Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:23:55 (1186091): wrapper (7.7.26015): starting
08:23:55 (1186091): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 08:23:55] Arguments: --nthreads 8
[2026-01-10 08:23:55] Threads: 8
[2026-01-10 08:23:55] Checking for CVMFS
[2026-01-10 08:23:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 08:23:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 08:23:55] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 08:23:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 08:23:56] 2.13.3.0 17216 94770 383680 154981 3 282 23242251 32935936 18942 16776704 0 1350479380 99.635 1314996203 49937 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 08:23:56] CVMFS is ok
[2026-01-10 08:23:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 08:23:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 08:23:56] Further information can be found at the LHC@home message board.
[2026-01-10 08:23:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 08:23:56] Checking for apptainer binary...
[2026-01-10 08:23:56] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 08:23:56] Running /usr/bin/apptainer --version
[2026-01-10 08:23:56] apptainer version 1.4.5-2.el9
[2026-01-10 08:23:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 08:23:56] c7-9-14.aglt2.org
[2026-01-10 08:23:56] apptainer works
[2026-01-10 08:23:56] Set ATHENA_PROC_NUMBER=8
[2026-01-10 08:23:56] Set ATHENA_CORE_NUMBER=8
[2026-01-10 08:23:56] Starting ATLAS job with PandaID=6965384167
[2026-01-10 08:23:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 09:18:42]  *** The last 200 lines of the pilot log: ***
[2026-01-10 09:18:42]  scope=mc16_13TeV
[2026-01-10 09:18:42]  status=None
[2026-01-10 09:18:42]  status_code=0
[2026-01-10 09:18:42]  storage_token=
[2026-01-10 09:18:42]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6965384167/log.47962010._002308.job.log.tgz.1
[2026-01-10 09:18:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/86/c5/log.47962010._002308.job.log.tgz.1
[2026-01-10 09:18:42]  workdir=None
[2026-01-10 09:18:42] ]
[2026-01-10 09:18:42] 2026-01-10 14:17:57,011 | INFO     | transferring file log.47962010._002308.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6965384167/log.47962010._002308.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-10 09:18:42] 2026-01-10 14:17:57,011 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6965384167/log.47962010._002308.job.log.tgz.1 /tmp/boinchome/slots/2/log.47962010._002308.job
[2026-01-10 09:18:42] 2026-01-10 14:17:57,035 | INFO     | adding to output.list: log.47962010._002308.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/86/c5/log.47962010._002308.job.log.tgz.
[2026-01-10 09:18:42] 2026-01-10 14:17:57,035 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 09:18:42] 2026-01-10 14:17:57,035 | INFO     | summary of transferred files:
[2026-01-10 09:18:42] 2026-01-10 14:17:57,036 | INFO     |  -- lfn=log.47962010._002308.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 09:18:42] 2026-01-10 14:17:57,036 | INFO     | stage-out finished correctly
[2026-01-10 09:18:42] 2026-01-10 14:17:57,969 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 09:18:42] 2026-01-10 14:17:58,162 | INFO     | time since job start (3231s) is within the limit (349056.0s)
[2026-01-10 09:18:42] 2026-01-10 14:17:59,805 | INFO     | job 6965384167 has state=finished
[2026-01-10 09:18:42] 2026-01-10 14:17:59,806 | INFO     | preparing for final server update for job 6965384167 in state='finished'
[2026-01-10 09:18:42] 2026-01-10 14:17:59,806 | INFO     | this job has now completed (state=finished)
[2026-01-10 09:18:42] 2026-01-10 14:17:59,806 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 09:18:42] 2026-01-10 14:17:59,806 | INFO     | log transfer has been attempted: DONE
[2026-01-10 09:18:42] 2026-01-10 14:17:59,806 | INFO     | job 6965384167 has finished - writing final server update
[2026-01-10 09:18:42] 2026-01-10 14:17:59,806 | INFO     | total number of processed events: 50 (read)
