Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:23:35 (2545809): wrapper (7.7.26015): starting
08:23:35 (2545809): wrapper: running run_atlas (--nthreads 10)
[2026-01-10 08:23:35] Arguments: --nthreads 10
[2026-01-10 08:23:35] Threads: 10
[2026-01-10 08:23:35] Checking for CVMFS
[2026-01-10 08:23:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 08:23:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 08:23:36] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 08:23:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 08:23:36] 2.13.3.0 12359 94907 371152 154981 1 136 30737062 32935936 16858 16776704 0 429581849 99.578 530634552 32978 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 08:23:36] CVMFS is ok
[2026-01-10 08:23:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 08:23:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 08:23:36] Further information can be found at the LHC@home message board.
[2026-01-10 08:23:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 08:23:36] Checking for apptainer binary...
[2026-01-10 08:23:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 08:23:36] Running /usr/bin/apptainer --version
[2026-01-10 08:23:36] apptainer version 1.4.5-2.el9
[2026-01-10 08:23:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 08:23:36] c6-12-29-3.aglt2.org
[2026-01-10 08:23:36] apptainer works
[2026-01-10 08:23:36] Set ATHENA_PROC_NUMBER=10
[2026-01-10 08:23:36] Set ATHENA_CORE_NUMBER=10
[2026-01-10 08:23:36] Starting ATLAS job with PandaID=6965384398
[2026-01-10 08:23:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 10:45:31]  *** The last 200 lines of the pilot log: ***
[2026-01-10 10:45:31] 2026-01-10 15:43:52,086 | INFO     | monitor loop #519: job 0:6965384398 is in state 'finished'
[2026-01-10 10:45:31] 2026-01-10 15:43:52,086 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:45:31] 2026-01-10 15:43:52,180 | INFO     | time since job start (8344s) is within the limit (349056.0s)
[2026-01-10 10:45:31] 2026-01-10 15:43:54,382 | INFO     | PID=2554847 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 10:45:31] 2026-01-10 15:43:54,383 | INFO     | .. there are 15 such processes running
[2026-01-10 10:45:31] 2026-01-10 15:43:54,596 | INFO     | monitor loop #520: job 0:6965384398 is in state 'finished'
[2026-01-10 10:45:31] 2026-01-10 15:43:54,596 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:45:31] 2026-01-10 15:43:55,384 | INFO     | time since job start (8347s) is within the limit (349056.0s)
[2026-01-10 10:45:31] 2026-01-10 15:43:57,101 | INFO     | monitor loop #521: job 0:6965384398 is in state 'finished'
[2026-01-10 10:45:31] 2026-01-10 15:43:57,101 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:45:31] 2026-01-10 15:43:57,391 | INFO     | time since job start (8349s) is within the limit (349056.0s)
[2026-01-10 10:45:31] 2026-01-10 15:43:58,179 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-10 10:45:31] 2026-01-10 15:43:58,206 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2633.3271666666665
[2026-01-10 10:45:31] 2026-01-10 15:43:58,300 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6965384398/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 10:45:31] 2026-01-10 15:43:58,301 | INFO     | extracted standard info from prmon json
[2026-01-10 10:45:31] 2026-01-10 15:43:58,301 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 10:45:31] 2026-01-10 15:43:58,301 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 10:45:31] 2026-01-10 15:43:58,309 | INFO     | fitting pss+swap vs Time
