Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:00:35 (774813): wrapper (7.7.26015): starting
20:00:35 (774813): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 20:00:35] Arguments: --nthreads 12
[2026-01-10 20:00:35] Threads: 12
[2026-01-10 20:00:35] Checking for CVMFS
[2026-01-10 20:00:36] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 20:00:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 20:00:37] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 20:00:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 20:00:38] 2.13.3.0 8980 95605 353032 154998 0 487 24158499 32935936 23862 16776704 0 467975883 99.722 334130155 33565 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 20:00:38] CVMFS is ok
[2026-01-10 20:00:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 20:00:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 20:00:38] Further information can be found at the LHC@home message board.
[2026-01-10 20:00:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 20:00:38] Checking for apptainer binary...
[2026-01-10 20:00:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 20:00:38] Running /usr/bin/apptainer --version
[2026-01-10 20:00:40] apptainer version 1.4.5-2.el9
[2026-01-10 20:00:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 20:00:42] c-5-4.aglt2.org
[2026-01-10 20:00:42] apptainer works
[2026-01-10 20:00:42] Set ATHENA_PROC_NUMBER=12
[2026-01-10 20:00:42] Set ATHENA_CORE_NUMBER=12
[2026-01-10 20:00:42] Starting ATLAS job with PandaID=6965390280
[2026-01-10 20:00:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 11:50:18]  *** The last 200 lines of the pilot log: ***
[2026-01-11 11:50:18] 2026-01-11 16:49:36,679 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1565000000005
[2026-01-11 11:50:18] 2026-01-11 16:49:36,773 | INFO     | time since job start (56862s) is within the limit (349056.0s)
[2026-01-11 11:50:18] 2026-01-11 16:49:36,879 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6965390280/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 11:50:18] 2026-01-11 16:49:36,880 | INFO     | extracted standard info from prmon json
[2026-01-11 11:50:18] 2026-01-11 16:49:36,880 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 11:50:18] 2026-01-11 16:49:36,880 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 11:50:18] 2026-01-11 16:49:36,920 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 11:50:18] 2026-01-11 16:49:36,921 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 11:50:18] 2026-01-11 16:49:37,137 | INFO     | fitting pss+swap vs Time
[2026-01-11 11:50:18] 2026-01-11 16:49:37,192 | INFO     | sum of square deviations: 248608324079.6556
[2026-01-11 11:50:18] 2026-01-11 16:49:37,294 | INFO     | sum of deviations: 278560907782.5077
[2026-01-11 11:50:18] 2026-01-11 16:49:37,295 | INFO     | mean x: 1768121771.474704
[2026-01-11 11:50:18] 2026-01-11 16:49:37,295 | INFO     | mean y: 2766857.5748116253
[2026-01-11 11:50:18] 2026-01-11 16:49:37,295 | INFO     | intersect: -1978380022.9865959
[2026-01-11 11:50:18] 2026-01-11 16:49:37,309 | INFO     | chi2: 3.4170760205658963
[2026-01-11 11:50:18] 2026-01-11 16:49:37,310 | INFO     | sum of square deviations: 244615920678.60907
[2026-01-11 11:50:18] 2026-01-11 16:49:37,381 | INFO     | sum of deviations: 408728279311.5295
[2026-01-11 11:50:18] 2026-01-11 16:49:37,381 | INFO     | mean x: 1768121618.979437
