Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:39:02 (4069385): wrapper (7.7.26015): starting
08:39:02 (4069385): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 08:39:03] Arguments: --nthreads 8
[2026-01-10 08:39:03] Threads: 8
[2026-01-10 08:39:03] Checking for CVMFS
[2026-01-10 08:39:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 08:39:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 08:39:03] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 08:39:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 08:39:03] 2.13.3.0 12497 94785 226016 154981 1 209 32756861 32935937 19551 16776704 0 494210318 99.477 683871853 37871 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 08:39:03] CVMFS is ok
[2026-01-10 08:39:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 08:39:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 08:39:03] Further information can be found at the LHC@home message board.
[2026-01-10 08:39:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 08:39:03] Checking for apptainer binary...
[2026-01-10 08:39:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 08:39:03] Running /usr/bin/apptainer --version
[2026-01-10 08:39:03] apptainer version 1.4.5-2.el9
[2026-01-10 08:39:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 08:39:04] c7-7-35.aglt2.org
[2026-01-10 08:39:04] apptainer works
[2026-01-10 08:39:04] Set ATHENA_PROC_NUMBER=8
[2026-01-10 08:39:04] Set ATHENA_CORE_NUMBER=8
[2026-01-10 08:39:04] Starting ATLAS job with PandaID=6965384436
[2026-01-10 08:39:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 10:06:58]  *** The last 200 lines of the pilot log: ***
[2026-01-10 10:06:58] 2026-01-10 15:05:54,186 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:06:58] 2026-01-10 15:05:55,721 | INFO     | time since job start (5188s) is within the limit (349056.0s)
[2026-01-10 10:06:58] 2026-01-10 15:05:56,695 | INFO     | monitor loop #328: job 0:6965384436 is in state 'finished'
[2026-01-10 10:06:58] 2026-01-10 15:05:56,695 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:06:58] 2026-01-10 15:05:57,736 | INFO     | time since job start (5190s) is within the limit (349056.0s)
[2026-01-10 10:06:58] 2026-01-10 15:05:59,226 | INFO     | monitor loop #329: job 0:6965384436 is in state 'finished'
[2026-01-10 10:06:58] 2026-01-10 15:05:59,226 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:06:58] 2026-01-10 15:05:59,743 | INFO     | time since job start (5192s) is within the limit (349056.0s)
[2026-01-10 10:06:58] 2026-01-10 15:06:01,730 | INFO     | monitor loop #330: job 0:6965384436 is in state 'finished'
[2026-01-10 10:06:58] 2026-01-10 15:06:01,731 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:06:58] 2026-01-10 15:06:01,750 | INFO     | time since job start (5194s) is within the limit (349056.0s)
[2026-01-10 10:06:58] 2026-01-10 15:06:04,014 | INFO     | PID=4073703 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 10:06:58] 2026-01-10 15:06:04,014 | INFO     | .. there are 19 such processes running
[2026-01-10 10:06:58] 2026-01-10 15:06:04,242 | INFO     | monitor loop #331: job 0:6965384436 is in state 'finished'
[2026-01-10 10:06:58] 2026-01-10 15:06:04,243 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:06:58] 2026-01-10 15:06:05,016 | INFO     | time since job start (5198s) is within the limit (349056.0s)
[2026-01-10 10:06:58] 2026-01-10 15:06:06,752 | INFO     | monitor loop #332: job 0:6965384436 is in state 'finished'
[2026-01-10 10:06:58] 2026-01-10 15:06:06,763 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:06:58] 2026-01-10 15:06:07,024 | INFO     | time since job start (5200s) is within the limit (349056.0s)
[2026-01-10 10:06:58] 2026-01-10 15:06:09,031 | INFO     | time since job start (5202s) is within the limit (349056.0s)
[2026-01-10 10:06:58] 2026-01-10 15:06:09,271 | INFO     | monitor loop #333: job 0:6965384436 is in state 'finished'
[2026-01-10 10:06:58] 2026-01-10 15:06:09,271 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:06:58] 2026-01-10 15:06:11,055 | INFO     | time since job start (5204s) is within the limit (349056.0s)
