Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:59:19 (1901634): wrapper (7.7.26015): starting
03:59:19 (1901634): wrapper: running run_atlas (--nthreads 12)
[2026-01-11 03:59:19] Arguments: --nthreads 12
[2026-01-11 03:59:19] Threads: 12
[2026-01-11 03:59:19] Checking for CVMFS
[2026-01-11 03:59:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 03:59:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 03:59:19] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 03:59:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 03:59:19] 2.13.3.0 4294 4895 114436 155000 0 188 38996129 46080000 922 130560 0 10414785 99.996 180482 927 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2026-01-11 03:59:19] CVMFS is ok
[2026-01-11 03:59:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 03:59:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 03:59:19] Further information can be found at the LHC@home message board.
[2026-01-11 03:59:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 03:59:19] Checking for apptainer binary...
[2026-01-11 03:59:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 03:59:19] Running /usr/bin/apptainer --version
[2026-01-11 03:59:19] apptainer version 1.4.5-2.el9
[2026-01-11 03:59:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 03:59:19] gpu01.farm.particle.cz
[2026-01-11 03:59:19] apptainer works
[2026-01-11 03:59:19] Set ATHENA_PROC_NUMBER=12
[2026-01-11 03:59:19] Set ATHENA_CORE_NUMBER=12
[2026-01-11 03:59:19] Starting ATLAS job with PandaID=6965382644
[2026-01-11 03:59:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 04:51:50]  *** The last 200 lines of the pilot log: ***
[2026-01-11 04:51:50]  replicas=None
[2026-01-11 04:51:50]  scope=mc23_13p6TeV
[2026-01-11 04:51:50]  status=None
[2026-01-11 04:51:50]  status_code=0
[2026-01-11 04:51:50]  storage_token=
[2026-01-11 04:51:50]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6965382644/log.47898826._040220.job.log.tgz.1
[2026-01-11 04:51:50]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f4/3c/log.47898826._040220.job.log.tgz.1
[2026-01-11 04:51:50]  workdir=None
[2026-01-11 04:51:50] ]
[2026-01-11 04:51:50] 2026-01-11 03:51:09,939 | INFO     | transferring file log.47898826._040220.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6965382644/log.47898826._040220.job.log.tgz.1 to /var/lib/boinc/slots/
[2026-01-11 04:51:50] 2026-01-11 03:51:09,939 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6965382644/log.47898826._040220.job.log.tgz.1 /var/lib/boinc/slots/0/log.47898826._040220.job
[2026-01-11 04:51:50] 2026-01-11 03:51:09,953 | INFO     | adding to output.list: log.47898826._040220.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f4/3c/log.47898826._040220.job.log.tg
[2026-01-11 04:51:50] 2026-01-11 03:51:09,953 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-11 04:51:50] 2026-01-11 03:51:09,953 | INFO     | summary of transferred files:
[2026-01-11 04:51:50] 2026-01-11 03:51:09,953 | INFO     |  -- lfn=log.47898826._040220.job.log.tgz.1, status_code=0, status=transferred
[2026-01-11 04:51:50] 2026-01-11 03:51:09,953 | INFO     | stage-out finished correctly
[2026-01-11 04:51:50] 2026-01-11 03:51:10,555 | WARNING  | process 1912164 can no longer be monitored (due to stat problems) - aborting
[2026-01-11 04:51:50] 2026-01-11 03:51:10,555 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6965382644/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 04:51:50] 2026-01-11 03:51:10,637 | INFO     | number of running child processes to parent process 1912164: 1
[2026-01-11 04:51:50] 2026-01-11 03:51:10,637 | INFO     | maximum number of monitored processes: 6
[2026-01-11 04:51:50] 2026-01-11 03:51:10,903 | INFO     | time since job start (3103s) is within the limit (349056.0s)
[2026-01-11 04:51:50] 2026-01-11 03:51:12,327 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-11 04:51:50] 2026-01-11 03:51:12,908 | INFO     | time since job start (3105s) is within the limit (349056.0s)