[2026-01-10 09:18:42] 2026-01-10 14:17:59,813 | INFO     | executing command: lscpu
[2026-01-10 09:18:42] 2026-01-10 14:17:59,920 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 09:18:42] 2026-01-10 14:18:00,173 | INFO     | time since job start (3233s) is within the limit (349056.0s)
[2026-01-10 09:18:42] 2026-01-10 14:18:00,993 | WARNING  | process 1220136 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 09:18:42] 2026-01-10 14:18:00,993 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6965384167/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 09:18:42] 2026-01-10 14:18:01,995 | INFO     | number of running child processes to parent process 1220136: 1
[2026-01-10 09:18:42] 2026-01-10 14:18:01,995 | INFO     | maximum number of monitored processes: 16
[2026-01-10 09:18:42] 2026-01-10 14:18:02,180 | INFO     | time since job start (3235s) is within the limit (349056.0s)
[2026-01-10 09:18:42] 2026-01-10 14:18:04,500 | INFO     | monitor loop #218: job 0:6965384167 is in state 'finished'
[2026-01-10 09:18:42] 2026-01-10 14:18:04,500 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 09:18:42] 2026-01-10 14:18:04,505 | INFO     | PID=1199283 has CPU usage=11.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-10 09:18:42] 2026-01-10 14:18:04,505 | INFO     | .. there are 26 such processes running
[2026-01-10 09:18:42] 2026-01-10 14:18:05,506 | INFO     | time since job start (3238s) is within the limit (349056.0s)
[2026-01-10 09:18:42] 2026-01-10 14:18:07,005 | INFO     | monitor loop #219: job 0:6965384167 is in state 'finished'
[2026-01-10 09:18:42] 2026-01-10 14:18:07,005 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 09:18:42] 2026-01-10 14:18:07,513 | INFO     | time since job start (3240s) is within the limit (349056.0s)
[2026-01-10 09:18:42] 2026-01-10 14:18:07,577 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-10 09:18:42] 2026-01-10 14:18:07,582 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.272953124997
[2026-01-10 09:18:42] 2026-01-10 14:18:07,596 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6965384167/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 09:18:42] 2026-01-10 14:18:07,597 | INFO     | extracted standard info from prmon json
[2026-01-10 09:18:42] 2026-01-10 14:18:07,597 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 09:18:42] 2026-01-10 14:18:07,597 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 09:18:42] 2026-01-10 14:18:07,598 | INFO     | fitting pss+swap vs Time
[2026-01-10 09:18:42] 2026-01-10 14:18:07,598 | INFO     | sum of square deviations: 30186206.804347828
[2026-01-10 09:18:42] 2026-01-10 14:18:07,598 | INFO     | sum of deviations: -1182584989.7608693
[2026-01-10 09:18:42] 2026-01-10 14:18:07,598 | INFO     | mean x: 1768053152.0652175
[2026-01-10 09:18:42] 2026-01-10 14:18:07,598 | INFO     | mean y: 2553463.586956522
[2026-01-10 09:18:42] 2026-01-10 14:18:07,598 | INFO     | intersect: 69268398366.98045
[2026-01-10 09:18:42] 2026-01-10 14:18:07,598 | INFO     | chi2: 0.2578267655838731
[2026-01-10 09:18:42] 2026-01-10 14:18:07,598 | INFO     | current memory leak: -39.18 B/s (using 46 data points, chi2=0.26)
[2026-01-10 09:18:42] 2026-01-10 14:18:07,598 | INFO     | could have reported an average CPU frequency of 3796 MHz (5 samples)
[2026-01-10 09:18:42] 2026-01-10 14:18:07,599 | INFO     | ..............................
[2026-01-10 09:18:42] 2026-01-10 14:18:07,599 | INFO     | . Timing measurements:
[2026-01-10 09:18:42] 2026-01-10 14:18:07,599 | INFO     | . get job = 0 s
[2026-01-10 09:18:42] 2026-01-10 14:18:07,599 | INFO     | . initial setup = 2 s
[2026-01-10 09:18:42] 2026-01-10 14:18:07,599 | INFO     | . payload setup = 6 s
[2026-01-10 09:18:42] 2026-01-10 14:18:07,599 | INFO     | . stage-in = 0 s
[2026-01-10 09:18:42] 2026-01-10 14:18:07,599 | INFO     | . payload execution = 3203 s
[2026-01-10 09:18:42] 2026-01-10 14:18:07,599 | INFO     | . stage-out = 1 s
[2026-01-10 09:18:42] 2026-01-10 14:18:07,599 | INFO     | . log creation = 0 s
[2026-01-10 09:18:42] 2026-01-10 14:18:07,599 | INFO     | ..............................