[2026-01-11 11:50:18] 2026-01-11 16:49:37,382 | INFO     | mean y: 2771813.133116883
[2026-01-11 11:50:18] 2026-01-11 16:49:37,382 | INFO     | intersect: -2951579256.6342626
[2026-01-11 11:50:18] 2026-01-11 16:49:37,383 | INFO     | chi2: 1.9889881625025991
[2026-01-11 11:50:18] 2026-01-11 16:49:37,383 | INFO     | current chi2=1.9889881625025991 (change=41.792686187496464 %)
[2026-01-11 11:50:18] 2026-01-11 16:49:37,384 | INFO     | sum of square deviations: 240666438221.48853
[2026-01-11 11:50:18] 2026-01-11 16:49:37,403 | INFO     | sum of deviations: 405304312571.85345
[2026-01-11 11:50:18] 2026-01-11 16:49:37,404 | INFO     | mean x: 1768121466.4831338
[2026-01-11 11:50:18] 2026-01-11 16:49:37,404 | INFO     | mean y: 2771680.926006529
[2026-01-11 11:50:18] 2026-01-11 16:49:37,404 | INFO     | intersect: -2974906722.478802
[2026-01-11 11:50:18] 2026-01-11 16:49:37,405 | INFO     | chi2: 1.9889905241881742
[2026-01-11 11:50:18] 2026-01-11 16:49:37,405 | INFO     | current chi2=1.9889905241881742 (change=-0.00011873804075995256 %)
[2026-01-11 11:50:18] 2026-01-11 16:49:37,406 | INFO     | right removable region: 918
[2026-01-11 11:50:18] 2026-01-11 16:49:37,407 | INFO     | sum of square deviations: 244615254613.7228
[2026-01-11 11:50:18] 2026-01-11 16:49:37,426 | INFO     | sum of deviations: 68306228108.97834
[2026-01-11 11:50:18] 2026-01-11 16:49:37,426 | INFO     | mean x: 1768121923.982684
[2026-01-11 11:50:18] 2026-01-11 16:49:37,426 | INFO     | mean y: 2774874.686147186
[2026-01-11 11:50:18] 2026-01-11 16:49:37,427 | INFO     | intersect: -490954511.3031414
[2026-01-11 11:50:18] 2026-01-11 16:49:37,428 | INFO     | chi2: 1.5380582472475792
[2026-01-11 11:50:18] 2026-01-11 16:49:37,428 | INFO     | current chi2=1.5380582472475792 (change=54.9890538580156 %)
[2026-01-11 11:50:18] 2026-01-11 16:49:37,434 | INFO     | sum of square deviations: 240665219185.6521
[2026-01-11 11:50:18] 2026-01-11 16:49:37,473 | INFO     | sum of deviations: 36324236683.192665
[2026-01-11 11:50:18] 2026-01-11 16:49:37,473 | INFO     | mean x: 1768122076.4896626
[2026-01-11 11:50:18] 2026-01-11 16:49:37,473 | INFO     | mean y: 2776108.072905332
[2026-01-11 11:50:18] 2026-01-11 16:49:37,473 | INFO     | intersect: -264091223.27024198
[2026-01-11 11:50:18] 2026-01-11 16:49:37,475 | INFO     | chi2: 1.5023247729121836
[2026-01-11 11:50:18] 2026-01-11 16:49:37,475 | INFO     | current chi2=1.5023247729121836 (change=2.3232848560411945 %)
[2026-01-11 11:50:18] 2026-01-11 16:49:37,475 | INFO     | left removable region: 20
[2026-01-11 11:50:18] 2026-01-11 16:49:37,478 | INFO     | sum of square deviations: 224540737649.9292
[2026-01-11 11:50:18] 2026-01-11 16:49:37,514 | INFO     | sum of deviations: 150664548472.0734
[2026-01-11 11:50:18] 2026-01-11 16:49:37,514 | INFO     | mean x: 1768122046.0089087
[2026-01-11 11:50:18] 2026-01-11 16:49:37,515 | INFO     | mean y: 2781610.1158129177
[2026-01-11 11:50:18] 2026-01-11 16:49:37,515 | INFO     | intersect: -1183610278.0268722
[2026-01-11 11:50:18] 2026-01-11 16:49:37,516 | INFO     | chi2: 0.022176329894367384
[2026-01-11 11:50:18] 2026-01-11 16:49:37,516 | INFO     | current memory leak: 0.67 B/s (using 898 data points, chi2=0.02)
[2026-01-11 11:50:18] 2026-01-11 16:49:37,521 | INFO     | could have reported an average CPU frequency of 2600 MHz (34 samples)
[2026-01-11 11:50:18] 2026-01-11 16:49:37,522 | INFO     | ..............................
