Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:13:58 (3855678): wrapper (7.7.26015): starting
17:13:58 (3855678): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 17:13:58] Arguments: --nthreads 3
[2026-01-10 17:13:58] Threads: 3
[2026-01-10 17:13:58] Checking for CVMFS
[2026-01-10 17:13:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 17:13:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 17:13:59] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 17:13:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 17:13:59] 2.9.2.0 2900183 3898 86904 154985 2 56 21346693 36864001 0 130560 0 2417184 99.988 142843 3378 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 17:13:59] CVMFS is ok
[2026-01-10 17:13:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 17:13:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 17:13:59] Further information can be found at the LHC@home message board.
[2026-01-10 17:13:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 17:13:59] Checking for apptainer binary...
[2026-01-10 17:13:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 17:13:59] Running /usr/bin/apptainer --version
[2026-01-10 17:13:59] apptainer version 1.4.1-1.1
[2026-01-10 17:13:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 17:13:59] thA312a
[2026-01-10 17:13:59] apptainer works
[2026-01-10 17:13:59] Set ATHENA_PROC_NUMBER=3
[2026-01-10 17:13:59] Set ATHENA_CORE_NUMBER=3
[2026-01-10 17:13:59] Starting ATLAS job with PandaID=6965383334
[2026-01-10 17:13:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 19:07:17]  *** The last 200 lines of the pilot log: ***
[2026-01-10 19:07:17] 2026-01-10 18:06:39,203 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 19:07:17] 2026-01-10 18:06:39,203 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 19:07:17] 2026-01-10 18:06:39,205 | INFO     | did not find any defunct processes belonging to 3865856
[2026-01-10 19:07:17] 2026-01-10 18:06:39,206 | INFO     | did not find any defunct processes belonging to 3865856
[2026-01-10 19:07:17] 2026-01-10 18:06:39,206 | INFO     | ready for new job
[2026-01-10 19:07:17] 2026-01-10 18:06:39,206 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 19:07:17] 2026-01-10 18:06:39,207 | INFO     | ***************************************
[2026-01-10 19:07:17] 2026-01-10 18:06:39,207 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 19:07:17] 2026-01-10 18:06:39,207 | INFO     | ***************************************
[2026-01-10 19:07:17] 2026-01-10 18:06:39,207 | INFO     | 
[2026-01-10 19:07:17] 2026-01-10 18:06:39,207 | INFO     | architecture information:
[2026-01-10 19:07:17] 2026-01-10 18:06:39,207 | INFO     | executing command: cat /etc/os-release
[2026-01-10 19:07:17] 2026-01-10 18:06:39,217 | INFO     | cat /etc/os-release:
[2026-01-10 19:07:17] NAME="CentOS Linux"
[2026-01-10 19:07:17] VERSION="7 (Core)"
[2026-01-10 19:07:17] ID="centos"
[2026-01-10 19:07:17] ID_LIKE="rhel fedora"
[2026-01-10 19:07:17] VERSION_ID="7"
[2026-01-10 19:07:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 19:07:17] ANSI_COLOR="0;31"
[2026-01-10 19:07:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 19:07:17] HOME_URL="https://www.centos.org/"
[2026-01-10 19:07:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 19:07:17] 
[2026-01-10 19:07:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 19:07:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 19:07:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 19:07:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 19:07:17] 
[2026-01-10 19:07:17] 2026-01-10 18:06:39,218 | INFO     | ***************************************
[2026-01-10 19:07:17] 2026-01-10 18:06:39,721 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 19:07:17] 2026-01-10 18:06:39,735 | INFO     | sufficient remaining disk space (284700966912 B)
[2026-01-10 19:07:17] 2026-01-10 18:06:39,735 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 19:07:17] 2026-01-10 18:06:39,735 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 19:07:17] 2026-01-10 18:06:39,735 | INFO     | update_server=False