[2026-01-10 10:45:31] 2026-01-10 15:43:58,309 | INFO     | sum of square deviations: 745790262.9253707
[2026-01-10 10:45:31] 2026-01-10 15:43:58,310 | INFO     | sum of deviations: 4788888768.432842
[2026-01-10 10:45:31] 2026-01-10 15:43:58,310 | INFO     | mean x: 1768055714.9104478
[2026-01-10 10:45:31] 2026-01-10 15:43:58,330 | INFO     | mean y: 2316081.619402985
[2026-01-10 10:45:31] 2026-01-10 15:43:58,330 | INFO     | intersect: -11350771476.65221
[2026-01-10 10:45:31] 2026-01-10 15:43:58,331 | INFO     | chi2: 15.497739963506953
[2026-01-10 10:45:31] 2026-01-10 15:43:58,331 | INFO     | sum of square deviations: 665490870.0155059
[2026-01-10 10:45:31] 2026-01-10 15:43:58,332 | INFO     | sum of deviations: 40929015584.527115
[2026-01-10 10:45:31] 2026-01-10 15:43:58,332 | INFO     | mean x: 1768055562.5426357
[2026-01-10 10:45:31] 2026-01-10 15:43:58,332 | INFO     | mean y: 2384715.4496124033
[2026-01-10 10:45:31] 2026-01-10 15:43:58,332 | INFO     | intersect: -108736558122.23544
[2026-01-10 10:45:31] 2026-01-10 15:43:58,333 | INFO     | chi2: 11.78929089210853
[2026-01-10 10:45:31] 2026-01-10 15:43:58,333 | INFO     | current chi2=11.78929089210853 (change=23.92896693408737 %)
[2026-01-10 10:45:31] 2026-01-10 15:43:58,333 | INFO     | right removable region: 128
[2026-01-10 10:45:31] 2026-01-10 15:43:58,333 | INFO     | sum of square deviations: 665212100.0155059
[2026-01-10 10:45:31] 2026-01-10 15:43:58,349 | INFO     | sum of deviations: -36386615435.58914
[2026-01-10 10:45:31] 2026-01-10 15:43:58,350 | INFO     | mean x: 1768055867.5426357
[2026-01-10 10:45:31] 2026-01-10 15:43:58,350 | INFO     | mean y: 2393986.379844961
[2026-01-10 10:45:31] 2026-01-10 15:43:58,350 | INFO     | intersect: 96713757053.00359
[2026-01-10 10:45:31] 2026-01-10 15:43:58,351 | INFO     | chi2: 10.762734039411214
[2026-01-10 10:45:31] 2026-01-10 15:43:58,351 | INFO     | current chi2=10.762734039411214 (change=30.552880195728 %)
[2026-01-10 10:45:31] 2026-01-10 15:43:58,351 | INFO     | sum of square deviations: 590634044.7338698
[2026-01-10 10:45:31] 2026-01-10 15:43:58,352 | INFO     | sum of deviations: -65788681149.53226
[2026-01-10 10:45:31] 2026-01-10 15:43:58,352 | INFO     | mean x: 1768056020.185484
[2026-01-10 10:45:31] 2026-01-10 15:43:58,352 | INFO     | mean y: 2453968.370967742
[2026-01-10 10:45:31] 2026-01-10 15:43:58,353 | INFO     | intersect: 196940092094.03104
[2026-01-10 10:45:31] 2026-01-10 15:43:58,373 | INFO     | chi2: 8.175326073706534
[2026-01-10 10:45:31] 2026-01-10 15:43:58,373 | INFO     | current chi2=8.175326073706534 (change=24.040433929056064 %)
[2026-01-10 10:45:31] 2026-01-10 15:43:58,374 | INFO     | left removable region: 20
[2026-01-10 10:45:31] 2026-01-10 15:43:58,374 | INFO     | sum of square deviations: 390124432.91666734
[2026-01-10 10:45:31] 2026-01-10 15:43:58,374 | INFO     | sum of deviations: -42717289533.0
[2026-01-10 10:45:31] 2026-01-10 15:43:58,375 | INFO     | mean x: 1768056142.4722223
[2026-01-10 10:45:31] 2026-01-10 15:43:58,375 | INFO     | mean y: 2604608.3333333335
[2026-01-10 10:45:31] 2026-01-10 15:43:58,375 | INFO     | intersect: 193598697998.1516
[2026-01-10 10:45:31] 2026-01-10 15:43:58,375 | INFO     | chi2: 2.5520270741656956
[2026-01-10 10:45:31] 2026-01-10 15:43:58,375 | INFO     | current memory leak: -109.50 B/s (using 108 data points, chi2=2.55)
[2026-01-10 10:45:31] 2026-01-10 15:43:58,376 | INFO     | could have reported an average CPU frequency of 2615 MHz (8 samples)
[2026-01-10 10:45:31] 2026-01-10 15:43:58,376 | INFO     | ..............................