[2026-01-11 04:51:50] 2026-01-11 03:51:13,140 | INFO     | monitor loop #238: job 0:6965382644 is in state 'finished'
[2026-01-11 04:51:50] 2026-01-11 03:51:13,140 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 04:51:50] 2026-01-11 03:51:14,237 | INFO     | job 6965382644 has state=finished
[2026-01-11 04:51:50] 2026-01-11 03:51:14,238 | INFO     | preparing for final server update for job 6965382644 in state='finished'
[2026-01-11 04:51:50] 2026-01-11 03:51:14,238 | INFO     | this job has now completed (state=finished)
[2026-01-11 04:51:50] 2026-01-11 03:51:14,238 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-11 04:51:50] 2026-01-11 03:51:14,238 | INFO     | log transfer has been attempted: DONE
[2026-01-11 04:51:50] 2026-01-11 03:51:14,238 | INFO     | job 6965382644 has finished - writing final server update
[2026-01-11 04:51:50] 2026-01-11 03:51:14,238 | INFO     | total number of processed events: 400 (read)
[2026-01-11 04:51:50] 2026-01-11 03:51:14,239 | INFO     | executing command: lscpu
[2026-01-11 04:51:50] 2026-01-11 03:51:14,262 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 04:51:50] 2026-01-11 03:51:14,913 | INFO     | time since job start (3107s) is within the limit (349056.0s)
[2026-01-11 04:51:50] 2026-01-11 03:51:15,643 | INFO     | monitor loop #239: job 0:6965382644 is in state 'finished'
[2026-01-11 04:51:50] 2026-01-11 03:51:15,643 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 04:51:50] 2026-01-11 03:51:16,918 | INFO     | time since job start (3109s) is within the limit (349056.0s)
[2026-01-11 04:51:50] 2026-01-11 03:51:17,346 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-11 04:51:50] 2026-01-11 03:51:17,349 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3223.5775625000006
[2026-01-11 04:51:50] 2026-01-11 03:51:17,352 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6965382644/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 04:51:50] 2026-01-11 03:51:17,353 | INFO     | extracted standard info from prmon json
[2026-01-11 04:51:50] 2026-01-11 03:51:17,353 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 04:51:50] 2026-01-11 03:51:17,353 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 04:51:50] 2026-01-11 03:51:17,353 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 04:51:50] 2026-01-11 03:51:17,353 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 04:51:50] 2026-01-11 03:51:17,354 | INFO     | fitting pss+swap vs Time
[2026-01-11 04:51:50] 2026-01-11 03:51:17,354 | INFO     | sum of square deviations: 26400495.0
[2026-01-11 04:51:50] 2026-01-11 03:51:17,354 | INFO     | sum of deviations: 444201054.5
[2026-01-11 04:51:50] 2026-01-11 03:51:17,354 | INFO     | mean x: 1768102004.5
[2026-01-11 04:51:50] 2026-01-11 03:51:17,354 | INFO     | mean y: 2727134.977272727
[2026-01-11 04:51:50] 2026-01-11 03:51:17,354 | INFO     | intersect: -29746441388.660778
[2026-01-11 04:51:50] 2026-01-11 03:51:17,354 | INFO     | chi2: 0.002383509370194157
[2026-01-11 04:51:50] 2026-01-11 03:51:17,354 | INFO     | current memory leak: 16.83 B/s (using 44 data points, chi2=0.00)
[2026-01-11 04:51:50] 2026-01-11 03:51:17,355 | INFO     | could have reported an average CPU frequency of 3231 MHz (5 samples)
[2026-01-11 04:51:50] 2026-01-11 03:51:17,355 | INFO     | ..............................
[2026-01-11 04:51:50] 2026-01-11 03:51:17,355 | INFO     | . Timing measurements:
[2026-01-11 04:51:50] 2026-01-11 03:51:17,355 | INFO     | . get job = 0 s
[2026-01-11 04:51:50] 2026-01-11 03:51:17,355 | INFO     | . initial setup = 2 s
[2026-01-11 04:51:50] 2026-01-11 03:51:17,355 | INFO     | . payload setup = 3 s
[2026-01-11 04:51:50] 2026-01-11 03:51:17,355 | INFO     | . stage-in = 0 s
[2026-01-11 04:51:50] 2026-01-11 03:51:17,355 | INFO     | . payload execution = 3080 s
[2026-01-11 04:51:50] 2026-01-11 03:51:17,355 | INFO     | . stage-out = 0 s
[2026-01-11 04:51:50] 2026-01-11 03:51:17,355 | INFO     | . log creation = 0 s
[2026-01-11 04:51:50] 2026-01-11 03:51:17,355 | INFO     | ..............................