[2026-01-11 11:50:18] 2026-01-11 16:49:37,522 | INFO     | . Timing measurements:
[2026-01-11 11:50:18] 2026-01-11 16:49:37,522 | INFO     | . get job = 0 s
[2026-01-11 11:50:18] 2026-01-11 16:49:37,522 | INFO     | . initial setup = 4 s
[2026-01-11 11:50:18] 2026-01-11 16:49:37,522 | INFO     | . payload setup = 40 s
[2026-01-11 11:50:18] 2026-01-11 16:49:37,522 | INFO     | . stage-in = 0 s
[2026-01-11 11:50:18] 2026-01-11 16:49:37,522 | INFO     | . payload execution = 56686 s
[2026-01-11 11:50:18] 2026-01-11 16:49:37,522 | INFO     | . stage-out = 10 s
[2026-01-11 11:50:18] 2026-01-11 16:49:37,522 | INFO     | . log creation = 1 s
[2026-01-11 11:50:18] 2026-01-11 16:49:37,523 | INFO     | ..............................
[2026-01-11 11:50:18] 2026-01-11 16:49:39,012 | INFO     | 
[2026-01-11 11:50:18] 2026-01-11 16:49:39,013 | INFO     | job summary report
[2026-01-11 11:50:18] 2026-01-11 16:49:39,013 | INFO     | --------------------------------------------------
[2026-01-11 11:50:18] 2026-01-11 16:49:39,013 | INFO     | PanDA job id: 6965390280
[2026-01-11 11:50:18] 2026-01-11 16:49:39,013 | INFO     | task id: 48039250
[2026-01-11 11:50:18] 2026-01-11 16:49:39,013 | INFO     | errors: (none)
[2026-01-11 11:50:18] 2026-01-11 16:49:39,014 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 11:50:18] 2026-01-11 16:49:39,014 | INFO     | pilot state: finished 
[2026-01-11 11:50:18] 2026-01-11 16:49:39,035 | INFO     | transexitcode: 0
[2026-01-11 11:50:18] 2026-01-11 16:49:39,035 | INFO     | exeerrorcode: 0
[2026-01-11 11:50:18] 2026-01-11 16:49:39,035 | INFO     | exeerrordiag: 
[2026-01-11 11:50:18] 2026-01-11 16:49:39,035 | INFO     | exitcode: 0
[2026-01-11 11:50:18] 2026-01-11 16:49:39,035 | INFO     | exitmsg: OK
[2026-01-11 11:50:18] 2026-01-11 16:49:39,035 | INFO     | cpuconsumptiontime: 71314 s
[2026-01-11 11:50:18] 2026-01-11 16:49:39,035 | INFO     | nevents: 400
[2026-01-11 11:50:18] 2026-01-11 16:49:39,035 | INFO     | neventsw: 0
[2026-01-11 11:50:18] 2026-01-11 16:49:39,036 | INFO     | pid: 788036
[2026-01-11 11:50:18] 2026-01-11 16:49:39,036 | INFO     | pgrp: 788036
[2026-01-11 11:50:18] 2026-01-11 16:49:39,036 | INFO     | corecount: 12
[2026-01-11 11:50:18] 2026-01-11 16:49:39,036 | INFO     | event service: False
[2026-01-11 11:50:18] 2026-01-11 16:49:39,036 | INFO     | sizes: {0: 2283902, 1: 2283902, 2: 2284101, 3: 2284129, 14: 2284157, 24: 2284185, 34: 2284603, 35: 2284631, 56733: 2332575, 56734: 2332574, 56746: 2341628, 56749: 
[2026-01-11 11:50:18] 2026-01-11 16:49:39,036 | INFO     | --------------------------------------------------
[2026-01-11 11:50:18] 2026-01-11 16:49:39,036 | INFO     | 
[2026-01-11 11:50:18] 2026-01-11 16:49:39,036 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-11 11:50:18] 2026-01-11 16:49:39,285 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 11:50:18] 2026-01-11 16:49:39,285 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 11:50:18] 2026-01-11 16:49:39,285 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 11:50:18] 2026-01-11 16:49:39,285 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 11:50:18] 2026-01-11 16:49:39,285 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 11:50:18] 2026-01-11 16:49:39,286 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 11:50:18] 2026-01-11 16:49:39,286 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 