Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:29:46 (2303592): wrapper (7.7.26015): starting
08:29:46 (2303592): wrapper: running run_atlas (--nthreads 10)
[2026-01-10 08:29:46] Arguments: --nthreads 10
[2026-01-10 08:29:46] Threads: 10
[2026-01-10 08:29:46] Checking for CVMFS
[2026-01-10 08:29:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 08:29:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 08:29:46] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 08:29:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 08:29:46] 2.13.3.0 16090 94863 393376 154981 2 329 29840152 32935937 18823 16776704 0 1018182871 99.550 1178297709 52168 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 08:29:46] CVMFS is ok
[2026-01-10 08:29:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 08:29:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 08:29:46] Further information can be found at the LHC@home message board.
[2026-01-10 08:29:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 08:29:46] Checking for apptainer binary...
[2026-01-10 08:29:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 08:29:46] Running /usr/bin/apptainer --version
[2026-01-10 08:29:46] apptainer version 1.4.5-2.el9
[2026-01-10 08:29:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 08:29:46] c7-9-15.aglt2.org
[2026-01-10 08:29:46] apptainer works
[2026-01-10 08:29:46] Set ATHENA_PROC_NUMBER=10
[2026-01-10 08:29:46] Set ATHENA_CORE_NUMBER=10
[2026-01-10 08:29:46] Starting ATLAS job with PandaID=6963383865
[2026-01-10 08:29:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 13:37:51]  *** The last 200 lines of the pilot log: ***
[2026-01-10 13:37:51] 2026-01-10 18:37:17,135 | INFO     | time since job start (18440s) is within the limit (349056.0s)
[2026-01-10 13:37:51] 2026-01-10 18:37:17,924 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-10 13:37:51] 2026-01-10 18:37:17,929 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.1073046875017
[2026-01-10 13:37:51] 2026-01-10 18:37:17,942 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963383865/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 13:37:51] 2026-01-10 18:37:17,943 | INFO     | extracted standard info from prmon json
[2026-01-10 13:37:51] 2026-01-10 18:37:17,943 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 13:37:51] 2026-01-10 18:37:17,943 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 13:37:51] 2026-01-10 18:37:17,946 | INFO     | fitting pss+swap vs Time
[2026-01-10 13:37:51] 2026-01-10 18:37:17,946 | INFO     | sum of square deviations: 8538146675.446974
[2026-01-10 13:37:51] 2026-01-10 18:37:17,948 | INFO     | sum of deviations: 274604618738.02325
[2026-01-10 13:37:51] 2026-01-10 18:37:17,948 | INFO     | mean x: 1768061006.513245
[2026-01-10 13:37:51] 2026-01-10 18:37:17,948 | INFO     | mean y: 3148778.619205298
[2026-01-10 13:37:51] 2026-01-10 18:37:17,948 | INFO     | intersect: -56861383660.877495
[2026-01-10 13:37:51] 2026-01-10 18:37:17,948 | INFO     | chi2: 3.4023414435737687
[2026-01-10 13:37:51] 2026-01-10 18:37:17,948 | INFO     | sum of square deviations: 8120995395.784562
[2026-01-10 13:37:51] 2026-01-10 18:37:17,950 | INFO     | sum of deviations: 334484635010.7474
[2026-01-10 13:37:51] 2026-01-10 18:37:17,950 | INFO     | mean x: 1768060854.026936
[2026-01-10 13:37:51] 2026-01-10 18:37:17,950 | INFO     | mean y: 3170519.6565656564