[2026-01-11 04:51:50] 2026-01-11 03:51:17,406 | INFO     | 
[2026-01-11 04:51:50] 2026-01-11 03:51:17,407 | INFO     | job summary report
[2026-01-11 04:51:50] 2026-01-11 03:51:17,407 | INFO     | --------------------------------------------------
[2026-01-11 04:51:50] 2026-01-11 03:51:17,407 | INFO     | PanDA job id: 6965382644
[2026-01-11 04:51:50] 2026-01-11 03:51:17,407 | INFO     | task id: 47898826
[2026-01-11 04:51:50] 2026-01-11 03:51:17,407 | INFO     | errors: (none)
[2026-01-11 04:51:50] 2026-01-11 03:51:17,407 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 04:51:50] 2026-01-11 03:51:17,407 | INFO     | pilot state: finished 
[2026-01-11 04:51:50] 2026-01-11 03:51:17,407 | INFO     | transexitcode: 0
[2026-01-11 04:51:50] 2026-01-11 03:51:17,407 | INFO     | exeerrorcode: 0
[2026-01-11 04:51:50] 2026-01-11 03:51:17,407 | INFO     | exeerrordiag: 
[2026-01-11 04:51:50] 2026-01-11 03:51:17,407 | INFO     | exitcode: 0
[2026-01-11 04:51:50] 2026-01-11 03:51:17,407 | INFO     | exitmsg: OK
[2026-01-11 04:51:50] 2026-01-11 03:51:17,407 | INFO     | cpuconsumptiontime: 33593 s
[2026-01-11 04:51:50] 2026-01-11 03:51:17,407 | INFO     | nevents: 400
[2026-01-11 04:51:50] 2026-01-11 03:51:17,407 | INFO     | neventsw: 0
[2026-01-11 04:51:50] 2026-01-11 03:51:17,407 | INFO     | pid: 1912164
[2026-01-11 04:51:50] 2026-01-11 03:51:17,407 | INFO     | pgrp: 1912164
[2026-01-11 04:51:50] 2026-01-11 03:51:17,407 | INFO     | corecount: 12
[2026-01-11 04:51:50] 2026-01-11 03:51:17,407 | INFO     | event service: False
[2026-01-11 04:51:50] 2026-01-11 03:51:17,407 | INFO     | sizes: {0: 2283918, 3: 2284180, 11: 2284208, 3088: 2309692, 3089: 2318690, 3091: 2318746, 3096: 2319100}
[2026-01-11 04:51:50] 2026-01-11 03:51:17,407 | INFO     | --------------------------------------------------
[2026-01-11 04:51:50] 2026-01-11 03:51:17,407 | INFO     | 
[2026-01-11 04:51:50] 2026-01-11 03:51:17,408 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2026-01-11 04:51:50] 2026-01-11 03:51:17,420 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 04:51:50] 2026-01-11 03:51:17,421 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 04:51:50] 2026-01-11 03:51:17,421 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 04:51:50] 2026-01-11 03:51:17,421 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 04:51:50] 2026-01-11 03:51:17,421 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 04:51:50] 2026-01-11 03:51:17,421 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 04:51:50] 2026-01-11 03:51:17,421 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 04:51:50] 2026-01-11 03:51:17,421 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 04:51:50] 2026-01-11 03:51:17,421 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 04:51:50] 2026-01-11 03:51:17,421 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 04:51:50] 2026-01-11 03:51:17,421 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 04:51:50] 2026-01-11 03:51:17,421 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 04:51:50] 2026-01-11 03:51:17,422 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 04:51:50] 2026-01-11 03:51:17,422 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 04:51:50] 2026-01-11 03:51:17,422 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 04:51:50] 2026-01-11 03:51:17,422 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 04:51:50] 2026-01-11 03:51:17,422 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 04:51:50] 2026-01-11 03:51:17,422 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 04:51:50] 2026-01-11 03:51:17,422 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 04:51:50] 2026-01-11 03:51:17,422 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 04:51:50] 2026-01-11 03:51:17,422 | INFO     | job 6965382644 has completed (purged errors)