11:50:18] 2026-01-11 16:49:39,286 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 11:50:18] 2026-01-11 16:49:39,286 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 11:50:18] 2026-01-11 16:49:39,286 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 11:50:18] 2026-01-11 16:49:39,286 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 11:50:18] 2026-01-11 16:49:39,286 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 11:50:18] 2026-01-11 16:49:39,286 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 11:50:18] 2026-01-11 16:49:39,286 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 11:50:18] 2026-01-11 16:49:39,286 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 11:50:18] 2026-01-11 16:49:39,287 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 11:50:18] 2026-01-11 16:49:39,287 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 11:50:18] 2026-01-11 16:49:39,287 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 11:50:18] 2026-01-11 16:49:39,287 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 11:50:18] 2026-01-11 16:49:39,287 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 11:50:18] 2026-01-11 16:49:39,287 | INFO     | job 6965390280 has completed (purged errors)
[2026-01-11 11:50:18] 2026-01-11 16:49:39,287 | INFO     | overall cleanup function is called
[2026-01-11 11:50:18] 2026-01-11 16:49:40,375 | INFO     | --- collectZombieJob: --- 10, [788036]
[2026-01-11 11:50:18] 2026-01-11 16:49:40,377 | INFO     | zombie collector waiting for pid 788036
[2026-01-11 11:50:18] 2026-01-11 16:49:40,377 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 11:50:18] 2026-01-11 16:49:40,377 | INFO     | collected zombie processes
[2026-01-11 11:50:18] 2026-01-11 16:49:40,377 | INFO     | will attempt to kill all subprocesses of pid=788036
[2026-01-11 11:50:18] 2026-01-11 16:49:41,197 | INFO     | PID=779576 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-11 11:50:18] 2026-01-11 16:49:41,197 | INFO     | .. there are 34 such processes running
[2026-01-11 11:50:18] 2026-01-11 16:49:43,358 | INFO     | process IDs to be killed: [788036] (in reverse order)
[2026-01-11 11:50:18] 2026-01-11 16:49:43,557 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 11:50:18] 2026-01-11 16:49:43,557 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 11:50:18] 2026-01-11 16:49:43,618 | INFO     | did not find any defunct processes belonging to 788036
[2026-01-11 11:50:18] 2026-01-11 16:49:43,735 | INFO     | did not find any defunct processes belonging to 788036
[2026-01-11 11:50:18] 2026-01-11 16:49:43,735 | INFO     | ready for new job
[2026-01-11 11:50:18] 2026-01-11 16:49:43,736 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 11:50:18] 2026-01-11 16:49:43,764 | INFO     | ***************************************
[2026-01-11 11:50:18] 2026-01-11 16:49:43,765 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 11:50:18] 2026-01-11 16:49:43,765 | INFO     | ***************************************
[2026-01-11 11:50:18] 2026-01-11 16:49:43,765 | INFO     | 
[2026-01-11 11:50:18] 2026-01-11 16:49:43,784 | INFO     | architecture information:
[2026-01-11 11:50:18] 2026-01-11 16:49:43,808 | INFO     | executing command: cat /etc/os-release
[2026-01-11 11:50:18] 2026-01-11 16:49:44,003 | INFO     | cat /etc/os-release:
[2026-01-11 11:50:18] NAME="CentOS Linux"
