Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
13:06:49 (2122553): wrapper (7.7.26015): starting
13:06:49 (2122553): wrapper: running run_atlas (--nthreads 12)
[2026-01-11 13:06:49] Arguments: --nthreads 12
[2026-01-11 13:06:49] Threads: 12
[2026-01-11 13:06:49] Checking for CVMFS
[2026-01-11 13:06:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 13:06:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 13:06:50] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 13:06:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 13:06:51] 2.13.3.0 40677 3314 55376 155017 2 131 3271438 4096000 11082 130560 0 17766997 99.970 337610 273 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-11 13:06:51] CVMFS is ok
[2026-01-11 13:06:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 13:06:51] Checking for apptainer binary...
[2026-01-11 13:06:51] apptainer is not installed, using version from CVMFS
[2026-01-11 13:06:51] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 13:06:53] epyc7v12
[2026-01-11 13:06:53] apptainer works
[2026-01-11 13:06:54] Set ATHENA_PROC_NUMBER=12
[2026-01-11 13:06:54] Set ATHENA_CORE_NUMBER=12
[2026-01-11 13:06:54] Starting ATLAS job with PandaID=6965383923
[2026-01-11 13:06:54] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 14:11:43]  *** The last 200 lines of the pilot log: ***
[2026-01-11 14:11:43] 2026-01-11 14:10:45,273 | INFO     | summary of transferred files:
[2026-01-11 14:11:43] 2026-01-11 14:10:45,273 | INFO     |  -- lfn=log.47962010._002064.job.log.tgz.1, status_code=0, status=transferred
[2026-01-11 14:11:43] 2026-01-11 14:10:45,274 | INFO     | stage-out finished correctly
[2026-01-11 14:11:43] 2026-01-11 14:10:46,378 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-11 14:11:43] 2026-01-11 14:10:46,501 | INFO     | monitor loop #255: job 0:6965383923 is in state 'finished'
[2026-01-11 14:11:43] 2026-01-11 14:10:46,520 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 14:11:43] 2026-01-11 14:10:46,864 | INFO     | time since job start (3796s) is within the limit (349056.0s)
[2026-01-11 14:11:43] 2026-01-11 14:10:48,875 | INFO     | time since job start (3798s) is within the limit (349056.0s)
[2026-01-11 14:11:43] 2026-01-11 14:10:49,027 | INFO     | monitor loop #256: job 0:6965383923 is in state 'finished'
[2026-01-11 14:11:43] 2026-01-11 14:10:49,027 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 14:11:43] 2026-01-11 14:10:49,193 | INFO     | job 6965383923 has state=finished
[2026-01-11 14:11:43] 2026-01-11 14:10:49,194 | INFO     | preparing for final server update for job 6965383923 in state='finished'
[2026-01-11 14:11:43] 2026-01-11 14:10:49,194 | INFO     | this job has now completed (state=finished)
[2026-01-11 14:11:43] 2026-01-11 14:10:49,194 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-11 14:11:43] 2026-01-11 14:10:49,195 | INFO     | log transfer has been attempted: DONE
[2026-01-11 14:11:43] 2026-01-11 14:10:49,195 | INFO     | job 6965383923 has finished - writing final server update
[2026-01-11 14:11:43] 2026-01-11 14:10:49,199 | INFO     | total number of processed events: 50 (read)
[2026-01-11 14:11:43] 2026-01-11 14:10:49,200 | INFO     | executing command: lscpu
[2026-01-11 14:11:43] 2026-01-11 14:10:49,338 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 14:11:43] 2026-01-11 14:10:50,885 | INFO     | time since job start (3800s) is within the limit (349056.0s)
[2026-01-11 14:11:43] 2026-01-11 14:10:51,532 | INFO     | monitor loop #257: job 0:6965383923 is in state 'finished'