[2026-01-10 13:37:51] 2026-01-10 18:37:17,950 | INFO     | intersect: -72819083479.27657
[2026-01-10 13:37:51] 2026-01-10 18:37:17,950 | INFO     | chi2: 1.8644713449778436
[2026-01-10 13:37:51] 2026-01-10 18:37:17,950 | INFO     | current chi2=1.8644713449778436 (change=45.20034582362696 %)
[2026-01-10 13:37:51] 2026-01-10 18:37:17,950 | INFO     | sum of square deviations: 7717657962.506831
[2026-01-10 13:37:51] 2026-01-10 18:37:17,952 | INFO     | sum of deviations: 323244271321.13696
[2026-01-10 13:37:51] 2026-01-10 18:37:17,952 | INFO     | mean x: 1768060701.541096
[2026-01-10 13:37:51] 2026-01-10 18:37:17,952 | INFO     | mean y: 3166269.821917808
[2026-01-10 13:37:51] 2026-01-10 18:37:17,952 | INFO     | intersect: -74049803672.31212
[2026-01-10 13:37:51] 2026-01-10 18:37:17,952 | INFO     | chi2: 1.8610749535408455
[2026-01-10 13:37:51] 2026-01-10 18:37:17,952 | INFO     | current chi2=1.8610749535408455 (change=0.18216377774572148 %)
[2026-01-10 13:37:51] 2026-01-10 18:37:17,952 | INFO     | right removable region: 291
[2026-01-10 13:37:51] 2026-01-10 18:37:17,952 | INFO     | sum of square deviations: 8120863392.834976
[2026-01-10 13:37:51] 2026-01-10 18:37:17,954 | INFO     | sum of deviations: 197276812423.0842
[2026-01-10 13:37:51] 2026-01-10 18:37:17,954 | INFO     | mean x: 1768061159.023569
[2026-01-10 13:37:51] 2026-01-10 18:37:17,954 | INFO     | mean y: 3176892.845117845
[2026-01-10 13:37:51] 2026-01-10 18:37:17,954 | INFO     | intersect: -42947609587.4418
[2026-01-10 13:37:51] 2026-01-10 18:37:17,954 | INFO     | chi2: 1.6423800510886157
[2026-01-10 13:37:51] 2026-01-10 18:37:17,954 | INFO     | current chi2=1.6423800510886157 (change=51.72794740543488 %)
[2026-01-10 13:37:51] 2026-01-10 18:37:17,954 | INFO     | sum of square deviations: 7717503144.945262
[2026-01-10 13:37:51] 2026-01-10 18:37:17,956 | INFO     | sum of deviations: 175009725520.10278
[2026-01-10 13:37:51] 2026-01-10 18:37:17,956 | INFO     | mean x: 1768061311.5136986
[2026-01-10 13:37:51] 2026-01-10 18:37:17,956 | INFO     | mean y: 3185299.0993150687
[2026-01-10 13:37:51] 2026-01-10 18:37:17,956 | INFO     | intersect: -40091119687.791626
[2026-01-10 13:37:51] 2026-01-10 18:37:17,956 | INFO     | chi2: 1.6039624467186824
[2026-01-10 13:37:51] 2026-01-10 18:37:17,956 | INFO     | current chi2=1.6039624467186824 (change=2.3391421701980053 %)
[2026-01-10 13:37:51] 2026-01-10 18:37:17,956 | INFO     | left removable region: 20
[2026-01-10 13:37:51] 2026-01-10 18:37:17,956 | INFO     | sum of square deviations: 6169323717.631033
[2026-01-10 13:37:51] 2026-01-10 18:37:17,957 | INFO     | sum of deviations: 191840473836.25095
[2026-01-10 13:37:51] 2026-01-10 18:37:17,957 | INFO     | mean x: 1768061280.9630997
[2026-01-10 13:37:51] 2026-01-10 18:37:17,958 | INFO     | mean y: 3217591.225092251
[2026-01-10 13:37:51] 2026-01-10 18:37:17,958 | INFO     | intersect: -54976182005.2244
[2026-01-10 13:37:51] 2026-01-10 18:37:17,958 | INFO     | chi2: 0.034616967771128375
[2026-01-10 13:37:51] 2026-01-10 18:37:17,958 | INFO     | current memory leak: 31.10 B/s (using 271 data points, chi2=0.03)
[2026-01-10 13:37:51] 2026-01-10 18:37:17,958 | INFO     | could have reported an average CPU frequency of 3798 MHz (14 samples)
[2026-01-10 13:37:51] 2026-01-10 18:37:17,958 | INFO     | ..............................