[2026-01-10 09:18:42] 2026-01-10 14:18:07,646 | INFO     | 
[2026-01-10 09:18:42] 2026-01-10 14:18:07,647 | INFO     | job summary report
[2026-01-10 09:18:42] 2026-01-10 14:18:07,647 | INFO     | --------------------------------------------------
[2026-01-10 09:18:42] 2026-01-10 14:18:07,647 | INFO     | PanDA job id: 6965384167
[2026-01-10 09:18:42] 2026-01-10 14:18:07,647 | INFO     | task id: 47962010
[2026-01-10 09:18:42] 2026-01-10 14:18:07,647 | INFO     | errors: (none)
[2026-01-10 09:18:42] 2026-01-10 14:18:07,647 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 09:18:42] 2026-01-10 14:18:07,647 | INFO     | pilot state: finished 
[2026-01-10 09:18:42] 2026-01-10 14:18:07,647 | INFO     | transexitcode: 0
[2026-01-10 09:18:42] 2026-01-10 14:18:07,647 | INFO     | exeerrorcode: 0
[2026-01-10 09:18:42] 2026-01-10 14:18:07,647 | INFO     | exeerrordiag: 
[2026-01-10 09:18:42] 2026-01-10 14:18:07,647 | INFO     | exitcode: 0
[2026-01-10 09:18:42] 2026-01-10 14:18:07,647 | INFO     | exitmsg: OK
[2026-01-10 09:18:42] 2026-01-10 14:18:07,647 | INFO     | cpuconsumptiontime: 7977 s
[2026-01-10 09:18:42] 2026-01-10 14:18:07,647 | INFO     | nevents: 50
[2026-01-10 09:18:42] 2026-01-10 14:18:07,647 | INFO     | neventsw: 0
[2026-01-10 09:18:42] 2026-01-10 14:18:07,647 | INFO     | pid: 1220136
[2026-01-10 09:18:42] 2026-01-10 14:18:07,647 | INFO     | pgrp: 1220136
[2026-01-10 09:18:42] 2026-01-10 14:18:07,647 | INFO     | corecount: 8
[2026-01-10 09:18:42] 2026-01-10 14:18:07,647 | INFO     | event service: False
[2026-01-10 09:18:42] 2026-01-10 14:18:07,647 | INFO     | sizes: {0: 2284398, 1: 2284597, 5: 2284859, 11: 2284915, 3212: 2311336, 3213: 2311335, 3214: 2320513, 3215: 2320569, 3225: 2320847}
[2026-01-10 09:18:42] 2026-01-10 14:18:07,647 | INFO     | --------------------------------------------------
[2026-01-10 09:18:42] 2026-01-10 14:18:07,647 | INFO     | 
[2026-01-10 09:18:42] 2026-01-10 14:18:07,647 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-10 09:18:42] 2026-01-10 14:18:07,682 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 09:18:42] 2026-01-10 14:18:07,682 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 09:18:42] 2026-01-10 14:18:07,682 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 09:18:42] 2026-01-10 14:18:07,682 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 09:18:42] 2026-01-10 14:18:07,682 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 09:18:42] 2026-01-10 14:18:07,682 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 09:18:42] 2026-01-10 14:18:07,682 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 09:18:42] 2026-01-10 14:18:07,682 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 09:18:42] 2026-01-10 14:18:07,682 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 09:18:42] 2026-01-10 14:18:07,682 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 09:18:42] 2026-01-10 14:18:07,682 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 09:18:42] 2026-01-10 14:18:07,682 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 09:18:42] 2026-01-10 14:18:07,682 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 09:18:42] 2026-01-10 14:18:07,682 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 09:18:42] 2026-01-10 14:18:07,682 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 09:18:42] 2026-01-10 14:18:07,682 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 09:18:42] 2026-01-10 14:18:07,682 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 09:18:42] 2026-01-10 14:18:07,682 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 09:18:42] 2026-01-10 14:18:07,683 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 09:18:42] 2026-01-10 14:18:07,683 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 09:18:42] 2026-01-10 14:18:07,683 | INFO     | job 6965384167 has completed (purged errors)
[2026-01-10 09:18:42] 2026-01-10 14:18:07,683 | INFO     | overall cleanup function is called