[2026-01-11 14:11:43] 2026-01-11 14:10:51,532 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 14:11:43] 2026-01-11 14:10:52,897 | INFO     | time since job start (3802s) is within the limit (349056.0s)
[2026-01-11 14:11:43] 2026-01-11 14:10:54,037 | INFO     | monitor loop #258: job 0:6965383923 is in state 'finished'
[2026-01-11 14:11:43] 2026-01-11 14:10:54,037 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 14:11:43] 2026-01-11 14:10:54,902 | INFO     | time since job start (3804s) is within the limit (349056.0s)
[2026-01-11 14:11:43] 2026-01-11 14:10:56,542 | INFO     | monitor loop #259: job 0:6965383923 is in state 'finished'
[2026-01-11 14:11:43] 2026-01-11 14:10:56,542 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 14:11:43] 2026-01-11 14:10:56,913 | INFO     | time since job start (3806s) is within the limit (349056.0s)
[2026-01-11 14:11:43] 2026-01-11 14:10:58,932 | INFO     | time since job start (3808s) is within the limit (349056.0s)
[2026-01-11 14:11:43] 2026-01-11 14:10:59,045 | INFO     | monitor loop #260: job 0:6965383923 is in state 'finished'
[2026-01-11 14:11:43] 2026-01-11 14:10:59,045 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 14:11:43] 2026-01-11 14:11:00,950 | INFO     | time since job start (3810s) is within the limit (349056.0s)
[2026-01-11 14:11:43] 2026-01-11 14:11:01,563 | INFO     | monitor loop #261: job 0:6965383923 is in state 'finished'
[2026-01-11 14:11:43] 2026-01-11 14:11:01,563 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 14:11:43] 2026-01-11 14:11:03,491 | INFO     | PID=2129085 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 14:11:43] 2026-01-11 14:11:03,497 | INFO     | .. there are 12 such processes running
[2026-01-11 14:11:43] 2026-01-11 14:11:04,067 | INFO     | monitor loop #262: job 0:6965383923 is in state 'finished'
[2026-01-11 14:11:43] 2026-01-11 14:11:04,067 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 14:11:43] 2026-01-11 14:11:04,499 | INFO     | time since job start (3814s) is within the limit (349056.0s)
[2026-01-11 14:11:43] 2026-01-11 14:11:05,606 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-11 14:11:43] 2026-01-11 14:11:05,649 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2500.5709765624993
[2026-01-11 14:11:43] 2026-01-11 14:11:05,715 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6965383923/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 14:11:43] 2026-01-11 14:11:05,716 | INFO     | extracted standard info from prmon json
[2026-01-11 14:11:43] 2026-01-11 14:11:05,716 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 14:11:43] 2026-01-11 14:11:05,716 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 14:11:43] 2026-01-11 14:11:05,722 | INFO     | fitting pss+swap vs Time
[2026-01-11 14:11:43] 2026-01-11 14:11:05,723 | INFO     | sum of square deviations: 48759575.9259259
[2026-01-11 14:11:43] 2026-01-11 14:11:05,723 | INFO     | sum of deviations: -7848428153.814814
[2026-01-11 14:11:43] 2026-01-11 14:11:05,723 | INFO     | mean x: 1768138854.0370371
[2026-01-11 14:11:43] 2026-01-11 14:11:05,723 | INFO     | mean y: 2634820.407407407
[2026-01-11 14:11:43] 2026-01-11 14:11:05,723 | INFO     | intersect: 284605412805.1839
[2026-01-11 14:11:43] 2026-01-11 14:11:05,723 | INFO     | chi2: 2.359483172854005
[2026-01-11 14:11:43] 2026-01-11 14:11:05,724 | INFO     | current memory leak: -160.96 B/s (using 54 data points, chi2=2.36)
[2026-01-11 14:11:43] 2026-01-11 14:11:05,724 | INFO     | could have reported an average CPU frequency of 2514 MHz (6 samples)
[2026-01-11 14:11:43] 2026-01-11 14:11:05,724 | INFO     | ..............................