[2026-01-10 13:37:51] 2026-01-10 18:37:17,958 | INFO     | . Timing measurements:
[2026-01-10 13:37:51] 2026-01-10 18:37:17,958 | INFO     | . get job = 0 s
[2026-01-10 13:37:51] 2026-01-10 18:37:17,958 | INFO     | . initial setup = 2 s
[2026-01-10 13:37:51] 2026-01-10 18:37:17,958 | INFO     | . payload setup = 6 s
[2026-01-10 13:37:51] 2026-01-10 18:37:17,959 | INFO     | . stage-in = 0 s
[2026-01-10 13:37:51] 2026-01-10 18:37:17,959 | INFO     | . payload execution = 18405 s
[2026-01-10 13:37:51] 2026-01-10 18:37:17,959 | INFO     | . stage-out = 2 s
[2026-01-10 13:37:51] 2026-01-10 18:37:17,959 | INFO     | . log creation = 0 s
[2026-01-10 13:37:51] 2026-01-10 18:37:17,959 | INFO     | ..............................
[2026-01-10 13:37:51] 2026-01-10 18:37:18,147 | INFO     | 
[2026-01-10 13:37:51] 2026-01-10 18:37:18,148 | INFO     | job summary report
[2026-01-10 13:37:51] 2026-01-10 18:37:18,148 | INFO     | --------------------------------------------------
[2026-01-10 13:37:51] 2026-01-10 18:37:18,148 | INFO     | PanDA job id: 6963383865
[2026-01-10 13:37:51] 2026-01-10 18:37:18,148 | INFO     | task id: 47962010
[2026-01-10 13:37:51] 2026-01-10 18:37:18,148 | INFO     | errors: (none)
[2026-01-10 13:37:51] 2026-01-10 18:37:18,148 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 13:37:51] 2026-01-10 18:37:18,148 | INFO     | pilot state: finished 
[2026-01-10 13:37:51] 2026-01-10 18:37:18,148 | INFO     | transexitcode: 0
[2026-01-10 13:37:51] 2026-01-10 18:37:18,148 | INFO     | exeerrorcode: 0
[2026-01-10 13:37:51] 2026-01-10 18:37:18,148 | INFO     | exeerrordiag: 
[2026-01-10 13:37:51] 2026-01-10 18:37:18,148 | INFO     | exitcode: 0
[2026-01-10 13:37:51] 2026-01-10 18:37:18,148 | INFO     | exitmsg: OK
[2026-01-10 13:37:51] 2026-01-10 18:37:18,148 | INFO     | cpuconsumptiontime: 143461 s
[2026-01-10 13:37:51] 2026-01-10 18:37:18,148 | INFO     | nevents: 900
[2026-01-10 13:37:51] 2026-01-10 18:37:18,148 | INFO     | neventsw: 0
[2026-01-10 13:37:51] 2026-01-10 18:37:18,148 | INFO     | pid: 2329192
[2026-01-10 13:37:51] 2026-01-10 18:37:18,148 | INFO     | pgrp: 2329192
[2026-01-10 13:37:51] 2026-01-10 18:37:18,148 | INFO     | corecount: 10
[2026-01-10 13:37:51] 2026-01-10 18:37:18,148 | INFO     | event service: False
[2026-01-10 13:37:51] 2026-01-10 18:37:18,148 | INFO     | sizes: {0: 2284397, 1: 2284652, 5: 2284914, 11: 2284970, 18416: 2318330, 18419: 2327508, 18426: 2327698}
[2026-01-10 13:37:51] 2026-01-10 18:37:18,149 | INFO     | --------------------------------------------------
[2026-01-10 13:37:51] 2026-01-10 18:37:18,149 | INFO     | 
[2026-01-10 13:37:51] 2026-01-10 18:37:18,149 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-10 13:37:51] 2026-01-10 18:37:18,169 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 13:37:51] 2026-01-10 18:37:18,170 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 13:37:51] 2026-01-10 18:37:18,170 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 13:37:51] 2026-01-10 18:37:18,170 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 13:37:51] 2026-01-10 18:37:18,170 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 13:37:51] 2026-01-10 18:37:18,170 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 13:37:51] 2026-01-10 18:37:18,170 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 13:37:51] 2026-01-10 18:37:18,170 