,036 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 09:15:24] 2026-01-11 08:14:21,036 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 09:15:24] 2026-01-11 08:14:21,036 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 09:15:24] 2026-01-11 08:14:21,036 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 09:15:24] 2026-01-11 08:14:21,036 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 09:15:24] 2026-01-11 08:14:21,036 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 09:15:24] 2026-01-11 08:14:21,036 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 09:15:24] 2026-01-11 08:14:21,036 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 09:15:24] 2026-01-11 08:14:21,037 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 09:15:24] 2026-01-11 08:14:21,037 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 09:15:24] 2026-01-11 08:14:21,037 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 09:15:24] 2026-01-11 08:14:21,037 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 09:15:24] 2026-01-11 08:14:21,037 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 09:15:24] 2026-01-11 08:14:21,037 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 09:15:24] 2026-01-11 08:14:21,037 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 09:15:24] 2026-01-11 08:14:21,037 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 09:15:24] 2026-01-11 08:14:21,037 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 09:15:24] 2026-01-11 08:14:21,037 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 09:15:24] 2026-01-11 08:14:21,037 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 09:15:24] 2026-01-11 08:14:21,037 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 09:15:24] 2026-01-11 08:14:21,037 | INFO     | job 6965390343 has completed (purged errors)
[2026-01-11 09:15:24] 2026-01-11 08:14:21,037 | INFO     | overall cleanup function is called
[2026-01-11 09:15:24] 2026-01-11 08:14:22,045 | INFO     | --- collectZombieJob: --- 10, [2262881]
[2026-01-11 09:15:24] 2026-01-11 08:14:22,046 | INFO     | zombie collector waiting for pid 2262881
[2026-01-11 09:15:24] 2026-01-11 08:14:22,046 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 09:15:24] 2026-01-11 08:14:22,046 | INFO     | collected zombie processes
[2026-01-11 09:15:24] 2026-01-11 08:14:22,046 | INFO     | will attempt to kill all subprocesses of pid=2262881
[2026-01-11 09:15:24] 2026-01-11 08:14:22,136 | INFO     | process IDs to be killed: [2262881] (in reverse order)
[2026-01-11 09:15:24] 2026-01-11 08:14:22,174 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 09:15:24] 2026-01-11 08:14:22,175 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 09:15:24] 2026-01-11 08:14:22,178 | INFO     | did not find any defunct processes belonging to 2262881
[2026-01-11 09:15:24] 2026-01-11 08:14:22,181 | INFO     | did not find any defunct processes belonging to 2262881
[2026-01-11 09:15:24] 2026-01-11 08:14:22,181 | INFO     | ready for new job
[2026-01-11 09:15:24] 2026-01-11 08:14:22,181 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 09:15:24] 2026-01-11 08:14:22,182 | INFO     | ***************************************
[2026-01-11 09:15:24] 2026-01-11 08:14:22,182 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 09:15:24] 2026-01-11 08:14:22,182 | INFO     | ***************************************
[2026-01-11 09:15:24] 2026-01-11 08:14:22,182 | INFO     | 