[2026-01-11 14:11:43] 2026-01-11 14:11:05,724 | INFO     | . Timing measurements:
[2026-01-11 14:11:43] 2026-01-11 14:11:05,724 | INFO     | . get job = 0 s
[2026-01-11 14:11:43] 2026-01-11 14:11:05,724 | INFO     | . initial setup = 3 s
[2026-01-11 14:11:43] 2026-01-11 14:11:05,724 | INFO     | . payload setup = 21 s
[2026-01-11 14:11:43] 2026-01-11 14:11:05,725 | INFO     | . stage-in = 0 s
[2026-01-11 14:11:43] 2026-01-11 14:11:05,725 | INFO     | . payload execution = 3725 s
[2026-01-11 14:11:43] 2026-01-11 14:11:05,725 | INFO     | . stage-out = 2 s
[2026-01-11 14:11:43] 2026-01-11 14:11:05,725 | INFO     | . log creation = 0 s
[2026-01-11 14:11:43] 2026-01-11 14:11:05,725 | INFO     | ..............................
[2026-01-11 14:11:43] 2026-01-11 14:11:05,959 | INFO     | 
[2026-01-11 14:11:43] 2026-01-11 14:11:05,959 | INFO     | job summary report
[2026-01-11 14:11:43] 2026-01-11 14:11:05,959 | INFO     | --------------------------------------------------
[2026-01-11 14:11:43] 2026-01-11 14:11:05,959 | INFO     | PanDA job id: 6965383923
[2026-01-11 14:11:43] 2026-01-11 14:11:05,960 | INFO     | task id: 47962010
[2026-01-11 14:11:43] 2026-01-11 14:11:05,960 | INFO     | errors: (none)
[2026-01-11 14:11:43] 2026-01-11 14:11:05,960 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 14:11:43] 2026-01-11 14:11:05,960 | INFO     | pilot state: finished 
[2026-01-11 14:11:43] 2026-01-11 14:11:05,960 | INFO     | transexitcode: 0
[2026-01-11 14:11:43] 2026-01-11 14:11:05,960 | INFO     | exeerrorcode: 0
[2026-01-11 14:11:43] 2026-01-11 14:11:05,960 | INFO     | exeerrordiag: 
[2026-01-11 14:11:43] 2026-01-11 14:11:05,960 | INFO     | exitcode: 0
[2026-01-11 14:11:43] 2026-01-11 14:11:05,960 | INFO     | exitmsg: OK
[2026-01-11 14:11:43] 2026-01-11 14:11:05,960 | INFO     | cpuconsumptiontime: 16391 s
[2026-01-11 14:11:43] 2026-01-11 14:11:05,960 | INFO     | nevents: 50
[2026-01-11 14:11:43] 2026-01-11 14:11:05,960 | INFO     | neventsw: 0
[2026-01-11 14:11:43] 2026-01-11 14:11:05,960 | INFO     | pid: 2136410
[2026-01-11 14:11:43] 2026-01-11 14:11:05,960 | INFO     | pgrp: 2136410
[2026-01-11 14:11:43] 2026-01-11 14:11:05,960 | INFO     | corecount: 12
[2026-01-11 14:11:43] 2026-01-11 14:11:05,961 | INFO     | event service: False
[2026-01-11 14:11:43] 2026-01-11 14:11:05,961 | INFO     | sizes: {0: 2284365, 1: 2284449, 2: 2284648, 12: 2284648, 20: 2284938, 23: 2284966, 3750: 2311662, 3753: 2320702, 3754: 2320758, 3773: 2321004}
[2026-01-11 14:11:43] 2026-01-11 14:11:05,961 | INFO     | --------------------------------------------------
[2026-01-11 14:11:43] 2026-01-11 14:11:05,961 | INFO     | 
[2026-01-11 14:11:43] 2026-01-11 14:11:05,961 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/2
[2026-01-11 14:11:43] 2026-01-11 14:11:06,035 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 14:11:43] 2026-01-11 14:11:06,036 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 14:11:43] 2026-01-11 14:11:06,036 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 14:11:43] 2026-01-11 14:11:06,036 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 14:11:43] 2026-01-11 14:11:06,036 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 14:11:43] 2026-01-11 14:11:06,036 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 