[2026-01-10 10:45:31] 2026-01-10 15:43:58,376 | INFO     | . Timing measurements:
[2026-01-10 10:45:31] 2026-01-10 15:43:58,376 | INFO     | . get job = 0 s
[2026-01-10 10:45:31] 2026-01-10 15:43:58,376 | INFO     | . initial setup = 6 s
[2026-01-10 10:45:31] 2026-01-10 15:43:58,376 | INFO     | . payload setup = 52 s
[2026-01-10 10:45:31] 2026-01-10 15:43:58,376 | INFO     | . stage-in = 0 s
[2026-01-10 10:45:31] 2026-01-10 15:43:58,376 | INFO     | . payload execution = 8172 s
[2026-01-10 10:45:31] 2026-01-10 15:43:58,377 | INFO     | . stage-out = 3 s
[2026-01-10 10:45:31] 2026-01-10 15:43:58,397 | INFO     | . log creation = 1 s
[2026-01-10 10:45:31] 2026-01-10 15:43:58,397 | INFO     | ..............................
[2026-01-10 10:45:31] 2026-01-10 15:43:58,909 | INFO     | 
[2026-01-10 10:45:31] 2026-01-10 15:43:58,909 | INFO     | job summary report
[2026-01-10 10:45:31] 2026-01-10 15:43:58,909 | INFO     | --------------------------------------------------
[2026-01-10 10:45:31] 2026-01-10 15:43:58,909 | INFO     | PanDA job id: 6965384398
[2026-01-10 10:45:31] 2026-01-10 15:43:58,909 | INFO     | task id: 47962010
[2026-01-10 10:45:31] 2026-01-10 15:43:58,909 | INFO     | errors: (none)
[2026-01-10 10:45:31] 2026-01-10 15:43:58,909 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 10:45:31] 2026-01-10 15:43:58,910 | INFO     | pilot state: finished 
[2026-01-10 10:45:31] 2026-01-10 15:43:58,910 | INFO     | transexitcode: 0
[2026-01-10 10:45:31] 2026-01-10 15:43:58,910 | INFO     | exeerrorcode: 0
[2026-01-10 10:45:31] 2026-01-10 15:43:58,910 | INFO     | exeerrordiag: 
[2026-01-10 10:45:31] 2026-01-10 15:43:58,910 | INFO     | exitcode: 0
[2026-01-10 10:45:31] 2026-01-10 15:43:58,910 | INFO     | exitmsg: OK
[2026-01-10 10:45:31] 2026-01-10 15:43:58,910 | INFO     | cpuconsumptiontime: 14517 s
[2026-01-10 10:45:31] 2026-01-10 15:43:58,910 | INFO     | nevents: 50
[2026-01-10 10:45:31] 2026-01-10 15:43:58,910 | INFO     | neventsw: 0
[2026-01-10 10:45:31] 2026-01-10 15:43:58,910 | INFO     | pid: 2575690
[2026-01-10 10:45:31] 2026-01-10 15:43:58,910 | INFO     | pgrp: 2575690
[2026-01-10 10:45:31] 2026-01-10 15:43:58,910 | INFO     | corecount: 10
[2026-01-10 10:45:31] 2026-01-10 15:43:58,910 | INFO     | event service: False
[2026-01-10 10:45:31] 2026-01-10 15:43:58,911 | INFO     | sizes: {0: 2283743, 1: 2284428, 2: 2284456, 3: 2284655, 15: 2284655, 25: 2284683, 36: 2284839, 38: 2285129, 48: 2285157, 8229: 2313555, 8230: 2313554, 8234: 232288
[2026-01-10 10:45:31] 2026-01-10 15:43:58,911 | INFO     | --------------------------------------------------
[2026-01-10 10:45:31] 2026-01-10 15:43:58,911 | INFO     | 
[2026-01-10 10:45:31] 2026-01-10 15:43:58,911 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-10 10:45:31] 2026-01-10 15:43:58,984 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 10:45:31] 2026-01-10 15:43:58,984 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 10:45:31] 2026-01-10 15:43:58,984 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 10:45:31] 2026-01-10 15:43:58,985 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 10:45:31] 2026-01-10 15:43:58,985 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 10:45:31] 2026-01-10 15:43:58,985 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 10:45:31] 2026-01-10 