[2026-01-10 10:06:58] 2026-01-10 15:06:11,793 | INFO     | monitor loop #334: job 0:6965384436 is in state 'finished'
[2026-01-10 10:06:58] 2026-01-10 15:06:11,793 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:06:58] 2026-01-10 15:06:13,087 | INFO     | time since job start (5206s) is within the limit (349056.0s)
[2026-01-10 10:06:58] 2026-01-10 15:06:14,298 | INFO     | monitor loop #335: job 0:6965384436 is in state 'finished'
[2026-01-10 10:06:58] 2026-01-10 15:06:14,342 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:06:58] 2026-01-10 15:06:15,094 | INFO     | time since job start (5208s) is within the limit (349056.0s)
[2026-01-10 10:06:58] 2026-01-10 15:06:16,847 | INFO     | monitor loop #336: job 0:6965384436 is in state 'finished'
[2026-01-10 10:06:58] 2026-01-10 15:06:16,847 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:06:58] 2026-01-10 15:06:17,101 | INFO     | time since job start (5210s) is within the limit (349056.0s)
[2026-01-10 10:06:58] 2026-01-10 15:06:19,108 | INFO     | time since job start (5212s) is within the limit (349056.0s)
[2026-01-10 10:06:58] 2026-01-10 15:06:19,368 | INFO     | monitor loop #337: job 0:6965384436 is in state 'finished'
[2026-01-10 10:06:58] 2026-01-10 15:06:19,369 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:06:58] 2026-01-10 15:06:21,115 | INFO     | time since job start (5214s) is within the limit (349056.0s)
[2026-01-10 10:06:58] 2026-01-10 15:06:21,891 | INFO     | monitor loop #338: job 0:6965384436 is in state 'finished'
[2026-01-10 10:06:58] 2026-01-10 15:06:21,891 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:06:58] 2026-01-10 15:06:22,497 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 10:06:58] 2026-01-10 15:06:22,507 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3163.157541666666
[2026-01-10 10:06:58] 2026-01-10 15:06:22,561 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6965384436/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 10:06:58] 2026-01-10 15:06:22,561 | INFO     | extracted standard info from prmon json
[2026-01-10 10:06:58] 2026-01-10 15:06:22,561 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 10:06:58] 2026-01-10 15:06:22,562 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 10:06:58] 2026-01-10 15:06:22,563 | INFO     | fitting pss+swap vs Time
[2026-01-10 10:06:58] 2026-01-10 15:06:22,563 | INFO     | sum of square deviations: 147052810.6794869
[2026-01-10 10:06:58] 2026-01-10 15:06:22,564 | INFO     | sum of deviations: -48634633170.92307
[2026-01-10 10:06:58] 2026-01-10 15:06:22,564 | INFO     | mean x: 1768055064.0641026
[2026-01-10 10:06:58] 2026-01-10 15:06:22,564 | INFO     | mean y: 2213629.3846153845
[2026-01-10 10:06:58] 2026-01-10 15:06:22,564 | INFO     | intersect: 584749346781.2266
[2026-01-10 10:06:58] 2026-01-10 15:06:22,564 | INFO     | chi2: 11.372045341175983
[2026-01-10 10:06:58] 2026-01-10 15:06:22,564 | INFO     | current memory leak: -330.73 B/s (using 78 data points, chi2=11.37)
[2026-01-10 10:06:58] 2026-01-10 15:06:22,564 | INFO     | could have reported an average CPU frequency of 3157 MHz (6 samples)
[2026-01-10 10:06:58] 2026-01-10 15:06:22,565 | INFO     | ..............................
[2026-01-10 10:06:58] 2026-01-10 15:06:22,565 | INFO     | . Timing measurements:
[2026-01-10 10:06:58] 2026-01-10 15:06:22,565 | INFO     | . get job = 0 s
[2026-01-10 10:06:58] 2026-01-10 15:06:22,565 | INFO     | . initial setup = 3 s
[2026-01-10 10:06:58] 2026-01-10 15:06:22,565 | INFO     | . payload setup = 16 s
[2026-01-10 10:06:58] 2026-01-10 15:06:22,565 | INFO     | . stage-in = 0 s
[2026-01-10 10:06:58] 2026-01-10 15:06:22,565 | INFO     | . payload execution = 5131 s
[2026-01-10 10:06:58] 2026-01-10 15:06:22,565 | INFO     | . stage-out = 3 s
[2026-01-10 10:06:58] 2026-01-10 15:06:22,565 | INFO     | . log creation = 1 s
[2026-01-10 10:06:58] 2026-01-10 15:06:22,565 | INFO     | ..............................