[2026-01-11 09:15:24] 2026-01-11 08:14:22,183 | INFO     | architecture information:
[2026-01-11 09:15:24] 2026-01-11 08:14:22,183 | INFO     | executing command: cat /etc/os-release
[2026-01-11 09:15:24] 2026-01-11 08:14:22,195 | INFO     | cat /etc/os-release:
[2026-01-11 09:15:24] NAME="CentOS Linux"
[2026-01-11 09:15:24] VERSION="7 (Core)"
[2026-01-11 09:15:24] ID="centos"
[2026-01-11 09:15:24] ID_LIKE="rhel fedora"
[2026-01-11 09:15:24] VERSION_ID="7"
[2026-01-11 09:15:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 09:15:24] ANSI_COLOR="0;31"
[2026-01-11 09:15:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 09:15:24] HOME_URL="https://www.centos.org/"
[2026-01-11 09:15:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 09:15:24] 
[2026-01-11 09:15:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 09:15:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 09:15:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 09:15:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 09:15:24] 
[2026-01-11 09:15:24] 2026-01-11 08:14:22,195 | INFO     | ***************************************
[2026-01-11 09:15:24] 2026-01-11 08:14:22,698 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2026-01-11 09:15:24] 2026-01-11 08:14:22,710 | INFO     | sufficient remaining disk space (48858398720 B)
[2026-01-11 09:15:24] 2026-01-11 08:14:22,710 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 09:15:24] 2026-01-11 08:14:22,711 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 09:15:24] 2026-01-11 08:14:22,711 | INFO     | update_server=False
[2026-01-11 09:15:24] 2026-01-11 08:14:22,711 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 09:15:24] 2026-01-11 08:14:22,711 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 09:15:24] 2026-01-11 08:14:22,724 | INFO     | all data control threads have been joined
[2026-01-11 09:15:24] 2026-01-11 08:14:22,821 | INFO     | all job control threads have been joined
[2026-01-11 09:15:24] 2026-01-11 08:14:23,148 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 09:15:24] 2026-01-11 08:14:23,148 | INFO     | aborting loop
[2026-01-11 09:15:24] 2026-01-11 08:14:23,505 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 09:15:24] 2026-01-11 08:14:23,716 | INFO     | [job] retrieve thread has finished
[2026-01-11 09:15:24] 2026-01-11 08:14:23,716 | INFO     | [job] queue monitor thread has finished
[2026-01-11 09:15:24] 2026-01-11 08:14:23,729 | INFO     | [data] control thread has finished
[2026-01-11 09:15:24] 2026-01-11 08:14:23,826 | INFO     | [job] control thread has finished
[2026-01-11 09:15:24] 2026-01-11 08:14:23,959 | INFO     | all payload control threads have been joined
[2026-01-11 09:15:24] 2026-01-11 08:14:23,991 | INFO     | [payload] validate_post thread has finished
[2026-01-11 09:15:24] 2026-01-11 08:14:24,154 | INFO     | [job] job monitor thread has finished
[2026-01-11 09:15:24] 2026-01-11 08:14:24,694 | INFO     | [job] validate thread has finished
[2026-01-11 09:15:24] 2026-01-11 08:14:24,822 | INFO     | [data] copytool_in thread has finished
[2026-01-11 09:15:24] 2026-01-11 08:14:24,878 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 09:15:24] 2026-01-11 08:14:24,913 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 09:15:24] 2026-01-11 08:14:24,940 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 09:15:24] 2026-01-11 08:14:24,954 | INFO     | [payload] failed_post thread has finished