14:11:43] 2026-01-11 14:11:06,037 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 14:11:43] 2026-01-11 14:11:06,037 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 14:11:43] 2026-01-11 14:11:06,037 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 14:11:43] 2026-01-11 14:11:06,037 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 14:11:43] 2026-01-11 14:11:06,037 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 14:11:43] 2026-01-11 14:11:06,037 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 14:11:43] 2026-01-11 14:11:06,037 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 14:11:43] 2026-01-11 14:11:06,037 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 14:11:43] 2026-01-11 14:11:06,037 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 14:11:43] 2026-01-11 14:11:06,037 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 14:11:43] 2026-01-11 14:11:06,037 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 14:11:43] 2026-01-11 14:11:06,037 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 14:11:43] 2026-01-11 14:11:06,037 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 14:11:43] 2026-01-11 14:11:06,038 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 14:11:43] 2026-01-11 14:11:06,038 | INFO     | job 6965383923 has completed (purged errors)
[2026-01-11 14:11:43] 2026-01-11 14:11:06,038 | INFO     | overall cleanup function is called
[2026-01-11 14:11:43] 2026-01-11 14:11:07,081 | INFO     | --- collectZombieJob: --- 10, [2136410]
[2026-01-11 14:11:43] 2026-01-11 14:11:07,081 | INFO     | zombie collector waiting for pid 2136410
[2026-01-11 14:11:43] 2026-01-11 14:11:07,081 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 14:11:43] 2026-01-11 14:11:07,081 | INFO     | collected zombie processes
[2026-01-11 14:11:43] 2026-01-11 14:11:07,082 | INFO     | will attempt to kill all subprocesses of pid=2136410
[2026-01-11 14:11:43] 2026-01-11 14:11:08,348 | INFO     | process IDs to be killed: [2136410] (in reverse order)
[2026-01-11 14:11:43] 2026-01-11 14:11:08,958 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 14:11:43] 2026-01-11 14:11:08,959 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 14:11:43] 2026-01-11 14:11:08,994 | INFO     | did not find any defunct processes belonging to 2136410
[2026-01-11 14:11:43] 2026-01-11 14:11:09,032 | INFO     | did not find any defunct processes belonging to 2136410
[2026-01-11 14:11:43] 2026-01-11 14:11:09,032 | INFO     | ready for new job
[2026-01-11 14:11:43] 2026-01-11 14:11:09,033 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 14:11:43] 2026-01-11 14:11:09,034 | INFO     | ***************************************
[2026-01-11 14:11:43] 2026-01-11 14:11:09,035 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 14:11:43] 2026-01-11 14:11:09,035 | INFO     | ***************************************
[2026-01-11 14:11:43] 2026-01-11 14:11:09,035 | INFO     | 
[2026-01-11 14:11:43] 2026-01-11 14:11:09,056 | INFO     | architecture information:
[2026-01-11 14:11:43] 2026-01-11 14:11:09,057 | INFO     | executing command: cat /etc/os-release
[2026-01-11 14:11:43] 2026-01-11 14:11:09,170 | INFO     | cat /etc/os-release:
[2026-01-11 14:11:43] NAME="CentOS Linux"
[2026-01-11 14:11:43] VERSION="7 (Core)"