15:43:58,985 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 10:45:31] 2026-01-10 15:43:58,985 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 10:45:31] 2026-01-10 15:43:58,985 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 10:45:31] 2026-01-10 15:43:58,985 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 10:45:31] 2026-01-10 15:43:58,985 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 10:45:31] 2026-01-10 15:43:58,985 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 10:45:31] 2026-01-10 15:43:58,985 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 10:45:31] 2026-01-10 15:43:58,985 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 10:45:31] 2026-01-10 15:43:58,985 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 10:45:31] 2026-01-10 15:43:58,985 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 10:45:31] 2026-01-10 15:43:58,986 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 10:45:31] 2026-01-10 15:43:58,986 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 10:45:31] 2026-01-10 15:43:58,986 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 10:45:31] 2026-01-10 15:43:58,986 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 10:45:31] 2026-01-10 15:43:58,986 | INFO     | job 6965384398 has completed (purged errors)
[2026-01-10 10:45:31] 2026-01-10 15:43:58,986 | INFO     | overall cleanup function is called
[2026-01-10 10:45:31] 2026-01-10 15:44:00,047 | INFO     | --- collectZombieJob: --- 10, [2575690]
[2026-01-10 10:45:31] 2026-01-10 15:44:00,047 | INFO     | zombie collector waiting for pid 2575690
[2026-01-10 10:45:31] 2026-01-10 15:44:00,047 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 10:45:31] 2026-01-10 15:44:00,047 | INFO     | collected zombie processes
[2026-01-10 10:45:31] 2026-01-10 15:44:00,047 | INFO     | will attempt to kill all subprocesses of pid=2575690
[2026-01-10 10:45:31] 2026-01-10 15:44:01,509 | INFO     | process IDs to be killed: [2575690] (in reverse order)
[2026-01-10 10:45:31] 2026-01-10 15:44:02,114 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 10:45:31] 2026-01-10 15:44:02,114 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 10:45:31] 2026-01-10 15:44:02,209 | INFO     | did not find any defunct processes belonging to 2575690
[2026-01-10 10:45:31] 2026-01-10 15:44:02,304 | INFO     | did not find any defunct processes belonging to 2575690
[2026-01-10 10:45:31] 2026-01-10 15:44:02,305 | INFO     | ready for new job
[2026-01-10 10:45:31] 2026-01-10 15:44:02,305 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 10:45:31] 2026-01-10 15:44:02,306 | INFO     | ***************************************
[2026-01-10 10:45:31] 2026-01-10 15:44:02,307 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 10:45:31] 2026-01-10 15:44:02,309 | INFO     | ***************************************
[2026-01-10 10:45:31] 2026-01-10 15:44:02,309 | INFO     | 
[2026-01-10 10:45:31] 2026-01-10 15:44:02,319 | INFO     | architecture information:
[2026-01-10 10:45:31] 2026-01-10 15:44:02,323 | INFO     | executing command: cat /etc/os-release
[2026-01-10 10:45:31] 2026-01-10 15:44:02,397 | INFO     | cat /etc/os-release:
[2026-01-10 10:45:31] NAME="CentOS Linux"
[2026-01-10 10:45:31] VERSION="7 (Core)"
[2026-01-10 10:45:31] ID="centos"
[2026-01-10 10:45:31] ID_LIKE="rhel fedora"