[2026-01-11 09:15:24] 2026-01-11 08:14:24,964 | INFO     | [payload] control thread has finished
[2026-01-11 09:15:24] 2026-01-11 08:14:25,510 | INFO     | [data] copytool_out thread has finished
[2026-01-11 09:15:24] 2026-01-11 08:14:26,073 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 09:15:24] 2026-01-11 08:14:30,079 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 09:15:24] 2026-01-11 08:14:32,985 | INFO     | job.realtimelogging is not enabled
[2026-01-11 09:15:24] 2026-01-11 08:14:33,990 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 09:15:24] 2026-01-11 08:14:52,632 | INFO     | PID=2256202 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 09:15:24] 2026-01-11 08:14:52,632 | INFO     | .. there are 2 such processes running
[2026-01-11 09:15:24] 2026-01-11 08:14:52,633 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 09:15:24] 2026-01-11 08:14:52,633 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 09:15:24] 2026-01-11 08:14:52,633 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 09:15:24] 2026-01-11 08:15:19,356 | INFO     | [monitor] cgroup control has ended
[2026-01-11 09:15:24] 2026-01-11 08:15:19,518 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139636403271488)>', '<ExcThread(monitor, started 139636047320832)>']
[2026-01-11 09:15:24] 2026-01-11 08:15:19,765 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 09:15:24] 2026-01-11 08:15:19,765 | INFO     | [monitor] control thread has ended
[2026-01-11 09:15:24] 2026-01-11 08:15:24,543 | INFO     | all workflow threads have been joined
[2026-01-11 09:15:24] 2026-01-11 08:15:24,543 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 09:15:24] 2026-01-11 08:15:24,544 | INFO     | traces error code: 0
[2026-01-11 09:15:24] 2026-01-11 08:15:24,544 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 09:15:24] 2026-01-11 08:15:24,608 [wrapper] ==== pilot stdout END ====
[2026-01-11 09:15:24] 2026-01-11 08:15:24,610 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 09:15:24] 2026-01-11 08:15:24,612 [wrapper] pilotpid: 2256202
[2026-01-11 09:15:24] 2026-01-11 08:15:24,614 [wrapper] Pilot exit status: 0
[2026-01-11 09:15:24] 2026-01-11 08:15:24,622 [wrapper] pandaids: 6965390343
[2026-01-11 09:15:24] 2026-01-11 08:15:24,648 [wrapper] cleanup supervisor_pilot 2313355 2256203
[2026-01-11 09:15:24] 2026-01-11 08:15:24,651 [wrapper] Test setup, not cleaning
[2026-01-11 09:15:24] 2026-01-11 08:15:24,652 [wrapper] apfmon messages muted
[2026-01-11 09:15:24] 2026-01-11 08:15:24,654 [wrapper] ==== wrapper stdout END ====
[2026-01-11 09:15:24] 2026-01-11 08:15:24,656 [wrapper] ==== wrapper stderr END ====
[2026-01-11 09:15:24]  *** Error codes and diagnostics ***
[2026-01-11 09:15:24]     "exeErrorCode": 0,
[2026-01-11 09:15:24]     "exeErrorDiag": "",
[2026-01-11 09:15:24]     "pilotErrorCode": 0,
[2026-01-11 09:15:24]     "pilotErrorDiag": "",
[2026-01-11 09:15:24]  *** Listing of results directory ***
[2026-01-11 09:15:24] total 1158668
[2026-01-11 09:15:24] -rw-r--r-- 1 boinc boinc      5112 Jan 10 14:29 queuedata.json
[2026-01-11 09:15:24] -rw-r--r-- 1 boinc boinc    579449 Jan 10 14:29 pilot3.tar.gz
[2026-01-11 09:15:24] -rwx------ 1 boinc boinc     36322 Jan 10 14:29 runpilot2-wrapper.sh