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 13:37:51] 2026-01-10 18:37:18,170 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 13:37:51] 2026-01-10 18:37:18,170 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 13:37:51] 2026-01-10 18:37:18,170 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 13:37:51] 2026-01-10 18:37:18,170 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 13:37:51] 2026-01-10 18:37:18,170 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 13:37:51] 2026-01-10 18:37:18,170 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 13:37:51] 2026-01-10 18:37:18,170 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 13:37:51] 2026-01-10 18:37:18,170 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 13:37:51] 2026-01-10 18:37:18,170 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 13:37:51] 2026-01-10 18:37:18,170 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 13:37:51] 2026-01-10 18:37:18,171 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 13:37:51] 2026-01-10 18:37:18,171 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 13:37:51] 2026-01-10 18:37:18,171 | INFO     | job 6963383865 has completed (purged errors)
[2026-01-10 13:37:51] 2026-01-10 18:37:18,171 | INFO     | overall cleanup function is called
[2026-01-10 13:37:51] 2026-01-10 18:37:18,582 | INFO     | PID=2311311 has CPU usage=11.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-10 13:37:51] 2026-01-10 18:37:18,583 | INFO     | .. there are 38 such processes running
[2026-01-10 13:37:51] 2026-01-10 18:37:19,193 | INFO     | --- collectZombieJob: --- 10, [2329192]
[2026-01-10 13:37:51] 2026-01-10 18:37:19,194 | INFO     | zombie collector waiting for pid 2329192
[2026-01-10 13:37:51] 2026-01-10 18:37:19,194 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 13:37:51] 2026-01-10 18:37:19,194 | INFO     | collected zombie processes
[2026-01-10 13:37:51] 2026-01-10 18:37:19,194 | INFO     | will attempt to kill all subprocesses of pid=2329192
[2026-01-10 13:37:51] 2026-01-10 18:37:19,556 | INFO     | process IDs to be killed: [2329192] (in reverse order)
[2026-01-10 13:37:51] 2026-01-10 18:37:19,712 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 13:37:51] 2026-01-10 18:37:19,712 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 13:37:51] 2026-01-10 18:37:19,731 | INFO     | did not find any defunct processes belonging to 2329192
[2026-01-10 13:37:51] 2026-01-10 18:37:19,748 | INFO     | did not find any defunct processes belonging to 2329192
[2026-01-10 13:37:51] 2026-01-10 18:37:19,748 | INFO     | ready for new job
[2026-01-10 13:37:51] 2026-01-10 18:37:19,748 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 13:37:51] 2026-01-10 18:37:19,751 | INFO     | ***************************************
[2026-01-10 13:37:51] 2026-01-10 18:37:19,751 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 13:37:51] 2026-01-10 18:37:19,751 | INFO     | ***************************************
[2026-01-10 13:37:51] 2026-01-10 18:37:19,751 | INFO     | 
[2026-01-10 13:37:51] 2026-01-10 18:37:19,755 | INFO     | architecture information:
[2026-01-10 13:37:51] 2026-01-10 18:37:19,756 | INFO     | executing command: cat /etc/os-release
[2026-01-10 13:37:51] 2026-01-10 18:37:19,771 | INFO     | cat /etc/os-release:
[2026-01-10 13:37:51] NAME="CentOS Linux"
[2026-01-10 13:37:51] VERSION="7 (Core)"