[2026-01-10 19:07:17] 2026-01-10 18:06:39,735 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 19:07:17] 2026-01-10 18:06:39,736 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 19:07:17] 2026-01-10 18:06:39,736 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 19:07:17] 2026-01-10 18:06:39,808 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 19:07:17] 2026-01-10 18:06:39,808 | INFO     | aborting loop
[2026-01-10 19:07:17] 2026-01-10 18:06:39,821 | INFO     | all payload control threads have been joined
[2026-01-10 19:07:17] 2026-01-10 18:06:40,013 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 19:07:17] 2026-01-10 18:06:40,686 | INFO     | all data control threads have been joined
[2026-01-10 19:07:17] 2026-01-10 18:06:40,690 | INFO     | all job control threads have been joined
[2026-01-10 19:07:17] 2026-01-10 18:06:40,740 | INFO     | [job] queue monitor thread has finished
[2026-01-10 19:07:17] 2026-01-10 18:06:40,741 | INFO     | [job] retrieve thread has finished
[2026-01-10 19:07:17] 2026-01-10 18:06:40,751 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 19:07:17] 2026-01-10 18:06:40,813 | INFO     | [job] job monitor thread has finished
[2026-01-10 19:07:17] 2026-01-10 18:06:40,826 | INFO     | [payload] control thread has finished
[2026-01-10 19:07:17] 2026-01-10 18:06:41,410 | INFO     | [payload] failed_post thread has finished
[2026-01-10 19:07:17] 2026-01-10 18:06:41,680 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 19:07:17] 2026-01-10 18:06:41,691 | INFO     | [data] control thread has finished
[2026-01-10 19:07:17] 2026-01-10 18:06:41,696 | INFO     | [job] control thread has finished
[2026-01-10 19:07:17] 2026-01-10 18:06:41,907 | INFO     | [data] copytool_in thread has finished
[2026-01-10 19:07:17] 2026-01-10 18:06:42,019 | INFO     | [data] copytool_out thread has finished
[2026-01-10 19:07:17] 2026-01-10 18:06:42,121 | INFO     | [job] validate thread has finished
[2026-01-10 19:07:17] 2026-01-10 18:06:42,241 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 19:07:17] 2026-01-10 18:06:42,312 | INFO     | [payload] validate_post thread has finished
[2026-01-10 19:07:17] 2026-01-10 18:06:43,743 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 19:07:17] 2026-01-10 18:06:50,547 | INFO     | job.realtimelogging is not enabled
[2026-01-10 19:07:17] 2026-01-10 18:06:51,553 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 19:07:17] 2026-01-10 18:07:09,289 | INFO     | PID=3859407 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 19:07:17] 2026-01-10 18:07:09,290 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 19:07:17] 2026-01-10 18:07:09,290 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 19:07:17] 2026-01-10 18:07:09,290 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 19:07:17] 2026-01-10 18:07:12,048 | INFO     | [monitor] cgroup control has ended
[2026-01-10 19:07:17] 2026-01-10 18:07:12,516 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139929401730880)>', '<ExcThread(monitor, started 139928507750144)>']
[2026-01-10 19:07:17] 2026-01-10 18:07:13,312 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 19:07:17] 2026-01-10 18:07:13,312 | INFO     | [monitor] control thread has ended
[2026-01-10 19:07:17] 2026-01-10 18:07:17,542 | INFO     | all workflow threads have been joined
[2026-01-10 19:07:17] 2026-01-10 18:07:17,542 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 19:07:17] 2026-01-10 18:07:17,542 | INFO     | traces error code: 0
[2026-01-10 19:07:17] 2026-01-10 18:07:17,542 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 19:07:17] 2026-01-10 18:07:17,593 [wrapper] ==== pilot stdout END ====
[2026-01-10 19:07:17] 2026-01-10 18:07:17,596 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 19:07:17] 2026-01-10 18:07:17,599 [wrapper] pilotpid: 3859407
[2026-01-10 19:07:17] 2026-01-10 18:07:17,601 [wrapper] Pilot exit status: 0
[2026-01-10 19:07:17] 2026-01-10 18:07:17,609 [wrapper] pandaids: 6965383334
[2026-01-10 19:07:17] 2026-01-10 18:07:17,628 [wrapper] cleanup supervisor_pilot 3886461 3859408
[2026-01-10 19:07:17] 2026-01-10 18:07:17,630 [wrapper] Test setup, not cleaning
[2026-01-10 19:07:17] 2026-01-10 18:07:17,633 [wrapper] apfmon messages muted
[2026-01-10 19:07:17] 2026-01-10 18:07:17,635 [wrapper] ==== wrapper stdout END ====