[2026-01-11 11:50:18] VERSION="7 (Core)"
[2026-01-11 11:50:18] ID="centos"
[2026-01-11 11:50:18] ID_LIKE="rhel fedora"
[2026-01-11 11:50:18] VERSION_ID="7"
[2026-01-11 11:50:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 11:50:18] ANSI_COLOR="0;31"
[2026-01-11 11:50:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 11:50:18] HOME_URL="https://www.centos.org/"
[2026-01-11 11:50:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 11:50:18] 
[2026-01-11 11:50:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 11:50:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 11:50:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 11:50:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 11:50:18] 
[2026-01-11 11:50:18] 2026-01-11 16:49:44,003 | INFO     | ***************************************
[2026-01-11 11:50:18] 2026-01-11 16:49:44,507 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-11 11:50:18] 2026-01-11 16:49:44,605 | INFO     | sufficient remaining disk space (73088892928 B)
[2026-01-11 11:50:18] 2026-01-11 16:49:44,605 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 11:50:18] 2026-01-11 16:49:44,605 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 11:50:18] 2026-01-11 16:49:44,605 | INFO     | update_server=False
[2026-01-11 11:50:18] 2026-01-11 16:49:44,606 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 11:50:18] 2026-01-11 16:49:44,606 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 11:50:18] 2026-01-11 16:49:44,606 | INFO     | aborting loop
[2026-01-11 11:50:18] 2026-01-11 16:49:44,606 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 11:50:18] 2026-01-11 16:49:44,888 | INFO     | all payload control threads have been joined
[2026-01-11 11:50:18] 2026-01-11 16:49:45,186 | INFO     | all job control threads have been joined
[2026-01-11 11:50:18] 2026-01-11 16:49:45,303 | INFO     | all data control threads have been joined
[2026-01-11 11:50:18] 2026-01-11 16:49:45,611 | INFO     | [job] retrieve thread has finished
[2026-01-11 11:50:18] 2026-01-11 16:49:45,612 | INFO     | [job] job monitor thread has finished
[2026-01-11 11:50:18] 2026-01-11 16:49:45,894 | INFO     | [payload] control thread has finished
[2026-01-11 11:50:18] 2026-01-11 16:49:46,202 | INFO     | [job] control thread has finished
[2026-01-11 11:50:18] 2026-01-11 16:49:46,230 | INFO     | [job] validate thread has finished
[2026-01-11 11:50:18] 2026-01-11 16:49:46,231 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 11:50:18] 2026-01-11 16:49:46,231 | INFO     | [payload] failed_post thread has finished
[2026-01-11 11:50:18] 2026-01-11 16:49:46,272 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 11:50:18] 2026-01-11 16:49:46,309 | INFO     | [data] control thread has finished
[2026-01-11 11:50:18] 2026-01-11 16:49:46,591 | INFO     | [data] copytool_in thread has finished
[2026-01-11 11:50:18] 2026-01-11 16:49:46,601 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 11:50:18] 2026-01-11 16:49:46,603 | INFO     | [payload] validate_post thread has finished
[2026-01-11 11:50:18] 2026-01-11 16:49:46,613 | INFO     | [data] copytool_out thread has finished
[2026-01-11 11:50:18] 2026-01-11 16:49:46,615 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 11:50:18] 2026-01-11 16:49:47,420 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 11:50:18] 2026-01-11 16:49:47,593 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 11:50:18] 2026-01-11 16:49:48,599 | INFO     | [job] queue monitor thread has finished