[2026-01-10 10:45:31] VERSION_ID="7"
[2026-01-10 10:45:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 10:45:31] ANSI_COLOR="0;31"
[2026-01-10 10:45:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 10:45:31] HOME_URL="https://www.centos.org/"
[2026-01-10 10:45:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 10:45:31] 
[2026-01-10 10:45:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 10:45:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 10:45:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 10:45:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 10:45:31] 
[2026-01-10 10:45:31] 2026-01-10 15:44:02,397 | INFO     | ***************************************
[2026-01-10 10:45:31] 2026-01-10 15:44:02,901 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-10 10:45:31] 2026-01-10 15:44:02,965 | INFO     | sufficient remaining disk space (94703190016 B)
[2026-01-10 10:45:31] 2026-01-10 15:44:02,966 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 10:45:31] 2026-01-10 15:44:02,966 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 10:45:31] 2026-01-10 15:44:02,966 | INFO     | update_server=False
[2026-01-10 10:45:31] 2026-01-10 15:44:02,966 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 10:45:31] 2026-01-10 15:44:02,967 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 10:45:31] 2026-01-10 15:44:03,122 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 10:45:31] 2026-01-10 15:44:03,122 | INFO     | aborting loop
[2026-01-10 10:45:31] 2026-01-10 15:44:03,239 | INFO     | all data control threads have been joined
[2026-01-10 10:45:31] 2026-01-10 15:44:03,968 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 10:45:31] 2026-01-10 15:44:03,972 | INFO     | [job] retrieve thread has finished
[2026-01-10 10:45:31] 2026-01-10 15:44:04,033 | INFO     | all payload control threads have been joined
[2026-01-10 10:45:31] 2026-01-10 15:44:04,052 | INFO     | [payload] failed_post thread has finished
[2026-01-10 10:45:31] 2026-01-10 15:44:04,128 | INFO     | [job] job monitor thread has finished
[2026-01-10 10:45:31] 2026-01-10 15:44:04,247 | INFO     | [data] control thread has finished
[2026-01-10 10:45:31] 2026-01-10 15:44:04,265 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 10:45:31] 2026-01-10 15:44:04,309 | INFO     | [data] copytool_in thread has finished
[2026-01-10 10:45:31] 2026-01-10 15:44:04,310 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 10:45:31] 2026-01-10 15:44:04,441 | INFO     | all job control threads have been joined
[2026-01-10 10:45:31] 2026-01-10 15:44:04,576 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 10:45:31] 2026-01-10 15:44:04,632 | INFO     | [job] validate thread has finished
[2026-01-10 10:45:31] 2026-01-10 15:44:04,974 | INFO     | [job] queue monitor thread has finished
[2026-01-10 10:45:31] 2026-01-10 15:44:05,039 | INFO     | [payload] control thread has finished
[2026-01-10 10:45:31] 2026-01-10 15:44:05,247 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 10:45:31] 2026-01-10 15:44:05,248 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 10:45:31] 2026-01-10 15:44:05,448 | INFO     | [job] control thread has finished
[2026-01-10 10:45:31] 2026-01-10 15:44:05,533 | INFO     | [payload] validate_post thread has finished