[2026-01-11 14:11:43] ID="centos"
[2026-01-11 14:11:43] ID_LIKE="rhel fedora"
[2026-01-11 14:11:43] VERSION_ID="7"
[2026-01-11 14:11:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 14:11:43] ANSI_COLOR="0;31"
[2026-01-11 14:11:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 14:11:43] HOME_URL="https://www.centos.org/"
[2026-01-11 14:11:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 14:11:43] 
[2026-01-11 14:11:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 14:11:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 14:11:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 14:11:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 14:11:43] 
[2026-01-11 14:11:43] 2026-01-11 14:11:09,171 | INFO     | ***************************************
[2026-01-11 14:11:43] 2026-01-11 14:11:09,673 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/2
[2026-01-11 14:11:43] 2026-01-11 14:11:09,752 | INFO     | sufficient remaining disk space (370374868992 B)
[2026-01-11 14:11:43] 2026-01-11 14:11:09,752 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 14:11:43] 2026-01-11 14:11:09,752 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 14:11:43] 2026-01-11 14:11:09,753 | INFO     | update_server=False
[2026-01-11 14:11:43] 2026-01-11 14:11:09,753 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 14:11:43] 2026-01-11 14:11:10,083 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 14:11:43] 2026-01-11 14:11:10,083 | INFO     | aborting loop
[2026-01-11 14:11:43] 2026-01-11 14:11:10,187 | INFO     | all data control threads have been joined
[2026-01-11 14:11:43] 2026-01-11 14:11:10,298 | INFO     | all job control threads have been joined
[2026-01-11 14:11:43] 2026-01-11 14:11:10,670 | INFO     | all payload control threads have been joined
[2026-01-11 14:11:43] 2026-01-11 14:11:10,711 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 14:11:43] 2026-01-11 14:11:10,759 | INFO     | [job] retrieve thread has finished
[2026-01-11 14:11:43] 2026-01-11 14:11:10,977 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 14:11:43] 2026-01-11 14:11:11,079 | INFO     | [job] validate thread has finished
[2026-01-11 14:11:43] 2026-01-11 14:11:11,082 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 14:11:43] 2026-01-11 14:11:11,090 | INFO     | [job] job monitor thread has finished
[2026-01-11 14:11:43] 2026-01-11 14:11:11,105 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 14:11:43] 2026-01-11 14:11:11,197 | INFO     | [data] control thread has finished
[2026-01-11 14:11:43] 2026-01-11 14:11:11,303 | INFO     | [job] control thread has finished
[2026-01-11 14:11:43] 2026-01-11 14:11:11,437 | INFO     | [payload] validate_post thread has finished
[2026-01-11 14:11:43] 2026-01-11 14:11:11,450 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 14:11:43] 2026-01-11 14:11:11,577 | INFO     | [payload] failed_post thread has finished
[2026-01-11 14:11:43] 2026-01-11 14:11:11,677 | INFO     | [payload] control thread has finished
[2026-01-11 14:11:43] 2026-01-11 14:11:11,692 | INFO     | [data] copytool_in thread has finished
[2026-01-11 14:11:43] 2026-01-11 14:11:11,716 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 14:11:43] 2026-01-11 14:11:11,810 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 14:11:43] 2026-01-11 14:11:11,993 | INFO     | [job] queue monitor thread has finished