[2026-01-11 11:50:18] 2026-01-11 16:49:51,488 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 11:50:18] 2026-01-11 16:49:53,318 | INFO     | [monitor] cgroup control has ended
[2026-01-11 11:50:18] 2026-01-11 16:49:54,304 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140588780308288)>', '<ExcThread(monitor, started 140587701368576)>']
[2026-01-11 11:50:18] 2026-01-11 16:49:59,343 | INFO     | all workflow threads have been joined
[2026-01-11 11:50:18] 2026-01-11 16:49:59,344 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 11:50:18] 2026-01-11 16:49:59,356 | INFO     | traces error code: 0
[2026-01-11 11:50:18] 2026-01-11 16:49:59,357 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 11:50:18] 2026-01-11 16:50:16,374 | INFO     | PID=779576 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-11 11:50:18] 2026-01-11 16:50:16,374 | INFO     | .. there are 35 such processes running
[2026-01-11 11:50:18] 2026-01-11 16:50:16,422 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 11:50:18] 2026-01-11 16:50:16,423 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 11:50:18] 2026-01-11 16:50:16,423 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 11:50:18] 2026-01-11 16:50:16,423 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 11:50:18] 2026-01-11 16:50:16,423 | INFO     | [monitor] control thread has ended
[2026-01-11 11:50:18] 2026-01-11 16:50:17,334 [wrapper] ==== pilot stdout END ====
[2026-01-11 11:50:18] 2026-01-11 16:50:17,383 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 11:50:18] 2026-01-11 16:50:17,442 [wrapper] pilotpid: 779576
[2026-01-11 11:50:18] 2026-01-11 16:50:17,468 [wrapper] Pilot exit status: 0
[2026-01-11 11:50:18] 2026-01-11 16:50:17,605 [wrapper] pandaids: 6965390280
[2026-01-11 11:50:18] 2026-01-11 16:50:17,729 [wrapper] cleanup supervisor_pilot   20155 779577
[2026-01-11 11:50:18] 2026-01-11 16:50:17,737 [wrapper] Test setup, not cleaning
[2026-01-11 11:50:18] 2026-01-11 16:50:17,745 [wrapper] apfmon messages muted
[2026-01-11 11:50:18] 2026-01-11 16:50:17,757 [wrapper] ==== wrapper stdout END ====
[2026-01-11 11:50:18] 2026-01-11 16:50:17,762 [wrapper] ==== wrapper stderr END ====
[2026-01-11 11:50:18]  *** Error codes and diagnostics ***
[2026-01-11 11:50:18]     "exeErrorCode": 0,
[2026-01-11 11:50:18]     "exeErrorDiag": "",
[2026-01-11 11:50:18]     "pilotErrorCode": 0,
[2026-01-11 11:50:18]     "pilotErrorDiag": "",
[2026-01-11 11:50:18]  *** Listing of results directory ***
[2026-01-11 11:50:18] total 1172084
[2026-01-11 11:50:18] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:14 pilot3.tar.gz
[2026-01-11 11:50:18] -rwx------. 1 boincer umatlas     36322 Jan 10 08:26 runpilot2-wrapper.sh
[2026-01-11 11:50:18] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:26 queuedata.json
[2026-01-11 11:50:18] -rw-r--r--. 1 boincer umatlas       100 Jan 10 20:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 11:50:18] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 20:00 run_atlas
[2026-01-11 11:50:18] -rw-r--r--. 1 boincer umatlas       105 Jan 10 20:00 job.xml
[2026-01-11 11:50:18] -rw-r--r--. 2 boincer umatlas 921926470 Jan 10 20:00 EVNT.48039248._000043.pool.root.1