[2026-01-10 09:18:42] 2026-01-10 14:18:08,700 | INFO     | --- collectZombieJob: --- 10, [1220136]
[2026-01-10 09:18:42] 2026-01-10 14:18:08,700 | INFO     | zombie collector waiting for pid 1220136
[2026-01-10 09:18:42] 2026-01-10 14:18:08,701 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 09:18:42] 2026-01-10 14:18:08,701 | INFO     | collected zombie processes
[2026-01-10 09:18:42] 2026-01-10 14:18:08,701 | INFO     | will attempt to kill all subprocesses of pid=1220136
[2026-01-10 09:18:42] 2026-01-10 14:18:09,608 | INFO     | process IDs to be killed: [1220136] (in reverse order)
[2026-01-10 09:18:42] 2026-01-10 14:18:09,779 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 09:18:42] 2026-01-10 14:18:09,779 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 09:18:42] 2026-01-10 14:18:09,802 | INFO     | did not find any defunct processes belonging to 1220136
[2026-01-10 09:18:42] 2026-01-10 14:18:09,824 | INFO     | did not find any defunct processes belonging to 1220136
[2026-01-10 09:18:42] 2026-01-10 14:18:09,824 | INFO     | ready for new job
[2026-01-10 09:18:42] 2026-01-10 14:18:09,825 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 09:18:42] 2026-01-10 14:18:09,826 | INFO     | ***************************************
[2026-01-10 09:18:42] 2026-01-10 14:18:09,827 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 09:18:42] 2026-01-10 14:18:09,827 | INFO     | ***************************************
[2026-01-10 09:18:42] 2026-01-10 14:18:09,827 | INFO     | 
[2026-01-10 09:18:42] 2026-01-10 14:18:09,831 | INFO     | architecture information:
[2026-01-10 09:18:42] 2026-01-10 14:18:09,837 | INFO     | executing command: cat /etc/os-release
[2026-01-10 09:18:42] 2026-01-10 14:18:09,877 | INFO     | cat /etc/os-release:
[2026-01-10 09:18:42] NAME="CentOS Linux"
[2026-01-10 09:18:42] VERSION="7 (Core)"
[2026-01-10 09:18:42] ID="centos"
[2026-01-10 09:18:42] ID_LIKE="rhel fedora"
[2026-01-10 09:18:42] VERSION_ID="7"
[2026-01-10 09:18:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 09:18:42] ANSI_COLOR="0;31"
[2026-01-10 09:18:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 09:18:42] HOME_URL="https://www.centos.org/"
[2026-01-10 09:18:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 09:18:42] 
[2026-01-10 09:18:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 09:18:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 09:18:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 09:18:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 09:18:42] 
[2026-01-10 09:18:42] 2026-01-10 14:18:09,877 | INFO     | ***************************************
[2026-01-10 09:18:42] 2026-01-10 14:18:10,380 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-10 09:18:42] 2026-01-10 14:18:10,433 | INFO     | sufficient remaining disk space (72998715392 B)
[2026-01-10 09:18:42] 2026-01-10 14:18:10,434 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 09:18:42] 2026-01-10 14:18:10,434 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 09:18:42] 2026-01-10 14:18:10,435 | INFO     | update_server=False
[2026-01-10 09:18:42] 2026-01-10 14:18:10,435 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 09:18:42] 2026-01-10 14:18:10,435 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 09:18:42] 2026-01-10 14:18:10,516 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:18:42] 2026-01-10 14:18:10,516 | INFO     | aborting loop
[2026-01-10 09:18:42] 2026-01-10 14:18:11,233 | INFO     | all data control threads have been joined
[2026-01-10 09:18:42] 2026-01-10 14:18:11,438 | INFO     | all payload control threads have been joined
[2026-01-10 09:18:42] 2026-01-10 14:18:11,440 | INFO     | [job] retrieve thread has finished
[2026-01-10 09:18:42] 2026-01-10 14:18:11,522 | INFO     | [job] job monitor thread has finished
[2026-01-10 09:18:42] 2026-01-10 14:18:11,527 | INFO     | all job control threads have been joined