[2026-01-10 10:45:31] 2026-01-10 15:44:06,284 | INFO     | [data] copytool_out thread has finished
[2026-01-10 10:45:31] 2026-01-10 15:44:06,976 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 10:45:31] 2026-01-10 15:44:31,636 | INFO     | PID=2554847 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 10:45:31] 2026-01-10 15:44:31,636 | INFO     | .. there are 14 such processes running
[2026-01-10 10:45:31] 2026-01-10 15:44:31,637 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 10:45:31] 2026-01-10 15:44:31,637 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 10:45:31] 2026-01-10 15:44:31,637 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 10:45:31] 2026-01-10 15:45:02,141 | INFO     | [monitor] cgroup control has ended
[2026-01-10 10:45:31] 2026-01-10 15:45:04,223 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140411320821568)>', '<ExcThread(monitor, started 140410533967616)>']
[2026-01-10 10:45:31] 2026-01-10 15:45:04,883 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 10:45:31] 2026-01-10 15:45:04,883 | INFO     | [monitor] control thread has ended
[2026-01-10 10:45:31] 2026-01-10 15:45:09,263 | INFO     | all workflow threads have been joined
[2026-01-10 10:45:31] 2026-01-10 15:45:09,263 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 10:45:31] 2026-01-10 15:45:09,291 | INFO     | traces error code: 0
[2026-01-10 10:45:31] 2026-01-10 15:45:09,291 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 10:45:31] 2026-01-10 15:45:10,306 [wrapper] ==== pilot stdout END ====
[2026-01-10 10:45:31] 2026-01-10 15:45:10,350 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 10:45:31] 2026-01-10 15:45:10,393 [wrapper] pilotpid: 2554847
[2026-01-10 10:45:31] 2026-01-10 15:45:10,433 [wrapper] Pilot exit status: 0
[2026-01-10 10:45:31] 2026-01-10 15:45:10,593 [wrapper] pandaids: 6965384398
[2026-01-10 10:45:31] 2026-01-10 15:45:10,738 [wrapper] cleanup supervisor_pilot 2869930 2554848
[2026-01-10 10:45:31] 2026-01-10 15:45:10,741 [wrapper] Test setup, not cleaning
[2026-01-10 10:45:31] 2026-01-10 15:45:10,743 [wrapper] apfmon messages muted
[2026-01-10 10:45:31] 2026-01-10 15:45:10,746 [wrapper] ==== wrapper stdout END ====
[2026-01-10 10:45:31] 2026-01-10 15:45:10,749 [wrapper] ==== wrapper stderr END ====
[2026-01-10 10:45:31]  *** Error codes and diagnostics ***
[2026-01-10 10:45:31]     "exeErrorCode": 0,
[2026-01-10 10:45:31]     "exeErrorDiag": "",
[2026-01-10 10:45:31]     "pilotErrorCode": 0,
[2026-01-10 10:45:31]     "pilotErrorDiag": "",
[2026-01-10 10:45:31]  *** Listing of results directory ***
[2026-01-10 10:45:31] total 432332
[2026-01-10 10:45:31] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:14 pilot3.tar.gz
[2026-01-10 10:45:31] -rwx------. 1 boincer umatlas     36322 Jan 10 08:14 runpilot2-wrapper.sh
[2026-01-10 10:45:31] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:15 queuedata.json
[2026-01-10 10:45:31] -rw-r--r--. 1 boincer umatlas       100 Jan 10 08:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 10:45:31] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 08:23 run_atlas
[2026-01-10 10:45:31] -rw-r--r--. 1 boincer umatlas       105 Jan 10 08:23 job.xml
[2026-01-10 10:45:31] -rw-r--r--. 2 boincer umatlas 392111621 Jan 10 08:23 EVNT.47962006._000111.pool.root.1
[2026-01-10 10:45:31] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:23 start_atlas.sh