[2026-01-10 10:06:58] 2026-01-10 15:06:22,898 | INFO     | 
[2026-01-10 10:06:58] 2026-01-10 15:06:22,899 | INFO     | job summary report
[2026-01-10 10:06:58] 2026-01-10 15:06:22,899 | INFO     | --------------------------------------------------
[2026-01-10 10:06:58] 2026-01-10 15:06:22,899 | INFO     | PanDA job id: 6965384436
[2026-01-10 10:06:58] 2026-01-10 15:06:22,899 | INFO     | task id: 47962010
[2026-01-10 10:06:58] 2026-01-10 15:06:22,899 | INFO     | errors: (none)
[2026-01-10 10:06:58] 2026-01-10 15:06:22,899 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 10:06:58] 2026-01-10 15:06:22,899 | INFO     | pilot state: finished 
[2026-01-10 10:06:58] 2026-01-10 15:06:22,899 | INFO     | transexitcode: 0
[2026-01-10 10:06:58] 2026-01-10 15:06:22,899 | INFO     | exeerrorcode: 0
[2026-01-10 10:06:58] 2026-01-10 15:06:22,899 | INFO     | exeerrordiag: 
[2026-01-10 10:06:58] 2026-01-10 15:06:22,899 | INFO     | exitcode: 0
[2026-01-10 10:06:58] 2026-01-10 15:06:22,899 | INFO     | exitmsg: OK
[2026-01-10 10:06:58] 2026-01-10 15:06:22,899 | INFO     | cpuconsumptiontime: 12798 s
[2026-01-10 10:06:58] 2026-01-10 15:06:22,899 | INFO     | nevents: 50
[2026-01-10 10:06:58] 2026-01-10 15:06:22,899 | INFO     | neventsw: 0
[2026-01-10 10:06:58] 2026-01-10 15:06:22,899 | INFO     | pid: 4087287
[2026-01-10 10:06:58] 2026-01-10 15:06:22,900 | INFO     | pgrp: 4087287
[2026-01-10 10:06:58] 2026-01-10 15:06:22,900 | INFO     | corecount: 8
[2026-01-10 10:06:58] 2026-01-10 15:06:22,900 | INFO     | event service: False
[2026-01-10 10:06:58] 2026-01-10 15:06:22,900 | INFO     | sizes: {0: 2284344, 1: 2284599, 2: 2284627, 10: 2284889, 12: 2284917, 5152: 2312125, 5156: 2321175, 5196: 2321365}
[2026-01-10 10:06:58] 2026-01-10 15:06:22,900 | INFO     | --------------------------------------------------
[2026-01-10 10:06:58] 2026-01-10 15:06:22,900 | INFO     | 
[2026-01-10 10:06:58] 2026-01-10 15:06:22,900 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-10 10:06:58] 2026-01-10 15:06:23,108 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 10:06:58] 2026-01-10 15:06:23,108 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 10:06:58] 2026-01-10 15:06:23,108 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 10:06:58] 2026-01-10 15:06:23,109 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 10:06:58] 2026-01-10 15:06:23,109 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 10:06:58] 2026-01-10 15:06:23,109 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 10:06:58] 2026-01-10 15:06:23,109 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 10:06:58] 2026-01-10 15:06:23,109 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 10:06:58] 2026-01-10 15:06:23,109 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 10:06:58] 2026-01-10 15:06:23,109 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 10:06:58] 2026-01-10 15:06:23,109 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 10:06:58] 2026-01-10 15:06:23,109 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 10:06:58] 2026-01-10 15:06:23,109 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 10:06:58] 2026-01-10 15:06:23,109 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 10:06:58] 2026-01-10 15:06:23,109 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 10:06:58] 2026-01-10 15:06:23,109 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 10:06:58] 2026-01-10 15:06:23,110 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 10:06:58] 2026-01-10 15:06:23,110 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 10:06:58] 2026-01-10 15:06:23,110 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 10:06:58] 2026-01-10 15:06:23,110 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 10:06:58] 2026-01-10 15:06:23,110 | INFO     | job 6965384436 has completed (purged errors)
[2026-01-10 10:06:58] 2026-01-10 15:06:23,110 | INFO     | overall cleanup function is called
[2026-01-10 10:06:58] 2026-01-10 15:06:24,147 | INFO     | --- collectZombieJob: --- 10, [4087287]
