Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:26:15 (879288): wrapper (7.7.26015): starting
09:26:15 (879288): wrapper: running run_atlas (--nthreads 11)
[2026-01-10 09:26:15] Arguments: --nthreads 11
[2026-01-10 09:26:15] Threads: 11
[2026-01-10 09:26:15] Checking for CVMFS
[2026-01-10 09:26:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 09:26:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 09:26:15] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 09:26:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 09:26:16] 2.13.3.0 9428 93272 318640 154982 1 91 16085607 18491393 13662 16776704 0 423719920 99.363 670028760 33249 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 09:26:16] CVMFS is ok
[2026-01-10 09:26:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 09:26:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 09:26:16] Further information can be found at the LHC@home message board.
[2026-01-10 09:26:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 09:26:16] Checking for apptainer binary...
[2026-01-10 09:26:16] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 09:26:16] Running /usr/bin/apptainer --version
[2026-01-10 09:26:16] apptainer version 1.4.5-2.el9
[2026-01-10 09:26:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 09:26:16] c-8-38.aglt2.org
[2026-01-10 09:26:16] apptainer works
[2026-01-10 09:26:16] Set ATHENA_PROC_NUMBER=11
[2026-01-10 09:26:16] Set ATHENA_CORE_NUMBER=11
[2026-01-10 09:26:16] Starting ATLAS job with PandaID=6965384447
[2026-01-10 09:26:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 10:17:47]  *** The last 200 lines of the pilot log: ***
[2026-01-10 10:17:47]  mtime=0
[2026-01-10 10:17:47]  protocol_id=None
[2026-01-10 10:17:47]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-10 10:17:47]  replicas=None
[2026-01-10 10:17:47]  scope=mc16_13TeV
[2026-01-10 10:17:47]  status=None
[2026-01-10 10:17:47]  status_code=0
[2026-01-10 10:17:47]  storage_token=
[2026-01-10 10:17:47]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6965384447/log.47962010._002583.job.log.tgz.1
[2026-01-10 10:17:47]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/3c/4c/log.47962010._002583.job.log.tgz.1
[2026-01-10 10:17:47]  workdir=None
[2026-01-10 10:17:47] ]
[2026-01-10 10:17:47] 2026-01-10 15:17:09,253 | INFO     | transferring file log.47962010._002583.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6965384447/log.47962010._002583.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-10 10:17:47] 2026-01-10 15:17:09,253 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6965384447/log.47962010._002583.job.log.tgz.1 /tmp/boinchome/slots/0/log.47962010._002583.job
[2026-01-10 10:17:47] 2026-01-10 15:17:09,273 | INFO     | adding to output.list: log.47962010._002583.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/3c/4c/log.47962010._002583.job.log.tgz.
[2026-01-10 10:17:47] 2026-01-10 15:17:09,275 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 10:17:47] 2026-01-10 15:17:09,275 | INFO     | summary of transferred files:
[2026-01-10 10:17:47] 2026-01-10 15:17:09,275 | INFO     |  -- lfn=log.47962010._002583.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 10:17:47] 2026-01-10 15:17:09,275 | INFO     | stage-out finished correctly
[2026-01-10 10:17:47] 2026-01-10 15:17:09,366 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 10:17:47] 2026-01-10 15:17:09,534 | INFO     | time since job start (3042s) is within the limit (349056.0s)
[2026-01-10 10:17:47] 2026-01-10 15:17:09,576 | INFO     | number of running child processes to parent process 889444: 1
[2026-01-10 10:17:47] 2026-01-10 15:17:09,576 | INFO     | maximum number of monitored processes: 19