[2026-01-10 10:45:31] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 08:23 shared
[2026-01-10 10:45:31] -rw-r--r--. 2 boincer umatlas    592619 Jan 10 08:23 input.tar.gz
[2026-01-10 10:45:31] -rw-r--r--. 1 boincer umatlas         0 Jan 10 08:23 boinc_lockfile
[2026-01-10 10:45:31] -rw-r--r--. 1 boincer umatlas      2891 Jan 10 08:23 pandaJob.out
[2026-01-10 10:45:31] -rw-------. 1 boincer umatlas        57 Jan 10 08:23 setup.sh.local
[2026-01-10 10:45:31] -rw-------. 1 boincer umatlas    989556 Jan 10 08:24 agis_schedconf.cvmfs.json
[2026-01-10 10:45:31] -rw-------. 1 boincer umatlas   1516240 Jan 10 08:24 agis_ddmendpoints.agis.ALL.json
[2026-01-10 10:45:31] drwx------. 5 boincer umatlas      4096 Jan 10 08:24 pilot3
[2026-01-10 10:45:31] -rw-r--r--. 1 boincer umatlas       530 Jan 10 10:14 boinc_task_state.xml
[2026-01-10 10:45:31] -rw-r--r--. 1 boincer umatlas      6878 Jan 10 10:37 init_data.xml
[2026-01-10 10:45:31] -rw-------. 1 boincer umatlas  41675706 Jan 10 10:42 HITS.47962010._002534.pool.root.1
[2026-01-10 10:45:31] -rw-------. 1 boincer umatlas      1035 Jan 10 10:43 memory_monitor_summary.json
[2026-01-10 10:45:31] -rw-------. 1 boincer umatlas   1449217 Jan 10 10:43 log.47962010._002534.job.log.tgz.1
[2026-01-10 10:45:31] -rw-------. 1 boincer umatlas      8582 Jan 10 10:43 heartbeat.json
[2026-01-10 10:45:31] -rw-------. 1 boincer umatlas        95 Jan 10 10:44 pilot_heartbeat.json
[2026-01-10 10:45:31] -rw-------. 1 boincer umatlas      4824 Jan 10 10:45 pilotlog.txt
[2026-01-10 10:45:31] -rw-------. 1 boincer umatlas   1063740 Jan 10 10:45 log.47962010._002534.job.log.1
[2026-01-10 10:45:31] -rw-------. 1 boincer umatlas       353 Jan 10 10:45 output.list
[2026-01-10 10:45:31] -rw-r--r--. 1 boincer umatlas       620 Jan 10 10:45 runtime_log
[2026-01-10 10:45:31] -rw-------. 1 boincer umatlas   2529280 Jan 10 10:45 result.tar.gz
[2026-01-10 10:45:31] -rw-r--r--. 1 boincer umatlas      9354 Jan 10 10:45 runtime_log.err
[2026-01-10 10:45:31] -rw-------. 1 boincer umatlas       655 Jan 10 10:45 2N6MDmayny8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmdbhKDmKU9zbm.diag
[2026-01-10 10:45:31] -rw-r--r--. 1 boincer umatlas        27 Jan 10 10:45 wrapper_checkpoint.txt
[2026-01-10 10:45:31] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 10:45 boinc_mmap_file
[2026-01-10 10:45:31] -rw-r--r--. 1 boincer umatlas      2151 Jan 10 10:45 stderr.txt
[2026-01-10 10:45:31] HITS file was successfully produced:
[2026-01-10 10:45:31] -rw-------. 1 boincer umatlas 41675706 Jan 10 10:42 shared/HITS.pool.root.1
[2026-01-10 10:45:31]  *** Contents of shared directory: ***
[2026-01-10 10:45:31] total 426696
[2026-01-10 10:45:31] -rw-r--r--. 2 boincer umatlas 392111621 Jan 10 08:23 ATLAS.root_0
[2026-01-10 10:45:31] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:23 start_atlas.sh
[2026-01-10 10:45:31] -rw-r--r--. 2 boincer umatlas    592619 Jan 10 08:23 input.tar.gz
[2026-01-10 10:45:31] -rw-------. 1 boincer umatlas  41675706 Jan 10 10:42 HITS.pool.root.1
[2026-01-10 10:45:31] -rw-------. 1 boincer umatlas   2529280 Jan 10 10:45 result.tar.gz
10:45:33 (2545809): run_atlas exited; CPU time 14750.309285
10:45:33 (2545809): called boinc_finish(0)

</stderr_txt>
]]>

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