[2026-01-10 10:06:58] 2026-01-10 15:06:24,147 | INFO     | zombie collector waiting for pid 4087287
[2026-01-10 10:06:58] 2026-01-10 15:06:24,147 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 10:06:58] 2026-01-10 15:06:24,147 | INFO     | collected zombie processes
[2026-01-10 10:06:58] 2026-01-10 15:06:24,147 | INFO     | will attempt to kill all subprocesses of pid=4087287
[2026-01-10 10:06:58] 2026-01-10 15:06:25,642 | INFO     | process IDs to be killed: [4087287] (in reverse order)
[2026-01-10 10:06:58] 2026-01-10 15:06:26,148 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 10:06:58] 2026-01-10 15:06:26,148 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 10:06:58] 2026-01-10 15:06:26,183 | INFO     | did not find any defunct processes belonging to 4087287
[2026-01-10 10:06:58] 2026-01-10 15:06:26,242 | INFO     | did not find any defunct processes belonging to 4087287
[2026-01-10 10:06:58] 2026-01-10 15:06:26,242 | INFO     | ready for new job
[2026-01-10 10:06:58] 2026-01-10 15:06:26,242 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 10:06:58] 2026-01-10 15:06:26,244 | INFO     | ***************************************
[2026-01-10 10:06:58] 2026-01-10 15:06:26,244 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 10:06:58] 2026-01-10 15:06:26,244 | INFO     | ***************************************
[2026-01-10 10:06:58] 2026-01-10 15:06:26,244 | INFO     | 
[2026-01-10 10:06:58] 2026-01-10 15:06:26,264 | INFO     | architecture information:
[2026-01-10 10:06:58] 2026-01-10 15:06:26,268 | INFO     | executing command: cat /etc/os-release
[2026-01-10 10:06:58] 2026-01-10 15:06:26,355 | INFO     | cat /etc/os-release:
[2026-01-10 10:06:58] NAME="CentOS Linux"
[2026-01-10 10:06:58] VERSION="7 (Core)"
[2026-01-10 10:06:58] ID="centos"
[2026-01-10 10:06:58] ID_LIKE="rhel fedora"
[2026-01-10 10:06:58] VERSION_ID="7"
[2026-01-10 10:06:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 10:06:58] ANSI_COLOR="0;31"
[2026-01-10 10:06:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 10:06:58] HOME_URL="https://www.centos.org/"
[2026-01-10 10:06:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 10:06:58] 
[2026-01-10 10:06:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 10:06:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 10:06:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 10:06:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 10:06:58] 
[2026-01-10 10:06:58] 2026-01-10 15:06:26,355 | INFO     | ***************************************
[2026-01-10 10:06:58] 2026-01-10 15:06:26,859 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-10 10:06:58] 2026-01-10 15:06:26,893 | INFO     | sufficient remaining disk space (74714185728 B)
[2026-01-10 10:06:58] 2026-01-10 15:06:26,893 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 10:06:58] 2026-01-10 15:06:26,893 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 10:06:58] 2026-01-10 15:06:26,894 | INFO     | update_server=False
[2026-01-10 10:06:58] 2026-01-10 15:06:26,894 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 10:06:58] 2026-01-10 15:06:26,908 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 10:06:58] 2026-01-10 15:06:26,912 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 10:06:58] 2026-01-10 15:06:26,912 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 10:06:58] 2026-01-10 15:06:26,912 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 10:06:58] 2026-01-10 15:06:26,912 | INFO     | will abort loop
[2026-01-10 10:06:58] 2026-01-10 15:06:27,284 | INFO     | all job control threads have been joined
[2026-01-10 10:06:58] 2026-01-10 15:06:27,295 | INFO     | all payload control threads have been joined
[2026-01-10 10:06:58] 2026-01-10 15:06:27,774 | INFO     | all data control threads have been joined
[2026-01-10 10:06:58] 2026-01-10 15:06:27,899 | INFO     | [job] retrieve thread has finished