[2026-01-11 04:51:50] 2026-01-11 03:51:17,422 | INFO     | overall cleanup function is called
[2026-01-11 04:51:50] 2026-01-11 03:51:18,431 | INFO     | --- collectZombieJob: --- 10, [1912164]
[2026-01-11 04:51:50] 2026-01-11 03:51:18,431 | INFO     | zombie collector waiting for pid 1912164
[2026-01-11 04:51:50] 2026-01-11 03:51:18,431 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 04:51:50] 2026-01-11 03:51:18,431 | INFO     | collected zombie processes
[2026-01-11 04:51:50] 2026-01-11 03:51:18,431 | INFO     | will attempt to kill all subprocesses of pid=1912164
[2026-01-11 04:51:50] 2026-01-11 03:51:18,519 | INFO     | process IDs to be killed: [1912164] (in reverse order)
[2026-01-11 04:51:50] 2026-01-11 03:51:18,557 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 04:51:50] 2026-01-11 03:51:18,557 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 04:51:50] 2026-01-11 03:51:18,560 | INFO     | did not find any defunct processes belonging to 1912164
[2026-01-11 04:51:50] 2026-01-11 03:51:18,563 | INFO     | did not find any defunct processes belonging to 1912164
[2026-01-11 04:51:50] 2026-01-11 03:51:18,563 | INFO     | ready for new job
[2026-01-11 04:51:50] 2026-01-11 03:51:18,563 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 04:51:50] 2026-01-11 03:51:18,564 | INFO     | ***************************************
[2026-01-11 04:51:50] 2026-01-11 03:51:18,564 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 04:51:50] 2026-01-11 03:51:18,564 | INFO     | ***************************************
[2026-01-11 04:51:50] 2026-01-11 03:51:18,564 | INFO     | 
[2026-01-11 04:51:50] 2026-01-11 03:51:18,565 | INFO     | architecture information:
[2026-01-11 04:51:50] 2026-01-11 03:51:18,565 | INFO     | executing command: cat /etc/os-release
[2026-01-11 04:51:50] 2026-01-11 03:51:18,576 | INFO     | cat /etc/os-release:
[2026-01-11 04:51:50] NAME="CentOS Linux"
[2026-01-11 04:51:50] VERSION="7 (Core)"
[2026-01-11 04:51:50] ID="centos"
[2026-01-11 04:51:50] ID_LIKE="rhel fedora"
[2026-01-11 04:51:50] VERSION_ID="7"
[2026-01-11 04:51:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 04:51:50] ANSI_COLOR="0;31"
[2026-01-11 04:51:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 04:51:50] HOME_URL="https://www.centos.org/"
[2026-01-11 04:51:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 04:51:50] 
[2026-01-11 04:51:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 04:51:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 04:51:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 04:51:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 04:51:50] 
[2026-01-11 04:51:50] 2026-01-11 03:51:18,576 | INFO     | ***************************************
[2026-01-11 04:51:50] 2026-01-11 03:51:19,079 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2026-01-11 04:51:50] 2026-01-11 03:51:19,092 | INFO     | sufficient remaining disk space (42075160576 B)
[2026-01-11 04:51:50] 2026-01-11 03:51:19,092 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 04:51:50] 2026-01-11 03:51:19,092 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 04:51:50] 2026-01-11 03:51:19,092 | INFO     | update_server=False
[2026-01-11 04:51:50] 2026-01-11 03:51:19,092 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 04:51:50] 2026-01-11 03:51:19,092 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 04:51:50] 2026-01-11 03:51:19,093 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 04:51:50] 2026-01-11 03:51:19,151 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 04:51:50] 2026-01-11 03:51:19,151 | INFO     | aborting loop
[2026-01-11 04:51:50] 2026-01-11 03:51:19,641 | INFO     | all data control threads have been joined
[2026-01-11 04:51:50] 2026-01-11 03:51:19,727 | INFO     | all payload control threads have been joined
[2026-01-11 04:51:50] 2026-01-11 03:51:20,097 | INFO     | [job] retrieve thread has finished