[2026-01-10 13:37:51] ID="centos"
[2026-01-10 13:37:51] ID_LIKE="rhel fedora"
[2026-01-10 13:37:51] VERSION_ID="7"
[2026-01-10 13:37:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 13:37:51] ANSI_COLOR="0;31"
[2026-01-10 13:37:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 13:37:51] HOME_URL="https://www.centos.org/"
[2026-01-10 13:37:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 13:37:51] 
[2026-01-10 13:37:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 13:37:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 13:37:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 13:37:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 13:37:51] 
[2026-01-10 13:37:51] 2026-01-10 18:37:19,771 | INFO     | ***************************************
[2026-01-10 13:37:51] 2026-01-10 18:37:20,273 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-10 13:37:51] 2026-01-10 18:37:20,292 | INFO     | sufficient remaining disk space (75621203968 B)
[2026-01-10 13:37:51] 2026-01-10 18:37:20,292 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 13:37:51] 2026-01-10 18:37:20,292 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 13:37:51] 2026-01-10 18:37:20,292 | INFO     | update_server=False
[2026-01-10 13:37:51] 2026-01-10 18:37:20,292 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 13:37:51] 2026-01-10 18:37:20,292 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 13:37:51] 2026-01-10 18:37:20,292 | INFO     | aborting loop
[2026-01-10 13:37:51] 2026-01-10 18:37:20,385 | INFO     | all data control threads have been joined
[2026-01-10 13:37:51] 2026-01-10 18:37:20,487 | INFO     | all job control threads have been joined
[2026-01-10 13:37:51] 2026-01-10 18:37:21,297 | INFO     | [job] job monitor thread has finished
[2026-01-10 13:37:51] 2026-01-10 18:37:21,298 | INFO     | [job] retrieve thread has finished
[2026-01-10 13:37:51] 2026-01-10 18:37:21,387 | INFO     | [data] control thread has finished
[2026-01-10 13:37:51] 2026-01-10 18:37:21,410 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 13:37:51] 2026-01-10 18:37:21,492 | INFO     | [job] control thread has finished
[2026-01-10 13:37:51] 2026-01-10 18:37:21,498 | INFO     | [job] validate thread has finished
[2026-01-10 13:37:51] 2026-01-10 18:37:21,502 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 13:37:51] 2026-01-10 18:37:21,548 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 13:37:51] 2026-01-10 18:37:21,572 | INFO     | all payload control threads have been joined
[2026-01-10 13:37:51] 2026-01-10 18:37:22,204 | INFO     | [data] copytool_in thread has finished
[2026-01-10 13:37:51] 2026-01-10 18:37:22,225 | INFO     | [payload] validate_post thread has finished
[2026-01-10 13:37:51] 2026-01-10 18:37:22,287 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 13:37:51] 2026-01-10 18:37:22,470 | INFO     | [payload] failed_post thread has finished
[2026-01-10 13:37:51] 2026-01-10 18:37:22,577 | INFO     | [payload] control thread has finished
[2026-01-10 13:37:51] 2026-01-10 18:37:22,788 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 13:37:51] 2026-01-10 18:37:23,026 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 13:37:51] 2026-01-10 18:37:23,508 | INFO     | [data] copytool_out thread has finished
[2026-01-10 13:37:51] 2026-01-10 18:37:24,032 | INFO     | [job] queue monitor thread has finished