[2026-01-10 19:07:17] 2026-01-10 18:07:17,638 [wrapper] ==== wrapper stderr END ====
[2026-01-10 19:07:17]  *** Error codes and diagnostics ***
[2026-01-10 19:07:17]     "exeErrorCode": 0,
[2026-01-10 19:07:17]     "exeErrorDiag": "",
[2026-01-10 19:07:17]     "pilotErrorCode": 0,
[2026-01-10 19:07:17]     "pilotErrorDiag": "",
[2026-01-10 19:07:17]  *** Listing of results directory ***
[2026-01-10 19:07:17] total 436496
[2026-01-10 19:07:17] -rw-r--r-- 1 boinc boinc      5112 Jan 10 14:09 queuedata.json
[2026-01-10 19:07:17] -rw-r--r-- 1 boinc boinc    579449 Jan 10 14:09 pilot3.tar.gz
[2026-01-10 19:07:17] -rwx------ 1 boinc boinc     36322 Jan 10 14:10 runpilot2-wrapper.sh
[2026-01-10 19:07:17] -rw-r--r-- 1 boinc boinc       100 Jan 10 17:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 19:07:17] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 17:13 run_atlas
[2026-01-10 19:07:17] -rw-r--r-- 1 boinc boinc       105 Jan 10 17:13 job.xml
[2026-01-10 19:07:17] -rw-r--r-- 2 boinc boinc 225387711 Jan 10 17:13 EVNT.47898824._001353.pool.root.1
[2026-01-10 19:07:17] -rw-r--r-- 2 boinc boinc    592402 Jan 10 17:13 input.tar.gz
[2026-01-10 19:07:17] -rw-r--r-- 2 boinc boinc     15847 Jan 10 17:13 start_atlas.sh
[2026-01-10 19:07:17] drwxrwx--x 2 boinc boinc      4096 Jan 10 17:13 shared
[2026-01-10 19:07:17] -rw-r--r-- 1 boinc boinc         0 Jan 10 17:13 boinc_setup_complete
[2026-01-10 19:07:17] -rw-r--r-- 1 boinc boinc      6447 Jan 10 17:13 init_data.xml
[2026-01-10 19:07:17] -rw-r--r-- 1 boinc boinc         0 Jan 10 17:13 boinc_lockfile
[2026-01-10 19:07:17] -rw-r--r-- 1 boinc boinc      2518 Jan 10 17:13 pandaJob.out
[2026-01-10 19:07:17] -rw------- 1 boinc boinc    989556 Jan 10 17:14 agis_schedconf.cvmfs.json
[2026-01-10 19:07:17] -rw------- 1 boinc boinc   1516240 Jan 10 17:14 agis_ddmendpoints.agis.ALL.json
[2026-01-10 19:07:17] drwx------ 5 boinc boinc      4096 Jan 10 17:14 pilot3
[2026-01-10 19:07:17] -rw------- 1 boinc boinc 215195141 Jan 10 19:06 HITS.47898826._040474.pool.root.1
[2026-01-10 19:07:17] -rw-r--r-- 1 boinc boinc       529 Jan 10 19:06 boinc_task_state.xml
[2026-01-10 19:07:17] -rw------- 1 boinc boinc      1028 Jan 10 19:06 memory_monitor_summary.json
[2026-01-10 19:07:17] -rw------- 1 boinc boinc    268833 Jan 10 19:06 log.47898826._040474.job.log.tgz.1
[2026-01-10 19:07:17] -rw------- 1 boinc boinc      7748 Jan 10 19:06 heartbeat.json
[2026-01-10 19:07:17] -rw------- 1 boinc boinc        95 Jan 10 19:07 pilot_heartbeat.json
[2026-01-10 19:07:17] -rw-r--r-- 1 boinc boinc        27 Jan 10 19:07 wrapper_checkpoint.txt
[2026-01-10 19:07:17] -rw------- 1 boinc boinc      4824 Jan 10 19:07 pilotlog.txt
[2026-01-10 19:07:17] -rw------- 1 boinc boinc    975094 Jan 10 19:07 log.47898826._040474.job.log.1
[2026-01-10 19:07:17] -rw------- 1 boinc boinc       357 Jan 10 19:07 output.list
[2026-01-10 19:07:17] -rw-r--r-- 1 boinc boinc       620 Jan 10 19:07 runtime_log
[2026-01-10 19:07:17] -rw------- 1 boinc boinc   1259520 Jan 10 19:07 result.tar.gz
[2026-01-10 19:07:17] -rw-r--r-- 1 boinc boinc      8902 Jan 10 19:07 runtime_log.err
[2026-01-10 19:07:17] -rw------- 1 boinc boinc       660 Jan 10 19:07 P1mKDmguny8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmnkmKDm3iUwlm.diag
[2026-01-10 19:07:17] -rw-r--r-- 1 boinc boinc      8192 Jan 10 19:07 boinc_mmap_file
[2026-01-10 19:07:17] -rw-r--r-- 1 boinc boinc     10065 Jan 10 19:07 stderr.txt
[2026-01-10 19:07:17] HITS file was successfully produced:
[2026-01-10 19:07:17] -rw------- 1 boinc boinc 215195141 Jan 10 19:06 shared/HITS.pool.root.1
[2026-01-10 19:07:17]  *** Contents of shared directory: ***
[2026-01-10 19:07:17] total 432096
[2026-01-10 19:07:17] -rw-r--r-- 2 boinc boinc 225387711 Jan 10 17:13 ATLAS.root_0
[2026-01-10 19:07:17] -rw-r--r-- 2 boinc boinc    592402 Jan 10 17:13 input.tar.gz
[2026-01-10 19:07:17] -rw-r--r-- 2 boinc boinc     15847 Jan 10 17:13 start_atlas.sh
[2026-01-10 19:07:17] -rw------- 1 boinc boinc 215195141 Jan 10 19:06 HITS.pool.root.1
[2026-01-10 19:07:17] -rw------- 1 boinc boinc   1259520 Jan 10 19:07 result.tar.gz
19:07:20 (3855678): run_atlas exited; CPU time 19539.879071
19:07:20 (3855678): called boinc_finish(0)

</stderr_txt>
]]>

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