[2026-01-11 04:51:50] 2026-01-11 03:51:20,098 | INFO     | [job] queue monitor thread has finished
[2026-01-11 04:51:50] 2026-01-11 03:51:20,156 | INFO     | [job] job monitor thread has finished
[2026-01-11 04:51:50] 2026-01-11 03:51:20,242 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 04:51:50] 2026-01-11 03:51:20,517 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 04:51:50] 2026-01-11 03:51:20,530 | INFO     | all job control threads have been joined
[2026-01-11 04:51:50] 2026-01-11 03:51:20,647 | INFO     | [data] control thread has finished
[2026-01-11 04:51:50] 2026-01-11 03:51:20,733 | INFO     | [payload] control thread has finished
[2026-01-11 04:51:50] 2026-01-11 03:51:20,760 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 04:51:50] 2026-01-11 03:51:20,787 | INFO     | [job] validate thread has finished
[2026-01-11 04:51:50] 2026-01-11 03:51:20,788 | INFO     | [data] copytool_in thread has finished
[2026-01-11 04:51:50] 2026-01-11 03:51:20,810 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 04:51:50] 2026-01-11 03:51:20,923 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 04:51:50] 2026-01-11 03:51:21,017 | INFO     | [payload] validate_post thread has finished
[2026-01-11 04:51:50] 2026-01-11 03:51:21,496 | INFO     | [payload] failed_post thread has finished
[2026-01-11 04:51:50] 2026-01-11 03:51:21,536 | INFO     | [job] control thread has finished
[2026-01-11 04:51:50] 2026-01-11 03:51:22,523 | INFO     | [data] copytool_out thread has finished
[2026-01-11 04:51:50] 2026-01-11 03:51:23,098 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 04:51:50] 2026-01-11 03:51:31,546 | INFO     | [monitor] cgroup control has ended
[2026-01-11 04:51:50] 2026-01-11 03:51:32,528 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139724412827456)>', '<ExcThread(monitor, started 139724060612352)>']
[2026-01-11 04:51:50] 2026-01-11 03:51:37,554 | INFO     | all workflow threads have been joined
[2026-01-11 04:51:50] 2026-01-11 03:51:37,554 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 04:51:50] 2026-01-11 03:51:37,554 | INFO     | traces error code: 0
[2026-01-11 04:51:50] 2026-01-11 03:51:37,555 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 04:51:50] 2026-01-11 03:51:50,096 | INFO     | PID=1905496 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 04:51:50] 2026-01-11 03:51:50,097 | INFO     | .. there are 2 such processes running
[2026-01-11 04:51:50] 2026-01-11 03:51:50,097 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 04:51:50] 2026-01-11 03:51:50,097 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 04:51:50] 2026-01-11 03:51:50,097 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 04:51:50] 2026-01-11 03:51:50,097 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 04:51:50] 2026-01-11 03:51:50,097 | INFO     | [monitor] control thread has ended
[2026-01-11 04:51:50] 2026-01-11 03:51:50,163 [wrapper] ==== pilot stdout END ====
[2026-01-11 04:51:50] 2026-01-11 03:51:50,165 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 04:51:50] 2026-01-11 03:51:50,168 [wrapper] pilotpid: 1905496
[2026-01-11 04:51:50] 2026-01-11 03:51:50,170 [wrapper] Pilot exit status: 0
[2026-01-11 04:51:50] 2026-01-11 03:51:50,177 [wrapper] pandaids: 6965382644
[2026-01-11 04:51:50] 2026-01-11 03:51:50,202 [wrapper] cleanup supervisor_pilot 1984668 1905497
[2026-01-11 04:51:50] 2026-01-11 03:51:50,204 [wrapper] Test setup, not cleaning
[2026-01-11 04:51:50] 2026-01-11 03:51:50,206 [wrapper] apfmon messages muted
[2026-01-11 04:51:50] 2026-01-11 03:51:50,208 [wrapper] ==== wrapper stdout END ====
[2026-01-11 04:51:50] 2026-01-11 03:51:50,209 [wrapper] ==== wrapper stderr END ====
[2026-01-11 04:51:50]  *** Error codes and diagnostics ***
[2026-01-11 04:51:50]     "exeErrorCode": 0,
[2026-01-11 04:51:50]     "exeErrorDiag": "",
[2026-01-11 04:51:50]     "pilotErrorCode": 0,