[2026-01-10 10:06:58] 2026-01-10 15:06:27,913 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 10:06:58] 2026-01-10 15:06:27,939 | INFO     | [job] job monitor thread has finished
[2026-01-10 10:06:58] 2026-01-10 15:06:28,095 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 10:06:58] 2026-01-10 15:06:28,289 | INFO     | [job] control thread has finished
[2026-01-10 10:06:58] 2026-01-10 15:06:28,301 | INFO     | [payload] control thread has finished
[2026-01-10 10:06:58] 2026-01-10 15:06:28,416 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 10:06:58] 2026-01-10 15:06:28,442 | INFO     | [data] copytool_in thread has finished
[2026-01-10 10:06:58] 2026-01-10 15:06:28,469 | INFO     | [job] validate thread has finished
[2026-01-10 10:06:58] 2026-01-10 15:06:28,469 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 10:06:58] 2026-01-10 15:06:28,704 | INFO     | [payload] validate_post thread has finished
[2026-01-10 10:06:58] 2026-01-10 15:06:28,780 | INFO     | [data] control thread has finished
[2026-01-10 10:06:58] 2026-01-10 15:06:28,915 | INFO     | [data] copytool_out thread has finished
[2026-01-10 10:06:58] 2026-01-10 15:06:28,919 | INFO     | [job] queue monitor thread has finished
[2026-01-10 10:06:58] 2026-01-10 15:06:29,309 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 10:06:58] 2026-01-10 15:06:29,349 | INFO     | [payload] failed_post thread has finished
[2026-01-10 10:06:58] 2026-01-10 15:06:29,902 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 10:06:58] 2026-01-10 15:06:33,928 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 10:06:58] 2026-01-10 15:06:35,745 | INFO     | [monitor] cgroup control has ended
[2026-01-10 10:06:58] 2026-01-10 15:06:36,342 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139773621413696)>', '<ExcThread(monitor, started 139772982974208)>']
[2026-01-10 10:06:58] 2026-01-10 15:06:41,368 | INFO     | all workflow threads have been joined
[2026-01-10 10:06:58] 2026-01-10 15:06:41,368 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 10:06:58] 2026-01-10 15:06:41,368 | INFO     | traces error code: 0
[2026-01-10 10:06:58] 2026-01-10 15:06:41,368 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 10:06:58] 2026-01-10 15:06:55,740 | INFO     | PID=4073703 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 10:06:58] 2026-01-10 15:06:55,748 | INFO     | .. there are 19 such processes running
[2026-01-10 10:06:58] 2026-01-10 15:06:55,748 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 10:06:58] 2026-01-10 15:06:55,748 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 10:06:58] 2026-01-10 15:06:55,748 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 10:06:58] 2026-01-10 15:06:55,748 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 10:06:58] 2026-01-10 15:06:55,748 | INFO     | [monitor] control thread has ended
[2026-01-10 10:06:58] 2026-01-10 15:06:57,334 [wrapper] ==== pilot stdout END ====
[2026-01-10 10:06:58] 2026-01-10 15:06:57,350 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 10:06:58] 2026-01-10 15:06:57,372 [wrapper] pilotpid: 4073703
[2026-01-10 10:06:58] 2026-01-10 15:06:57,387 [wrapper] Pilot exit status: 0
[2026-01-10 10:06:58] 2026-01-10 15:06:57,454 [wrapper] pandaids: 6965384436
[2026-01-10 10:06:58] 2026-01-10 15:06:57,717 [wrapper] cleanup supervisor_pilot  202222 4073704
[2026-01-10 10:06:58] 2026-01-10 15:06:57,799 [wrapper] Test setup, not cleaning
[2026-01-10 10:06:58] 2026-01-10 15:06:57,820 [wrapper] apfmon messages muted
[2026-01-10 10:06:58] 2026-01-10 15:06:57,835 [wrapper] ==== wrapper stdout END ====
[2026-01-10 10:06:58] 2026-01-10 15:06:57,846 [wrapper] ==== wrapper stderr END ====
[2026-01-10 10:06:58]  *** Error codes and diagnostics ***
[2026-01-10 10:06:58]     "exeErrorCode": 0,
[2026-01-10 10:06:58]     "exeErrorDiag": "",
[2026-01-10 10:06:58]     "pilotErrorCode": 0,
[2026-01-10 10:06:58]     "pilotErrorDiag": "",
[2026-01-10 10:06:58]  *** Listing of results directory ***
[2026-01-10 10:06:58] total 432660
[2026-01-10 10:06:58] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:14 pilot3.tar.gz