[2026-01-10 09:18:42] 2026-01-10 14:18:11,533 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 09:18:42] 2026-01-10 14:18:11,595 | INFO     | [job] validate thread has finished
[2026-01-10 09:18:42] 2026-01-10 14:18:12,116 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 09:18:42] 2026-01-10 14:18:12,122 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 09:18:42] 2026-01-10 14:18:12,239 | INFO     | [monitor] cgroup control has ended
[2026-01-10 09:18:42] 2026-01-10 14:18:12,240 | INFO     | [data] control thread has finished
[2026-01-10 09:18:42] 2026-01-10 14:18:12,298 | INFO     | [data] copytool_in thread has finished
[2026-01-10 09:18:42] 2026-01-10 14:18:12,442 | INFO     | [data] copytool_out thread has finished
[2026-01-10 09:18:42] 2026-01-10 14:18:12,444 | INFO     | [payload] control thread has finished
[2026-01-10 09:18:42] 2026-01-10 14:18:12,533 | INFO     | [job] control thread has finished
[2026-01-10 09:18:42] 2026-01-10 14:18:12,602 | INFO     | [payload] validate_post thread has finished
[2026-01-10 09:18:42] 2026-01-10 14:18:12,661 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:18:42] 2026-01-10 14:18:12,698 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 09:18:42] 2026-01-10 14:18:13,010 | INFO     | [payload] failed_post thread has finished
[2026-01-10 09:18:42] 2026-01-10 14:18:13,175 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 09:18:42] 2026-01-10 14:18:13,667 | INFO     | [job] queue monitor thread has finished
[2026-01-10 09:18:42] 2026-01-10 14:18:17,183 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 09:18:42] 2026-01-10 14:18:18,441 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140439969445696)>', '<ExcThread(monitor, started 140439608858368)>']
[2026-01-10 09:18:42] 2026-01-10 14:18:23,467 | INFO     | all workflow threads have been joined
[2026-01-10 09:18:42] 2026-01-10 14:18:23,467 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 09:18:42] 2026-01-10 14:18:23,468 | INFO     | traces error code: 0
[2026-01-10 09:18:42] 2026-01-10 14:18:23,468 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 09:18:42] 2026-01-10 14:18:41,390 | INFO     | PID=1199283 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 09:18:42] 2026-01-10 14:18:41,390 | INFO     | .. there are 26 such processes running
[2026-01-10 09:18:42] 2026-01-10 14:18:41,390 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 09:18:42] 2026-01-10 14:18:41,391 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 09:18:42] 2026-01-10 14:18:41,391 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 09:18:42] 2026-01-10 14:18:41,391 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 09:18:42] 2026-01-10 14:18:41,391 | INFO     | [monitor] control thread has ended
[2026-01-10 09:18:42] 2026-01-10 14:18:41,591 [wrapper] ==== pilot stdout END ====
[2026-01-10 09:18:42] 2026-01-10 14:18:41,600 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 09:18:42] 2026-01-10 14:18:41,606 [wrapper] pilotpid: 1199283
[2026-01-10 09:18:42] 2026-01-10 14:18:41,631 [wrapper] Pilot exit status: 0
[2026-01-10 09:18:42] 2026-01-10 14:18:41,755 [wrapper] pandaids: 6965384167
[2026-01-10 09:18:42] 2026-01-10 14:18:41,874 [wrapper] cleanup supervisor_pilot 1741181 1199285
[2026-01-10 09:18:42] 2026-01-10 14:18:41,879 [wrapper] Test setup, not cleaning
[2026-01-10 09:18:42] 2026-01-10 14:18:41,884 [wrapper] apfmon messages muted
[2026-01-10 09:18:42] 2026-01-10 14:18:41,886 [wrapper] ==== wrapper stdout END ====
[2026-01-10 09:18:42] 2026-01-10 14:18:41,888 [wrapper] ==== wrapper stderr END ====
[2026-01-10 09:18:42]  *** Error codes and diagnostics ***
[2026-01-10 09:18:42]     "exeErrorCode": 0,
[2026-01-10 09:18:42]     "exeErrorDiag": "",
[2026-01-10 09:18:42]     "pilotErrorCode": 0,
[2026-01-10 09:18:42]     "pilotErrorDiag": "",
[2026-01-10 09:18:42]  *** Listing of results directory ***
[2026-01-10 09:18:42] total 432832
[2026-01-10 09:18:42] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:14 pilot3.tar.gz