[2026-01-11 04:51:50]     "pilotErrorDiag": "",
[2026-01-11 04:51:50]  *** Listing of results directory ***
[2026-01-11 04:51:50] total 441680
[2026-01-11 04:51:50] -rw-r--r-- 1 boinc boinc      5112 Jan 10 14:09 queuedata.json
[2026-01-11 04:51:50] -rw-r--r-- 1 boinc boinc    579449 Jan 10 14:09 pilot3.tar.gz
[2026-01-11 04:51:50] -rwx------ 1 boinc boinc     36322 Jan 10 14:10 runpilot2-wrapper.sh
[2026-01-11 04:51:50] -rw-r--r-- 1 boinc boinc       100 Jan 11 03:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 04:51:50] -rwxr-xr-x 1 boinc boinc      7986 Jan 11 03:59 run_atlas
[2026-01-11 04:51:50] -rw-r--r-- 1 boinc boinc       105 Jan 11 03:59 job.xml
[2026-01-11 04:51:50] -rw-r--r-- 1 boinc boinc      9456 Jan 11 03:59 init_data.xml
[2026-01-11 04:51:50] -rw-r--r-- 2 boinc boinc 227183246 Jan 11 03:59 EVNT.47898824._000941.pool.root.1
[2026-01-11 04:51:50] -rw-r--r-- 2 boinc boinc     15847 Jan 11 03:59 start_atlas.sh
[2026-01-11 04:51:50] drwxrwx--x 2 boinc boinc      4096 Jan 11 03:59 shared
[2026-01-11 04:51:50] -rw-r--r-- 2 boinc boinc    592413 Jan 11 03:59 input.tar.gz
[2026-01-11 04:51:50] -rw-r--r-- 1 boinc boinc         0 Jan 11 03:59 boinc_lockfile
[2026-01-11 04:51:50] -rw-r--r-- 1 boinc boinc      2518 Jan 11 03:59 pandaJob.out
[2026-01-11 04:51:50] -rw------- 1 boinc boinc    989548 Jan 11 03:59 agis_schedconf.cvmfs.json
[2026-01-11 04:51:50] -rw------- 1 boinc boinc   1516240 Jan 11 03:59 agis_ddmendpoints.agis.ALL.json
[2026-01-11 04:51:50] drwx------ 5 boinc boinc      4096 Jan 11 03:59 pilot3
[2026-01-11 04:51:50] -rw------- 1 boinc boinc 219462428 Jan 11 04:50 HITS.47898826._040220.pool.root.1
[2026-01-11 04:51:50] -rw------- 1 boinc boinc        95 Jan 11 04:50 pilot_heartbeat.json
[2026-01-11 04:51:50] -rw-r--r-- 1 boinc boinc       530 Jan 11 04:51 boinc_task_state.xml
[2026-01-11 04:51:50] -rw------- 1 boinc boinc      1015 Jan 11 04:51 memory_monitor_summary.json
[2026-01-11 04:51:50] -rw------- 1 boinc boinc    380830 Jan 11 04:51 log.47898826._040220.job.log.tgz.1
[2026-01-11 04:51:50] -rw------- 1 boinc boinc      7764 Jan 11 04:51 heartbeat.json
[2026-01-11 04:51:50] -rw-r--r-- 1 boinc boinc        27 Jan 11 04:51 wrapper_checkpoint.txt
[2026-01-11 04:51:50] -rw-r--r-- 1 boinc boinc      8192 Jan 11 04:51 boinc_mmap_file
[2026-01-11 04:51:50] -rw------- 1 boinc boinc       822 Jan 11 04:51 pilotlog.txt
[2026-01-11 04:51:50] -rw------- 1 boinc boinc    480915 Jan 11 04:51 log.47898826._040220.job.log.1
[2026-01-11 04:51:50] -rw------- 1 boinc boinc       357 Jan 11 04:51 output.list
[2026-01-11 04:51:50] -rw-r--r-- 1 boinc boinc       620 Jan 11 04:51 runtime_log
[2026-01-11 04:51:50] -rw------- 1 boinc boinc    880640 Jan 11 04:51 result.tar.gz
[2026-01-11 04:51:50] -rw-r--r-- 1 boinc boinc      8854 Jan 11 04:51 runtime_log.err
[2026-01-11 04:51:50] -rw------- 1 boinc boinc       658 Jan 11 04:51 pSANDmTuny8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmujmKDmM5SMpm.diag
[2026-01-11 04:51:50] -rw-r--r-- 1 boinc boinc     21932 Jan 11 04:51 stderr.txt
[2026-01-11 04:51:50] HITS file was successfully produced:
[2026-01-11 04:51:50] -rw------- 1 boinc boinc 219462428 Jan 11 04:50 shared/HITS.pool.root.1
[2026-01-11 04:51:50]  *** Contents of shared directory: ***
[2026-01-11 04:51:50] total 437644
[2026-01-11 04:51:50] -rw-r--r-- 2 boinc boinc 227183246 Jan 11 03:59 ATLAS.root_0
[2026-01-11 04:51:50] -rw-r--r-- 2 boinc boinc     15847 Jan 11 03:59 start_atlas.sh
[2026-01-11 04:51:50] -rw-r--r-- 2 boinc boinc    592413 Jan 11 03:59 input.tar.gz
[2026-01-11 04:51:50] -rw------- 1 boinc boinc 219462428 Jan 11 04:50 HITS.pool.root.1
[2026-01-11 04:51:50] -rw------- 1 boinc boinc    880640 Jan 11 04:51 result.tar.gz
04:51:51 (1901634): run_atlas exited; CPU time 33620.559517
04:51:51 (1901634): called boinc_finish(0)

</stderr_txt>
]]>

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