[2026-01-11 11:50:18] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 20:00 shared
[2026-01-11 11:50:18] -rw-r--r--. 2 boincer umatlas    592428 Jan 10 20:00 input.tar.gz
[2026-01-11 11:50:18] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 20:00 start_atlas.sh
[2026-01-11 11:50:18] -rw-r--r--. 1 boincer umatlas         0 Jan 10 20:00 boinc_lockfile
[2026-01-11 11:50:18] -rw-r--r--. 1 boincer umatlas      2590 Jan 10 20:00 pandaJob.out
[2026-01-11 11:50:18] -rw-------. 1 boincer umatlas        57 Jan 10 20:00 setup.sh.local
[2026-01-11 11:50:18] -rw-------. 1 boincer umatlas    989540 Jan 10 20:01 agis_schedconf.cvmfs.json
[2026-01-11 11:50:18] drwx------. 5 boincer umatlas      4096 Jan 10 20:01 pilot3
[2026-01-11 11:50:18] -rw-------. 1 boincer umatlas 260650751 Jan 11 11:46 HITS.48039250._006690.pool.root.1
[2026-01-11 11:50:18] -rw-r--r--. 1 boincer umatlas       532 Jan 11 11:46 boinc_task_state.xml
[2026-01-11 11:50:18] -rw-r--r--. 1 boincer umatlas      6658 Jan 11 11:46 init_data.xml
[2026-01-11 11:50:18] -rw-------. 1 boincer umatlas      1064 Jan 11 11:48 memory_monitor_summary.json
[2026-01-11 11:50:18] -rw-------. 1 boincer umatlas   1516240 Jan 11 11:48 agis_ddmendpoints.agis.ALL.json
[2026-01-11 11:50:18] -rw-------. 1 boincer umatlas    963327 Jan 11 11:48 log.48039250._006690.job.log.tgz.1
[2026-01-11 11:50:18] -rw-------. 1 boincer umatlas      7838 Jan 11 11:49 heartbeat.json
[2026-01-11 11:50:18] -rw-r--r--. 1 boincer umatlas      8192 Jan 11 11:50 boinc_mmap_file
[2026-01-11 11:50:18] -rw-r--r--. 1 boincer umatlas        28 Jan 11 11:50 wrapper_checkpoint.txt
[2026-01-11 11:50:18] -rw-------. 1 boincer umatlas        95 Jan 11 11:50 pilot_heartbeat.json
[2026-01-11 11:50:18] -rw-------. 1 boincer umatlas       822 Jan 11 11:50 pilotlog.txt
[2026-01-11 11:50:18] -rw-------. 1 boincer umatlas   5895227 Jan 11 11:50 log.48039250._006690.job.log.1
[2026-01-11 11:50:18] -rw-------. 1 boincer umatlas       357 Jan 11 11:50 output.list
[2026-01-11 11:50:18] -rw-r--r--. 1 boincer umatlas       620 Jan 11 11:50 runtime_log
[2026-01-11 11:50:18] -rw-------. 1 boincer umatlas   6881280 Jan 11 11:50 result.tar.gz
[2026-01-11 11:50:18] -rw-r--r--. 1 boincer umatlas      9330 Jan 11 11:50 runtime_log.err
[2026-01-11 11:50:18] -rw-------. 1 boincer umatlas       658 Jan 11 11:50 iReKDmLAoy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTrmKDmdtVFLn.diag
[2026-01-11 11:50:18] -rw-r--r--. 1 boincer umatlas     21333 Jan 11 11:50 stderr.txt
[2026-01-11 11:50:18] HITS file was successfully produced:
[2026-01-11 11:50:18] -rw-------. 1 boincer umatlas 260650751 Jan 11 11:46 shared/HITS.pool.root.1
[2026-01-11 11:50:18]  *** Contents of shared directory: ***
[2026-01-11 11:50:18] total 1162188
[2026-01-11 11:50:18] -rw-r--r--. 2 boincer umatlas 921926470 Jan 10 20:00 ATLAS.root_0
[2026-01-11 11:50:18] -rw-r--r--. 2 boincer umatlas    592428 Jan 10 20:00 input.tar.gz
[2026-01-11 11:50:18] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 20:00 start_atlas.sh
[2026-01-11 11:50:18] -rw-------. 1 boincer umatlas 260650751 Jan 11 11:46 HITS.pool.root.1
[2026-01-11 11:50:18] -rw-------. 1 boincer umatlas   6881280 Jan 11 11:50 result.tar.gz
11:50:19 (774813): run_atlas exited; CPU time 73466.963678
11:50:19 (774813): called boinc_finish(0)

</stderr_txt>
]]>

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