[2026-01-10 10:06:58] -rwx------. 1 boincer umatlas     36322 Jan 10 08:14 runpilot2-wrapper.sh
[2026-01-10 10:06:58] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:15 queuedata.json
[2026-01-10 10:06:58] -rw-r--r--. 1 boincer umatlas       100 Jan 10 08:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 10:06:58] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 08:39 run_atlas
[2026-01-10 10:06:58] -rw-r--r--. 1 boincer umatlas       105 Jan 10 08:39 job.xml
[2026-01-10 10:06:58] -rw-r--r--. 2 boincer umatlas 392231449 Jan 10 08:39 EVNT.47962006._000115.pool.root.1
[2026-01-10 10:06:58] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:39 start_atlas.sh
[2026-01-10 10:06:58] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 08:39 shared
[2026-01-10 10:06:58] -rw-r--r--. 2 boincer umatlas    592614 Jan 10 08:39 input.tar.gz
[2026-01-10 10:06:58] -rw-r--r--. 1 boincer umatlas         0 Jan 10 08:39 boinc_lockfile
[2026-01-10 10:06:58] -rw-r--r--. 1 boincer umatlas      2891 Jan 10 08:39 pandaJob.out
[2026-01-10 10:06:58] -rw-------. 1 boincer umatlas        57 Jan 10 08:39 setup.sh.local
[2026-01-10 10:06:58] -rw-------. 1 boincer umatlas    989556 Jan 10 08:39 agis_schedconf.cvmfs.json
[2026-01-10 10:06:58] -rw-------. 1 boincer umatlas   1516240 Jan 10 08:39 agis_ddmendpoints.agis.ALL.json
[2026-01-10 10:06:58] drwx------. 5 boincer umatlas      4096 Jan 10 08:39 pilot3
[2026-01-10 10:06:58] -rw-r--r--. 1 boincer umatlas       530 Jan 10 09:45 boinc_task_state.xml
[2026-01-10 10:06:58] -rw-r--r--. 1 boincer umatlas      6944 Jan 10 10:00 init_data.xml
[2026-01-10 10:06:58] -rw-------. 1 boincer umatlas  43092749 Jan 10 10:05 HITS.47962010._002572.pool.root.1
[2026-01-10 10:06:58] -rw-------. 1 boincer umatlas      1032 Jan 10 10:05 memory_monitor_summary.json
[2026-01-10 10:06:58] -rw-------. 1 boincer umatlas   1191143 Jan 10 10:05 log.47962010._002572.job.log.tgz.1
[2026-01-10 10:06:58] -rw-------. 1 boincer umatlas        95 Jan 10 10:06 pilot_heartbeat.json
[2026-01-10 10:06:58] -rw-------. 1 boincer umatlas      8550 Jan 10 10:06 heartbeat.json
[2026-01-10 10:06:58] -rw-------. 1 boincer umatlas       823 Jan 10 10:06 pilotlog.txt
[2026-01-10 10:06:58] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 10:06 boinc_mmap_file
[2026-01-10 10:06:58] -rw-r--r--. 1 boincer umatlas        27 Jan 10 10:06 wrapper_checkpoint.txt
[2026-01-10 10:06:58] -rw-------. 1 boincer umatlas    713951 Jan 10 10:06 log.47962010._002572.job.log.1
[2026-01-10 10:06:58] -rw-------. 1 boincer umatlas       353 Jan 10 10:06 output.list
[2026-01-10 10:06:58] -rw-r--r--. 1 boincer umatlas       620 Jan 10 10:06 runtime_log
[2026-01-10 10:06:58] -rw-------. 1 boincer umatlas   1925120 Jan 10 10:06 result.tar.gz
[2026-01-10 10:06:58] -rw-r--r--. 1 boincer umatlas      9337 Jan 10 10:06 runtime_log.err
[2026-01-10 10:06:58] -rw-------. 1 boincer umatlas       653 Jan 10 10:06 3B1LDmSyny8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmvZhKDmowscSn.diag
[2026-01-10 10:06:58] -rw-r--r--. 1 boincer umatlas     22437 Jan 10 10:06 stderr.txt
[2026-01-10 10:06:58] HITS file was successfully produced:
[2026-01-10 10:06:58] -rw-------. 1 boincer umatlas 43092749 Jan 10 10:05 shared/HITS.pool.root.1
[2026-01-10 10:06:58]  *** Contents of shared directory: ***
[2026-01-10 10:06:58] total 427600
[2026-01-10 10:06:58] -rw-r--r--. 2 boincer umatlas 392231449 Jan 10 08:39 ATLAS.root_0
[2026-01-10 10:06:58] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:39 start_atlas.sh
[2026-01-10 10:06:58] -rw-r--r--. 2 boincer umatlas    592614 Jan 10 08:39 input.tar.gz
[2026-01-10 10:06:58] -rw-------. 1 boincer umatlas  43092749 Jan 10 10:05 HITS.pool.root.1
[2026-01-10 10:06:58] -rw-------. 1 boincer umatlas   1925120 Jan 10 10:06 result.tar.gz
10:07:20 (4069385): run_atlas exited; CPU time 12906.611453
10:07:20 (4069385): called boinc_finish(0)

</stderr_txt>
]]>

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