[2026-01-11 14:11:43] 2026-01-11 14:11:13,110 | INFO     | [data] copytool_out thread has finished
[2026-01-11 14:11:43] 2026-01-11 14:11:14,723 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 14:11:43] 2026-01-11 14:11:36,335 | INFO     | [monitor] cgroup control has ended
[2026-01-11 14:11:43] 2026-01-11 14:11:36,867 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 136766686771008)>', '<ExcThread(monitor, started 136766145144576)>']
[2026-01-11 14:11:43] 2026-01-11 14:11:39,206 | INFO     | PID=2129085 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 14:11:43] 2026-01-11 14:11:39,206 | INFO     | .. there are 12 such processes running
[2026-01-11 14:11:43] 2026-01-11 14:11:39,207 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 14:11:43] 2026-01-11 14:11:39,207 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 14:11:43] 2026-01-11 14:11:39,207 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 14:11:43] 2026-01-11 14:11:39,207 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 14:11:43] 2026-01-11 14:11:39,207 | INFO     | [monitor] control thread has ended
[2026-01-11 14:11:43] 2026-01-11 14:11:41,892 | INFO     | all workflow threads have been joined
[2026-01-11 14:11:43] 2026-01-11 14:11:41,892 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 14:11:43] 2026-01-11 14:11:41,893 | INFO     | traces error code: 0
[2026-01-11 14:11:43] 2026-01-11 14:11:41,893 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 14:11:43] 2026-01-11 14:11:42,496 [wrapper] ==== pilot stdout END ====
[2026-01-11 14:11:43] 2026-01-11 14:11:42,502 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 14:11:43] 2026-01-11 14:11:42,510 [wrapper] pilotpid: 2129085
[2026-01-11 14:11:43] 2026-01-11 14:11:42,516 [wrapper] Pilot exit status: 0
[2026-01-11 14:11:43] 2026-01-11 14:11:42,572 [wrapper] pandaids: 6965383923
[2026-01-11 14:11:43] 2026-01-11 14:11:42,844 [wrapper] cleanup supervisor_pilot 2220657 2129086
[2026-01-11 14:11:43] 2026-01-11 14:11:42,859 [wrapper] Test setup, not cleaning
[2026-01-11 14:11:43] 2026-01-11 14:11:42,873 [wrapper] apfmon messages muted
[2026-01-11 14:11:43] 2026-01-11 14:11:42,886 [wrapper] ==== wrapper stdout END ====
[2026-01-11 14:11:43] 2026-01-11 14:11:42,894 [wrapper] ==== wrapper stderr END ====
[2026-01-11 14:11:43]  *** Error codes and diagnostics ***
[2026-01-11 14:11:43]     "exeErrorCode": 0,
[2026-01-11 14:11:43]     "exeErrorDiag": "",
[2026-01-11 14:11:43]     "pilotErrorCode": 0,
[2026-01-11 14:11:43]     "pilotErrorDiag": "",
[2026-01-11 14:11:43]  *** Listing of results directory ***
[2026-01-11 14:11:43] total 432508
[2026-01-11 14:11:43] -rw-r--r-- 1 boinc boinc    579449 Jan 10 13:09 pilot3.tar.gz
[2026-01-11 14:11:43] -rwx------ 1 boinc boinc     36322 Jan 10 13:11 runpilot2-wrapper.sh
[2026-01-11 14:11:43] -rw-r--r-- 1 boinc boinc      5112 Jan 10 13:11 queuedata.json
[2026-01-11 14:11:43] -rw-rw-r-- 1 boinc boinc       100 Jan 11 13:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 14:11:43] -rwxr-xr-x 1 boinc boinc      7986 Jan 11 13:06 run_atlas
[2026-01-11 14:11:43] -rw-rw-r-- 1 boinc boinc       105 Jan 11 13:06 job.xml