[2026-01-10 13:37:51] 2026-01-10 18:37:25,554 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 13:37:51] 2026-01-10 18:37:27,700 | INFO     | [monitor] cgroup control has ended
[2026-01-10 13:37:51] 2026-01-10 18:37:30,897 | INFO     | job.realtimelogging is not enabled
[2026-01-10 13:37:51] 2026-01-10 18:37:31,901 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 13:37:51] 2026-01-10 18:37:32,869 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140261067532096)>', '<ExcThread(monitor, started 140260210112256)>']
[2026-01-10 13:37:51] 2026-01-10 18:37:37,895 | INFO     | all workflow threads have been joined
[2026-01-10 13:37:51] 2026-01-10 18:37:37,895 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 13:37:51] 2026-01-10 18:37:37,896 | INFO     | traces error code: 0
[2026-01-10 13:37:51] 2026-01-10 18:37:37,896 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 13:37:51] 2026-01-10 18:37:51,058 | INFO     | PID=2311311 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 13:37:51] 2026-01-10 18:37:51,058 | INFO     | .. there are 38 such processes running
[2026-01-10 13:37:51] 2026-01-10 18:37:51,060 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 13:37:51] 2026-01-10 18:37:51,060 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 13:37:51] 2026-01-10 18:37:51,060 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 13:37:51] 2026-01-10 18:37:51,060 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 13:37:51] 2026-01-10 18:37:51,060 | INFO     | [monitor] control thread has ended
[2026-01-10 13:37:51] 2026-01-10 18:37:51,177 [wrapper] ==== pilot stdout END ====
[2026-01-10 13:37:51] 2026-01-10 18:37:51,181 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 13:37:51] 2026-01-10 18:37:51,184 [wrapper] pilotpid: 2311311
[2026-01-10 13:37:51] 2026-01-10 18:37:51,186 [wrapper] Pilot exit status: 0
[2026-01-10 13:37:51] 2026-01-10 18:37:51,201 [wrapper] pandaids: 6963383865
[2026-01-10 13:37:51] 2026-01-10 18:37:51,289 [wrapper] cleanup supervisor_pilot  653745 2311313
[2026-01-10 13:37:51] 2026-01-10 18:37:51,292 [wrapper] Test setup, not cleaning
[2026-01-10 13:37:51] 2026-01-10 18:37:51,295 [wrapper] apfmon messages muted
[2026-01-10 13:37:51] 2026-01-10 18:37:51,297 [wrapper] ==== wrapper stdout END ====
[2026-01-10 13:37:51] 2026-01-10 18:37:51,299 [wrapper] ==== wrapper stderr END ====
[2026-01-10 13:37:51]  *** Error codes and diagnostics ***
[2026-01-10 13:37:51]     "exeErrorCode": 0,
[2026-01-10 13:37:51]     "exeErrorDiag": "",
[2026-01-10 13:37:51]     "pilotErrorCode": 0,
[2026-01-10 13:37:51]     "pilotErrorDiag": "",
[2026-01-10 13:37:51]  *** Listing of results directory ***
[2026-01-10 13:37:51] total 1177596
[2026-01-10 13:37:51] -rwx------. 1 boincer umatlas     36322 Jan  9 02:17 runpilot2-wrapper.sh
[2026-01-10 13:37:51] -rw-r--r--. 1 boincer umatlas    579449 Jan  9 02:20 pilot3.tar.gz
[2026-01-10 13:37:51] -rw-r--r--. 1 boincer umatlas      5112 Jan  9 02:21 queuedata.json
[2026-01-10 13:37:51] -rw-r--r--. 1 boincer umatlas       100 Jan 10 08:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 13:37:51] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 08:29 run_atlas
[2026-01-10 13:37:51] -rw-r--r--. 1 boincer umatlas       105 Jan 10 08:29 job.xml
[2026-01-10 13:37:51] -rw-r--r--. 2 boincer umatlas 393354735 Jan 10 08:29 EVNT.47962006._000130.pool.root.1