[2026-01-11 09:15:24] -rw-r--r-- 1 boinc boinc       100 Jan 11 08:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 09:15:24] -rwxr-xr-x 1 boinc boinc      7986 Jan 11 08:20 run_atlas
[2026-01-11 09:15:24] -rw-r--r-- 1 boinc boinc       105 Jan 11 08:20 job.xml
[2026-01-11 09:15:24] -rw-r--r-- 2 boinc boinc 928736590 Jan 11 08:20 EVNT.48039248._000046.pool.root.1
[2026-01-11 09:15:24] -rw-r--r-- 2 boinc boinc     15847 Jan 11 08:20 start_atlas.sh
[2026-01-11 09:15:24] drwxrwx--x 2 boinc boinc      4096 Jan 11 08:20 shared
[2026-01-11 09:15:24] -rw-r--r-- 2 boinc boinc    592423 Jan 11 08:20 input.tar.gz
[2026-01-11 09:15:24] -rw-r--r-- 1 boinc boinc      9456 Jan 11 08:20 init_data.xml
[2026-01-11 09:15:24] -rw-r--r-- 1 boinc boinc         0 Jan 11 08:20 boinc_lockfile
[2026-01-11 09:15:24] -rw-r--r-- 1 boinc boinc      2590 Jan 11 08:20 pandaJob.out
[2026-01-11 09:15:24] -rw------- 1 boinc boinc    989548 Jan 11 08:20 agis_schedconf.cvmfs.json
[2026-01-11 09:15:24] -rw------- 1 boinc boinc   1516240 Jan 11 08:20 agis_ddmendpoints.agis.ALL.json
[2026-01-11 09:15:24] drwx------ 5 boinc boinc      4096 Jan 11 08:20 pilot3
[2026-01-11 09:15:24] -rw------- 1 boinc boinc 252074128 Jan 11 09:13 HITS.48039250._006753.pool.root.1
[2026-01-11 09:15:24] -rw-r--r-- 1 boinc boinc       530 Jan 11 09:14 boinc_task_state.xml
[2026-01-11 09:15:24] -rw------- 1 boinc boinc      1012 Jan 11 09:14 memory_monitor_summary.json
[2026-01-11 09:15:24] -rw------- 1 boinc boinc    369633 Jan 11 09:14 log.48039250._006753.job.log.tgz.1
[2026-01-11 09:15:24] -rw------- 1 boinc boinc      7761 Jan 11 09:14 heartbeat.json
[2026-01-11 09:15:24] -rw------- 1 boinc boinc        95 Jan 11 09:14 pilot_heartbeat.json
[2026-01-11 09:15:24] -rw-r--r-- 1 boinc boinc      8192 Jan 11 09:15 boinc_mmap_file
[2026-01-11 09:15:24] -rw-r--r-- 1 boinc boinc        27 Jan 11 09:15 wrapper_checkpoint.txt
[2026-01-11 09:15:24] -rw------- 1 boinc boinc      4895 Jan 11 09:15 pilotlog.txt
[2026-01-11 09:15:24] -rw------- 1 boinc boinc    500661 Jan 11 09:15 log.48039250._006753.job.log.1
[2026-01-11 09:15:24] -rw------- 1 boinc boinc       357 Jan 11 09:15 output.list
[2026-01-11 09:15:24] -rw-r--r-- 1 boinc boinc       620 Jan 11 09:15 runtime_log
[2026-01-11 09:15:24] -rw------- 1 boinc boinc    890880 Jan 11 09:15 result.tar.gz
[2026-01-11 09:15:24] -rw-r--r-- 1 boinc boinc      8854 Jan 11 09:15 runtime_log.err
[2026-01-11 09:15:24] -rw------- 1 boinc boinc       659 Jan 11 09:15 BIiNDmRDoy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtsmKDmzq8Hrm.diag
[2026-01-11 09:15:24] -rw-r--r-- 1 boinc boinc     21863 Jan 11 09:15 stderr.txt
[2026-01-11 09:15:24] HITS file was successfully produced:
[2026-01-11 09:15:24] -rw------- 1 boinc boinc 252074128 Jan 11 09:13 shared/HITS.pool.root.1
[2026-01-11 09:15:24]  *** Contents of shared directory: ***
[2026-01-11 09:15:24] total 1154616
[2026-01-11 09:15:24] -rw-r--r-- 2 boinc boinc 928736590 Jan 11 08:20 ATLAS.root_0
[2026-01-11 09:15:24] -rw-r--r-- 2 boinc boinc     15847 Jan 11 08:20 start_atlas.sh
[2026-01-11 09:15:24] -rw-r--r-- 2 boinc boinc    592423 Jan 11 08:20 input.tar.gz
[2026-01-11 09:15:24] -rw------- 1 boinc boinc 252074128 Jan 11 09:13 HITS.pool.root.1
[2026-01-11 09:15:24] -rw------- 1 boinc boinc    890880 Jan 11 09:15 result.tar.gz
09:15:26 (2252342): run_atlas exited; CPU time 35586.529816
09:15:26 (2252342): called boinc_finish(0)

</stderr_txt>
]]>

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