[2026-01-11 14:11:43] -rw-r--r-- 2 boinc boinc 390915694 Jan 11 13:06 EVNT.47962006._000053.pool.root.1
[2026-01-11 14:11:43] -rw-r--r-- 2 boinc boinc     15847 Jan 11 13:06 start_atlas.sh
[2026-01-11 14:11:43] drwxrwx--x 2 boinc boinc      4096 Jan 11 13:06 shared
[2026-01-11 14:11:43] -rw-r--r-- 2 boinc boinc    592617 Jan 11 13:06 input.tar.gz
[2026-01-11 14:11:43] -rw-rw-r-- 1 boinc boinc      7052 Jan 11 13:06 init_data.xml
[2026-01-11 14:11:43] -rw-rw-r-- 1 boinc boinc         0 Jan 11 13:06 boinc_setup_complete
[2026-01-11 14:11:43] -rw-rw-r-- 1 boinc boinc         0 Jan 11 13:06 boinc_lockfile
[2026-01-11 14:11:43] -rw-rw-r-- 1 boinc boinc      2890 Jan 11 13:06 pandaJob.out
[2026-01-11 14:11:43] -rw------- 1 boinc boinc    989548 Jan 11 13:07 agis_schedconf.cvmfs.json
[2026-01-11 14:11:43] -rw------- 1 boinc boinc   1516240 Jan 11 13:07 agis_ddmendpoints.agis.ALL.json
[2026-01-11 14:11:43] drwx------ 5 boinc boinc      4096 Jan 11 13:07 pilot3
[2026-01-11 14:11:43] -rw-rw-r-- 1 boinc boinc       530 Jan 11 13:52 boinc_task_state.xml
[2026-01-11 14:11:43] -rw------- 1 boinc boinc  43691645 Jan 11 14:10 HITS.47962010._002064.pool.root.1
[2026-01-11 14:11:43] -rw------- 1 boinc boinc      1018 Jan 11 14:10 memory_monitor_summary.json
[2026-01-11 14:11:43] -rw------- 1 boinc boinc   1620920 Jan 11 14:10 log.47962010._002064.job.log.tgz.1
[2026-01-11 14:11:43] -rw------- 1 boinc boinc        95 Jan 11 14:10 pilot_heartbeat.json
[2026-01-11 14:11:43] -rw------- 1 boinc boinc      8505 Jan 11 14:11 heartbeat.json
[2026-01-11 14:11:43] -rw-rw-r-- 1 boinc boinc      8192 Jan 11 14:11 boinc_mmap_file
[2026-01-11 14:11:43] -rw-rw-r-- 1 boinc boinc        27 Jan 11 14:11 wrapper_checkpoint.txt
[2026-01-11 14:11:43] -rw------- 1 boinc boinc      4848 Jan 11 14:11 pilotlog.txt
[2026-01-11 14:11:43] -rw------- 1 boinc boinc    561536 Jan 11 14:11 log.47962010._002064.job.log.1
[2026-01-11 14:11:43] -rw------- 1 boinc boinc       353 Jan 11 14:11 output.list
[2026-01-11 14:11:43] -rw-rw-r-- 1 boinc boinc       620 Jan 11 14:11 runtime_log
[2026-01-11 14:11:43] -rw------- 1 boinc boinc   2201600 Jan 11 14:11 result.tar.gz
[2026-01-11 14:11:43] -rw-rw-r-- 1 boinc boinc      9167 Jan 11 14:11 runtime_log.err
[2026-01-11 14:11:43] -rw------- 1 boinc boinc       652 Jan 11 14:11 627MDmHvny8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7lmKDm9Ob5pn.diag
[2026-01-11 14:11:43] -rw-rw-r-- 1 boinc boinc     22170 Jan 11 14:11 stderr.txt
[2026-01-11 14:11:43] HITS file was successfully produced:
[2026-01-11 14:11:43] -rw------- 1 boinc boinc 43691645 Jan 11 14:10 shared/HITS.pool.root.1
[2026-01-11 14:11:43]  *** Contents of shared directory: ***
[2026-01-11 14:11:43] total 427176
[2026-01-11 14:11:43] -rw-r--r-- 2 boinc boinc 390915694 Jan 11 13:06 ATLAS.root_0
[2026-01-11 14:11:43] -rw-r--r-- 2 boinc boinc     15847 Jan 11 13:06 start_atlas.sh
[2026-01-11 14:11:43] -rw-r--r-- 2 boinc boinc    592617 Jan 11 13:06 input.tar.gz
[2026-01-11 14:11:43] -rw------- 1 boinc boinc  43691645 Jan 11 14:10 HITS.pool.root.1
[2026-01-11 14:11:43] -rw------- 1 boinc boinc   2201600 Jan 11 14:11 result.tar.gz
14:11:45 (2122553): run_atlas exited; CPU time 16448.763849
14:11:45 (2122553): called boinc_finish(0)

</stderr_txt>
]]>

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