[2026-01-10 09:18:42] -rwx------. 1 boincer umatlas     36322 Jan 10 08:14 runpilot2-wrapper.sh
[2026-01-10 09:18:42] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:15 queuedata.json
[2026-01-10 09:18:42] -rw-r--r--. 1 boincer umatlas       100 Jan 10 08:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 09:18:42] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 08:23 run_atlas
[2026-01-10 09:18:42] -rw-r--r--. 1 boincer umatlas       105 Jan 10 08:23 job.xml
[2026-01-10 09:18:42] -rw-r--r--. 2 boincer umatlas 393071051 Jan 10 08:23 EVNT.47962006._000086.pool.root.1
[2026-01-10 09:18:42] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:23 start_atlas.sh
[2026-01-10 09:18:42] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 08:23 shared
[2026-01-10 09:18:42] -rw-r--r--. 2 boincer umatlas    592613 Jan 10 08:23 input.tar.gz
[2026-01-10 09:18:42] -rw-r--r--. 1 boincer umatlas         0 Jan 10 08:23 boinc_lockfile
[2026-01-10 09:18:42] -rw-r--r--. 1 boincer umatlas      2890 Jan 10 08:23 pandaJob.out
[2026-01-10 09:18:42] -rw-------. 1 boincer umatlas        57 Jan 10 08:23 setup.sh.local
[2026-01-10 09:18:42] -rw-------. 1 boincer umatlas    989556 Jan 10 08:24 agis_schedconf.cvmfs.json
[2026-01-10 09:18:42] -rw-------. 1 boincer umatlas   1516240 Jan 10 08:24 agis_ddmendpoints.agis.ALL.json
[2026-01-10 09:18:42] drwx------. 5 boincer umatlas      4096 Jan 10 08:24 pilot3
[2026-01-10 09:18:42] -rw-r--r--. 1 boincer umatlas       528 Jan 10 09:11 boinc_task_state.xml
[2026-01-10 09:18:42] -rw-r--r--. 1 boincer umatlas      7169 Jan 10 09:12 init_data.xml
[2026-01-10 09:18:42] -rw-------. 1 boincer umatlas  42955776 Jan 10 09:17 HITS.47962010._002308.pool.root.1
[2026-01-10 09:18:42] -rw-------. 1 boincer umatlas      1034 Jan 10 09:17 memory_monitor_summary.json
[2026-01-10 09:18:42] -rw-------. 1 boincer umatlas   1155066 Jan 10 09:17 log.47962010._002308.job.log.tgz.1
[2026-01-10 09:18:42] -rw-------. 1 boincer umatlas        95 Jan 10 09:17 pilot_heartbeat.json
[2026-01-10 09:18:42] -rw-------. 1 boincer umatlas      8534 Jan 10 09:18 heartbeat.json
[2026-01-10 09:18:42] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 09:18 boinc_mmap_file
[2026-01-10 09:18:42] -rw-r--r--. 1 boincer umatlas        26 Jan 10 09:18 wrapper_checkpoint.txt
[2026-01-10 09:18:42] -rw-------. 1 boincer umatlas       823 Jan 10 09:18 pilotlog.txt
[2026-01-10 09:18:42] -rw-------. 1 boincer umatlas    485662 Jan 10 09:18 log.47962010._002308.job.log.1
[2026-01-10 09:18:42] -rw-------. 1 boincer umatlas       353 Jan 10 09:18 output.list
[2026-01-10 09:18:42] -rw-r--r--. 1 boincer umatlas       620 Jan 10 09:18 runtime_log
[2026-01-10 09:18:42] -rw-------. 1 boincer umatlas   1658880 Jan 10 09:18 result.tar.gz
[2026-01-10 09:18:42] -rw-------. 1 boincer umatlas       650 Jan 10 09:18 SI9KDmSyny8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQqmKDm6QE0No.diag
[2026-01-10 09:18:42] -rw-r--r--. 1 boincer umatlas      9337 Jan 10 09:18 runtime_log.err
[2026-01-10 09:18:42] -rw-r--r--. 1 boincer umatlas     22172 Jan 10 09:18 stderr.txt
[2026-01-10 09:18:42] HITS file was successfully produced:
[2026-01-10 09:18:42] -rw-------. 1 boincer umatlas 42955776 Jan 10 09:17 shared/HITS.pool.root.1
[2026-01-10 09:18:42]  *** Contents of shared directory: ***
[2026-01-10 09:18:42] total 428032
[2026-01-10 09:18:42] -rw-r--r--. 2 boincer umatlas 393071051 Jan 10 08:23 ATLAS.root_0
[2026-01-10 09:18:42] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:23 start_atlas.sh
[2026-01-10 09:18:42] -rw-r--r--. 2 boincer umatlas    592613 Jan 10 08:23 input.tar.gz
[2026-01-10 09:18:42] -rw-------. 1 boincer umatlas  42955776 Jan 10 09:17 HITS.pool.root.1
[2026-01-10 09:18:42] -rw-------. 1 boincer umatlas   1658880 Jan 10 09:18 result.tar.gz
09:18:43 (1186091): run_atlas exited; CPU time 7995.381743
09:18:43 (1186091): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN