Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:22:49 (3198525): wrapper (7.7.26015): starting
08:22:49 (3198525): wrapper: running run_atlas (--nthreads 11)
[2026-01-10 08:22:49] Arguments: --nthreads 11
[2026-01-10 08:22:49] Threads: 11
[2026-01-10 08:22:49] Checking for CVMFS
[2026-01-10 08:22:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 08:22:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 08:22:49] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 08:22:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 08:22:50] 2.13.3.0 2033223 18397 177944 154981 3 129 30977008 40960000 16004 16776704 0 72487023 99.619 76595825 35575 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 08:22:50] CVMFS is ok
[2026-01-10 08:22:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 08:22:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 08:22:50] Further information can be found at the LHC@home message board.
[2026-01-10 08:22:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 08:22:50] Checking for apptainer binary...
[2026-01-10 08:22:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 08:22:50] Running /usr/bin/apptainer --version
[2026-01-10 08:22:50] apptainer version 1.4.5-2.el9
[2026-01-10 08:22:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 08:22:50] c-212-17.aglt2.org
[2026-01-10 08:22:50] apptainer works
[2026-01-10 08:22:50] Set ATHENA_PROC_NUMBER=11
[2026-01-10 08:22:50] Set ATHENA_CORE_NUMBER=11
[2026-01-10 08:22:50] Starting ATLAS job with PandaID=6965384100
[2026-01-10 08:22:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 09:04:38]  *** The last 200 lines of the pilot log: ***
[2026-01-10 09:04:38]  workdir=None
[2026-01-10 09:04:38] ]
[2026-01-10 09:04:38] 2026-01-10 14:03:34,982 | INFO     | transferring file log.47962010._002241.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6965384100/log.47962010._002241.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-10 09:04:38] 2026-01-10 14:03:34,982 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6965384100/log.47962010._002241.job.log.tgz.1 /tmp/boinchome/slots/1/log.47962010._002241.job
[2026-01-10 09:04:38] 2026-01-10 14:03:35,063 | INFO     | adding to output.list: log.47962010._002241.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/06/8c/log.47962010._002241.job.log.tgz.
[2026-01-10 09:04:38] 2026-01-10 14:03:35,064 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 09:04:38] 2026-01-10 14:03:35,064 | INFO     | summary of transferred files:
[2026-01-10 09:04:38] 2026-01-10 14:03:35,064 | INFO     |  -- lfn=log.47962010._002241.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 09:04:38] 2026-01-10 14:03:35,064 | INFO     | stage-out finished correctly
[2026-01-10 09:04:38] 2026-01-10 14:03:35,153 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 09:04:38] 2026-01-10 14:03:35,229 | INFO     | job 6965384100 has state=finished
[2026-01-10 09:04:38] 2026-01-10 14:03:35,229 | INFO     | preparing for final server update for job 6965384100 in state='finished'
[2026-01-10 09:04:38] 2026-01-10 14:03:35,229 | INFO     | this job has now completed (state=finished)
[2026-01-10 09:04:38] 2026-01-10 14:03:35,229 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 09:04:38] 2026-01-10 14:03:35,229 | INFO     | log transfer has been attempted: DONE
[2026-01-10 09:04:38] 2026-01-10 14:03:35,230 | INFO     | job 6965384100 has finished - writing final server update
[2026-01-10 09:04:38] 2026-01-10 14:03:35,230 | INFO     | total number of processed events: 50 (read)
[2026-01-10 09:04:38] 2026-01-10 14:03:35,231 | INFO     | executing command: lscpu
[2026-01-10 09:04:38] 2026-01-10 14:03:35,348 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 09:04:38] 2026-01-10 14:03:36,504 | INFO     | PID=3204346 has CPU usage=10.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-10 09:04:38] 2026-01-10 14:03:36,504 | INFO     | .. there are 16 such processes running
[2026-01-10 09:04:38] 2026-01-10 14:03:37,505 | INFO     | time since job start (2410s) is within the limit (349056.0s)
[2026-01-10 09:04:38] 2026-01-10 14:03:37,658 | WARNING  | process 3217057 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 09:04:38] 2026-01-10 14:03:37,658 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6965384100/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 09:04:38] 2026-01-10 14:03:38,043 | INFO     | number of running child processes to parent process 3217057: 1
[2026-01-10 09:04:38] 2026-01-10 14:03:38,043 | INFO     | maximum number of monitored processes: 19
[2026-01-10 09:04:38] 2026-01-10 14:03:39,519 | INFO     | time since job start (2412s) is within the limit (349056.0s)
[2026-01-10 09:04:38] 2026-01-10 14:03:40,548 | INFO     | monitor loop #168: job 0:6965384100 is in state 'finished'
[2026-01-10 09:04:38] 2026-01-10 14:03:40,548 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 09:04:38] 2026-01-10 14:03:41,528 | INFO     | time since job start (2414s) is within the limit (349056.0s)
[2026-01-10 09:04:38] 2026-01-10 14:03:43,053 | INFO     | monitor loop #169: job 0:6965384100 is in state 'finished'
[2026-01-10 09:04:38] 2026-01-10 14:03:43,053 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 09:04:38] 2026-01-10 14:03:43,537 | INFO     | time since job start (2416s) is within the limit (349056.0s)
[2026-01-10 09:04:38] 2026-01-10 14:03:45,543 | INFO     | time since job start (2418s) is within the limit (349056.0s)
[2026-01-10 09:04:38] 2026-01-10 14:03:45,559 | INFO     | monitor loop #170: job 0:6965384100 is in state 'finished'
[2026-01-10 09:04:38] 2026-01-10 14:03:45,559 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 09:04:38] 2026-01-10 14:03:47,569 | INFO     | time since job start (2420s) is within the limit (349056.0s)
[2026-01-10 09:04:38] 2026-01-10 14:03:48,064 | INFO     | monitor loop #171: job 0:6965384100 is in state 'finished'
[2026-01-10 09:04:38] 2026-01-10 14:03:48,064 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 09:04:38] 2026-01-10 14:03:48,920 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 09:04:38] 2026-01-10 14:03:48,933 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3268.3978645833345
[2026-01-10 09:04:38] 2026-01-10 14:03:48,946 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6965384100/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 09:04:38] 2026-01-10 14:03:48,946 | INFO     | extracted standard info from prmon json
[2026-01-10 09:04:38] 2026-01-10 14:03:48,946 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 09:04:38] 2026-01-10 14:03:48,946 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 09:04:38] 2026-01-10 14:03:48,947 | INFO     | fitting pss+swap vs Time
[2026-01-10 09:04:38] 2026-01-10 14:03:48,947 | INFO     | sum of square deviations: 10157637.5
[2026-01-10 09:04:38] 2026-01-10 14:03:48,948 | INFO     | sum of deviations: -1667428765.25
[2026-01-10 09:04:38] 2026-01-10 14:03:48,948 | INFO     | mean x: 1768052740.625
[2026-01-10 09:04:38] 2026-01-10 14:03:48,948 | INFO     | mean y: 2895282.8125
[2026-01-10 09:04:38] 2026-01-10 14:03:48,948 | INFO     | intersect: 290237902999.6386
[2026-01-10 09:04:38] 2026-01-10 14:03:48,948 | INFO     | chi2: 0.42455321836463056
[2026-01-10 09:04:38] 2026-01-10 14:03:48,949 | INFO     | current memory leak: -164.16 B/s (using 32 data points, chi2=0.42)
[2026-01-10 09:04:38] 2026-01-10 14:03:48,949 | INFO     | could have reported an average CPU frequency of 3282 MHz (5 samples)
[2026-01-10 09:04:38] 2026-01-10 14:03:48,949 | INFO     | ..............................
[2026-01-10 09:04:38] 2026-01-10 14:03:48,949 | INFO     | . Timing measurements:
[2026-01-10 09:04:38] 2026-01-10 14:03:48,949 | INFO     | . get job = 0 s
[2026-01-10 09:04:38] 2026-01-10 14:03:48,949 | INFO     | . initial setup = 2 s
[2026-01-10 09:04:38] 2026-01-10 14:03:48,949 | INFO     | . payload setup = 27 s
[2026-01-10 09:04:38] 2026-01-10 14:03:48,949 | INFO     | . stage-in = 0 s
[2026-01-10 09:04:38] 2026-01-10 14:03:48,949 | INFO     | . payload execution = 2335 s
[2026-01-10 09:04:38] 2026-01-10 14:03:48,949 | INFO     | . stage-out = 1 s
[2026-01-10 09:04:38] 2026-01-10 14:03:48,949 | INFO     | . log creation = 0 s
[2026-01-10 09:04:38] 2026-01-10 14:03:48,949 | INFO     | ..............................
[2026-01-10 09:04:38] 2026-01-10 14:03:49,171 | INFO     | 
[2026-01-10 09:04:38] 2026-01-10 14:03:49,171 | INFO     | job summary report
[2026-01-10 09:04:38] 2026-01-10 14:03:49,171 | INFO     | --------------------------------------------------
[2026-01-10 09:04:38] 2026-01-10 14:03:49,171 | INFO     | PanDA job id: 6965384100
[2026-01-10 09:04:38] 2026-01-10 14:03:49,171 | INFO     | task id: 47962010
[2026-01-10 09:04:38] 2026-01-10 14:03:49,171 | INFO     | errors: (none)
[2026-01-10 09:04:38] 2026-01-10 14:03:49,171 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 09:04:38] 2026-01-10 14:03:49,171 | INFO     | pilot state: finished 
[2026-01-10 09:04:38] 2026-01-10 14:03:49,171 | INFO     | transexitcode: 0
[2026-01-10 09:04:38] 2026-01-10 14:03:49,171 | INFO     | exeerrorcode: 0
[2026-01-10 09:04:38] 2026-01-10 14:03:49,172 | INFO     | exeerrordiag: 
[2026-01-10 09:04:38] 2026-01-10 14:03:49,172 | INFO     | exitcode: 0
[2026-01-10 09:04:38] 2026-01-10 14:03:49,172 | INFO     | exitmsg: OK
[2026-01-10 09:04:38] 2026-01-10 14:03:49,172 | INFO     | cpuconsumptiontime: 11356 s
[2026-01-10 09:04:38] 2026-01-10 14:03:49,172 | INFO     | nevents: 50
[2026-01-10 09:04:38] 2026-01-10 14:03:49,172 | INFO     | neventsw: 0
[2026-01-10 09:04:38] 2026-01-10 14:03:49,172 | INFO     | pid: 3217057
[2026-01-10 09:04:38] 2026-01-10 14:03:49,172 | INFO     | pgrp: 3217057
[2026-01-10 09:04:38] 2026-01-10 14:03:49,172 | INFO     | corecount: 11
[2026-01-10 09:04:38] 2026-01-10 14:03:49,172 | INFO     | event service: False
[2026-01-10 09:04:38] 2026-01-10 14:03:49,172 | INFO     | sizes: {0: 2284342, 1: 2284426, 2: 2284625, 13: 2284625, 16: 2284943, 24: 2284971, 2368: 2310973, 2371: 2320023, 2385: 2320245}
[2026-01-10 09:04:38] 2026-01-10 14:03:49,172 | INFO     | --------------------------------------------------
[2026-01-10 09:04:38] 2026-01-10 14:03:49,172 | INFO     | 
[2026-01-10 09:04:38] 2026-01-10 14:03:49,172 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-10 09:04:38] 2026-01-10 14:03:49,299 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:49,302 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:49,302 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:49,302 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:49,303 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:49,303 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:49,303 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:49,303 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:49,303 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:49,303 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:49,303 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:49,303 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:49,303 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:49,303 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:49,303 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:49,303 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:49,304 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:49,304 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 09:04:38] 2026-01-10 14:03:49,304 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:49,308 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 09:04:38] 2026-01-10 14:03:49,308 | INFO     | job 6965384100 has completed (purged errors)
[2026-01-10 09:04:38] 2026-01-10 14:03:49,308 | INFO     | overall cleanup function is called
[2026-01-10 09:04:38] 2026-01-10 14:03:50,339 | INFO     | --- collectZombieJob: --- 10, [3217057]
[2026-01-10 09:04:38] 2026-01-10 14:03:50,339 | INFO     | zombie collector waiting for pid 3217057
[2026-01-10 09:04:38] 2026-01-10 14:03:50,339 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 09:04:38] 2026-01-10 14:03:50,339 | INFO     | collected zombie processes
[2026-01-10 09:04:38] 2026-01-10 14:03:50,339 | INFO     | will attempt to kill all subprocesses of pid=3217057
[2026-01-10 09:04:38] 2026-01-10 14:03:51,058 | INFO     | process IDs to be killed: [3217057] (in reverse order)
[2026-01-10 09:04:38] 2026-01-10 14:03:51,462 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 09:04:38] 2026-01-10 14:03:51,462 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 09:04:38] 2026-01-10 14:03:51,481 | INFO     | did not find any defunct processes belonging to 3217057
[2026-01-10 09:04:38] 2026-01-10 14:03:51,501 | INFO     | did not find any defunct processes belonging to 3217057
[2026-01-10 09:04:38] 2026-01-10 14:03:51,501 | INFO     | ready for new job
[2026-01-10 09:04:38] 2026-01-10 14:03:51,501 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 09:04:38] 2026-01-10 14:03:51,502 | INFO     | ***************************************
[2026-01-10 09:04:38] 2026-01-10 14:03:51,503 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 09:04:38] 2026-01-10 14:03:51,503 | INFO     | ***************************************
[2026-01-10 09:04:38] 2026-01-10 14:03:51,503 | INFO     | 
[2026-01-10 09:04:38] 2026-01-10 14:03:51,507 | INFO     | architecture information:
[2026-01-10 09:04:38] 2026-01-10 14:03:51,508 | INFO     | executing command: cat /etc/os-release
[2026-01-10 09:04:38] 2026-01-10 14:03:51,525 | INFO     | cat /etc/os-release:
[2026-01-10 09:04:38] NAME="CentOS Linux"
[2026-01-10 09:04:38] VERSION="7 (Core)"
[2026-01-10 09:04:38] ID="centos"
[2026-01-10 09:04:38] ID_LIKE="rhel fedora"
[2026-01-10 09:04:38] VERSION_ID="7"
[2026-01-10 09:04:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 09:04:38] ANSI_COLOR="0;31"
[2026-01-10 09:04:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 09:04:38] HOME_URL="https://www.centos.org/"
[2026-01-10 09:04:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 09:04:38] 
[2026-01-10 09:04:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 09:04:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 09:04:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 09:04:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 09:04:38] 
[2026-01-10 09:04:38] 2026-01-10 14:03:51,526 | INFO     | ***************************************
[2026-01-10 09:04:38] 2026-01-10 14:03:52,029 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-10 09:04:38] 2026-01-10 14:03:52,120 | INFO     | sufficient remaining disk space (126842044416 B)
[2026-01-10 09:04:38] 2026-01-10 14:03:52,121 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 09:04:38] 2026-01-10 14:03:52,121 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 09:04:38] 2026-01-10 14:03:52,121 | INFO     | update_server=False
[2026-01-10 09:04:38] 2026-01-10 14:03:52,121 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 09:04:38] 2026-01-10 14:03:52,121 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:04:38] 2026-01-10 14:03:52,121 | INFO     | aborting loop
[2026-01-10 09:04:38] 2026-01-10 14:03:52,632 | INFO     | all data control threads have been joined
[2026-01-10 09:04:38] 2026-01-10 14:03:52,961 | INFO     | all payload control threads have been joined
[2026-01-10 09:04:38] 2026-01-10 14:03:53,129 | INFO     | [job] retrieve thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:03:53,129 | INFO     | [job] job monitor thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:03:53,192 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 09:04:38] 2026-01-10 14:03:53,383 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:03:53,499 | INFO     | [job] validate thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:03:53,520 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:03:53,525 | INFO     | [payload] failed_post thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:03:53,640 | INFO     | all job control threads have been joined
[2026-01-10 09:04:38] 2026-01-10 14:03:53,644 | INFO     | [data] control thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:03:53,967 | INFO     | [payload] control thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:03:54,188 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:04:38] 2026-01-10 14:03:54,336 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:03:54,341 | INFO     | [data] copytool_in thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:03:54,596 | INFO     | [payload] validate_post thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:03:54,645 | INFO     | [job] control thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:03:54,817 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 09:04:38] 2026-01-10 14:03:55,194 | INFO     | [job] queue monitor thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:03:55,198 | INFO     | [data] copytool_out thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:03:58,831 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:04:02,596 | INFO     | job.realtimelogging is not enabled
[2026-01-10 09:04:38] 2026-01-10 14:04:03,604 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 09:04:38] 2026-01-10 14:04:21,165 | INFO     | PID=3204346 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 09:04:38] 2026-01-10 14:04:21,165 | INFO     | .. there are 16 such processes running
[2026-01-10 09:04:38] 2026-01-10 14:04:21,165 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 09:04:38] 2026-01-10 14:04:21,165 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 09:04:38] 2026-01-10 14:04:21,165 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 09:04:38] 2026-01-10 14:04:30,985 | INFO     | [monitor] cgroup control has ended
[2026-01-10 09:04:38] 2026-01-10 14:04:33,038 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139981477168960)>', '<ExcThread(monitor, started 139981028845312)>']
[2026-01-10 09:04:38] 2026-01-10 14:04:33,275 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 09:04:38] 2026-01-10 14:04:33,275 | INFO     | [monitor] control thread has ended
[2026-01-10 09:04:38] 2026-01-10 14:04:38,064 | INFO     | all workflow threads have been joined
[2026-01-10 09:04:38] 2026-01-10 14:04:38,064 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 09:04:38] 2026-01-10 14:04:38,064 | INFO     | traces error code: 0
[2026-01-10 09:04:38] 2026-01-10 14:04:38,065 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 09:04:38] 2026-01-10 14:04:38,190 [wrapper] ==== pilot stdout END ====
[2026-01-10 09:04:38] 2026-01-10 14:04:38,193 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 09:04:38] 2026-01-10 14:04:38,195 [wrapper] pilotpid: 3204346
[2026-01-10 09:04:38] 2026-01-10 14:04:38,197 [wrapper] Pilot exit status: 0
[2026-01-10 09:04:38] 2026-01-10 14:04:38,219 [wrapper] pandaids: 6965384100
[2026-01-10 09:04:38] 2026-01-10 14:04:38,334 [wrapper] cleanup supervisor_pilot 3416988 3204347
[2026-01-10 09:04:38] 2026-01-10 14:04:38,337 [wrapper] Test setup, not cleaning
[2026-01-10 09:04:38] 2026-01-10 14:04:38,340 [wrapper] apfmon messages muted
[2026-01-10 09:04:38] 2026-01-10 14:04:38,342 [wrapper] ==== wrapper stdout END ====
[2026-01-10 09:04:38] 2026-01-10 14:04:38,344 [wrapper] ==== wrapper stderr END ====
[2026-01-10 09:04:38]  *** Error codes and diagnostics ***
[2026-01-10 09:04:38]     "exeErrorCode": 0,
[2026-01-10 09:04:38]     "exeErrorDiag": "",
[2026-01-10 09:04:38]     "pilotErrorCode": 0,
[2026-01-10 09:04:38]     "pilotErrorDiag": "",
[2026-01-10 09:04:38]  *** Listing of results directory ***
[2026-01-10 09:04:38] total 436076
[2026-01-10 09:04:38] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:14 pilot3.tar.gz
[2026-01-10 09:04:38] -rwx------. 1 boincer umatlas     36322 Jan 10 08:14 runpilot2-wrapper.sh
[2026-01-10 09:04:38] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:15 queuedata.json
[2026-01-10 09:04:38] -rw-r--r--. 1 boincer umatlas       100 Jan 10 08:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 09:04:38] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 08:22 run_atlas
[2026-01-10 09:04:38] -rw-r--r--. 1 boincer umatlas       105 Jan 10 08:22 job.xml
[2026-01-10 09:04:38] -rw-r--r--. 2 boincer umatlas 393525946 Jan 10 08:22 EVNT.47962006._000076.pool.root.1
[2026-01-10 09:04:38] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:22 start_atlas.sh
[2026-01-10 09:04:38] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 08:22 shared
[2026-01-10 09:04:38] -rw-r--r--. 2 boincer umatlas    592616 Jan 10 08:22 input.tar.gz
[2026-01-10 09:04:38] -rw-r--r--. 1 boincer umatlas         0 Jan 10 08:22 boinc_lockfile
[2026-01-10 09:04:38] -rw-r--r--. 1 boincer umatlas      2890 Jan 10 08:22 pandaJob.out
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas        57 Jan 10 08:22 setup.sh.local
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas    989556 Jan 10 08:23 agis_schedconf.cvmfs.json
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas   1516240 Jan 10 08:23 agis_ddmendpoints.agis.ALL.json
[2026-01-10 09:04:38] drwx------. 5 boincer umatlas      4096 Jan 10 08:23 pilot3
[2026-01-10 09:04:38] -rw-r--r--. 1 boincer umatlas      6955 Jan 10 08:54 init_data.xml
[2026-01-10 09:04:38] -rw-r--r--. 1 boincer umatlas       528 Jan 10 08:55 boinc_task_state.xml
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas  45382955 Jan 10 09:03 HITS.47962010._002241.pool.root.1
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas      1032 Jan 10 09:03 memory_monitor_summary.json
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas   1483537 Jan 10 09:03 log.47962010._002241.job.log.tgz.1
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas      8535 Jan 10 09:03 heartbeat.json
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas        95 Jan 10 09:04 pilot_heartbeat.json
[2026-01-10 09:04:38] -rw-r--r--. 1 boincer umatlas        26 Jan 10 09:04 wrapper_checkpoint.txt
[2026-01-10 09:04:38] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 09:04 boinc_mmap_file
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas      4897 Jan 10 09:04 pilotlog.txt
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas    373034 Jan 10 09:04 log.47962010._002241.job.log.1
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas       353 Jan 10 09:04 output.list
[2026-01-10 09:04:38] -rw-r--r--. 1 boincer umatlas       620 Jan 10 09:04 runtime_log
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas   1873920 Jan 10 09:04 result.tar.gz
[2026-01-10 09:04:38] -rw-r--r--. 1 boincer umatlas      9344 Jan 10 09:04 runtime_log.err
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas       652 Jan 10 09:04 qahKDmSyny8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1pmKDmySpW2m.diag
[2026-01-10 09:04:38] -rw-r--r--. 1 boincer umatlas     22491 Jan 10 09:04 stderr.txt
[2026-01-10 09:04:38] HITS file was successfully produced:
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas 45382955 Jan 10 09:03 shared/HITS.pool.root.1
[2026-01-10 09:04:38]  *** Contents of shared directory: ***
[2026-01-10 09:04:38] total 431056
[2026-01-10 09:04:38] -rw-r--r--. 2 boincer umatlas 393525946 Jan 10 08:22 ATLAS.root_0
[2026-01-10 09:04:38] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:22 start_atlas.sh
[2026-01-10 09:04:38] -rw-r--r--. 2 boincer umatlas    592616 Jan 10 08:22 input.tar.gz
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas  45382955 Jan 10 09:03 HITS.pool.root.1
[2026-01-10 09:04:38] -rw-------. 1 boincer umatlas   1873920 Jan 10 09:04 result.tar.gz
09:04:40 (3198525): run_atlas exited; CPU time 11368.966410
09:04:40 (3198525): called boinc_finish(0)

</stderr_txt>
]]>

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