[2026-01-10 13:37:51] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:29 start_atlas.sh
[2026-01-10 13:37:51] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 08:29 shared
[2026-01-10 13:37:51] -rw-r--r--. 2 boincer umatlas    592619 Jan 10 08:29 input.tar.gz
[2026-01-10 13:37:51] -rw-r--r--. 1 boincer umatlas         0 Jan 10 08:29 boinc_lockfile
[2026-01-10 13:37:51] -rw-r--r--. 1 boincer umatlas      2893 Jan 10 08:29 pandaJob.out
[2026-01-10 13:37:51] -rw-------. 1 boincer umatlas        57 Jan 10 08:29 setup.sh.local
[2026-01-10 13:37:51] -rw-------. 1 boincer umatlas    989556 Jan 10 08:29 agis_schedconf.cvmfs.json
[2026-01-10 13:37:51] drwx------. 5 boincer umatlas      4096 Jan 10 08:29 pilot3
[2026-01-10 13:37:51] -rw-r--r--. 1 boincer umatlas      7173 Jan 10 13:29 init_data.xml
[2026-01-10 13:37:51] -rw-r--r--. 1 boincer umatlas       532 Jan 10 13:32 boinc_task_state.xml
[2026-01-10 13:37:51] -rw-------. 1 boincer umatlas 799899980 Jan 10 13:36 HITS.47962010._001853.pool.root.1
[2026-01-10 13:37:51] -rw-------. 1 boincer umatlas      1048 Jan 10 13:37 memory_monitor_summary.json
[2026-01-10 13:37:51] -rw-------. 1 boincer umatlas   1516240 Jan 10 13:37 agis_ddmendpoints.agis.ALL.json
[2026-01-10 13:37:51] -rw-------. 1 boincer umatlas   1797802 Jan 10 13:37 log.47962010._001853.job.log.tgz.1
[2026-01-10 13:37:51] -rw-------. 1 boincer umatlas      8570 Jan 10 13:37 heartbeat.json
[2026-01-10 13:37:51] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 13:37 boinc_mmap_file
[2026-01-10 13:37:51] -rw-r--r--. 1 boincer umatlas        29 Jan 10 13:37 wrapper_checkpoint.txt
[2026-01-10 13:37:51] -rw-------. 1 boincer umatlas        95 Jan 10 13:37 pilot_heartbeat.json
[2026-01-10 13:37:51] -rw-------. 1 boincer umatlas       823 Jan 10 13:37 pilotlog.txt
[2026-01-10 13:37:51] -rw-------. 1 boincer umatlas   2548190 Jan 10 13:37 log.47962010._001853.job.log.1
[2026-01-10 13:37:51] -rw-------. 1 boincer umatlas       353 Jan 10 13:37 output.list
[2026-01-10 13:37:51] -rw-r--r--. 1 boincer umatlas       620 Jan 10 13:37 runtime_log
[2026-01-10 13:37:51] -rw-------. 1 boincer umatlas   4362240 Jan 10 13:37 result.tar.gz
[2026-01-10 13:37:51] -rw-r--r--. 1 boincer umatlas      9340 Jan 10 13:37 runtime_log.err
[2026-01-10 13:37:51] -rw-------. 1 boincer umatlas       658 Jan 10 13:37 34wKDmcvLy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmyRhKDmxaoDGo.diag
[2026-01-10 13:37:51] -rw-r--r--. 1 boincer umatlas     21269 Jan 10 13:37 stderr.txt
[2026-01-10 13:37:51] HITS file was successfully produced:
[2026-01-10 13:37:51] -rw-------. 1 boincer umatlas 799899980 Jan 10 13:36 shared/HITS.pool.root.1
[2026-01-10 13:37:51]  *** Contents of shared directory: ***
[2026-01-10 13:37:51] total 1170152
[2026-01-10 13:37:51] -rw-r--r--. 2 boincer umatlas 393354735 Jan 10 08:29 ATLAS.root_0
[2026-01-10 13:37:51] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:29 start_atlas.sh
[2026-01-10 13:37:51] -rw-r--r--. 2 boincer umatlas    592619 Jan 10 08:29 input.tar.gz
[2026-01-10 13:37:51] -rw-------. 1 boincer umatlas 799899980 Jan 10 13:36 HITS.pool.root.1
[2026-01-10 13:37:51] -rw-------. 1 boincer umatlas   4362240 Jan 10 13:37 result.tar.gz
13:37:52 (2303592): run_atlas exited; CPU time 143488.072552
13:37:52 (2303592): called boinc_finish(0)

</stderr_txt>
]]>

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