[2026-01-10 10:17:47] 2026-01-10 15:17:11,104 | INFO     | job 6965384447 has state=finished
[2026-01-10 10:17:47] 2026-01-10 15:17:11,104 | INFO     | preparing for final server update for job 6965384447 in state='finished'
[2026-01-10 10:17:47] 2026-01-10 15:17:11,104 | INFO     | this job has now completed (state=finished)
[2026-01-10 10:17:47] 2026-01-10 15:17:11,105 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 10:17:47] 2026-01-10 15:17:11,105 | INFO     | log transfer has been attempted: DONE
[2026-01-10 10:17:47] 2026-01-10 15:17:11,105 | INFO     | job 6965384447 has finished - writing final server update
[2026-01-10 10:17:47] 2026-01-10 15:17:11,105 | INFO     | total number of processed events: 50 (read)
[2026-01-10 10:17:47] 2026-01-10 15:17:11,106 | INFO     | executing command: lscpu
[2026-01-10 10:17:47] 2026-01-10 15:17:11,150 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 10:17:47] 2026-01-10 15:17:11,539 | INFO     | time since job start (3044s) is within the limit (349056.0s)
[2026-01-10 10:17:47] 2026-01-10 15:17:12,079 | INFO     | monitor loop #214: job 0:6965384447 is in state 'finished'
[2026-01-10 10:17:47] 2026-01-10 15:17:12,079 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:17:47] 2026-01-10 15:17:13,545 | INFO     | time since job start (3046s) is within the limit (349056.0s)
[2026-01-10 10:17:47] 2026-01-10 15:17:14,582 | INFO     | monitor loop #215: job 0:6965384447 is in state 'finished'
[2026-01-10 10:17:47] 2026-01-10 15:17:14,582 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:17:47] 2026-01-10 15:17:15,069 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 10:17:47] 2026-01-10 15:17:15,075 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.2596999999996
[2026-01-10 10:17:47] 2026-01-10 15:17:15,082 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6965384447/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 10:17:47] 2026-01-10 15:17:15,083 | INFO     | extracted standard info from prmon json
[2026-01-10 10:17:47] 2026-01-10 15:17:15,083 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 10:17:47] 2026-01-10 15:17:15,083 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 10:17:47] 2026-01-10 15:17:15,085 | INFO     | fitting pss+swap vs Time
[2026-01-10 10:17:47] 2026-01-10 15:17:15,086 | INFO     | sum of square deviations: 24634372.279069778
[2026-01-10 10:17:47] 2026-01-10 15:17:15,086 | INFO     | sum of deviations: -7129223353.44186
[2026-01-10 10:17:47] 2026-01-10 15:17:15,086 | INFO     | mean x: 1768056800.3953488
[2026-01-10 10:17:47] 2026-01-10 15:17:15,086 | INFO     | mean y: 2986407.7906976743
[2026-01-10 10:17:47] 2026-01-10 15:17:15,086 | INFO     | intersect: 511681209371.8787
[2026-01-10 10:17:47] 2026-01-10 15:17:15,087 | INFO     | chi2: 0.757243772697303
[2026-01-10 10:17:47] 2026-01-10 15:17:15,087 | INFO     | current memory leak: -289.40 B/s (using 43 data points, chi2=0.76)
[2026-01-10 10:17:47] 2026-01-10 15:17:15,087 | INFO     | could have reported an average CPU frequency of 2604 MHz (5 samples)
[2026-01-10 10:17:47] 2026-01-10 15:17:15,087 | INFO     | ..............................
[2026-01-10 10:17:47] 2026-01-10 15:17:15,087 | INFO     | . Timing measurements:
[2026-01-10 10:17:47] 2026-01-10 15:17:15,088 | INFO     | . get job = 0 s
[2026-01-10 10:17:47] 2026-01-10 15:17:15,088 | INFO     | . initial setup = 2 s
[2026-01-10 10:17:47] 2026-01-10 15:17:15,088 | INFO     | . payload setup = 6 s
[2026-01-10 10:17:47] 2026-01-10 15:17:15,088 | INFO     | . stage-in = 0 s
[2026-01-10 10:17:47] 2026-01-10 15:17:15,088 | INFO     | . payload execution = 3016 s
[2026-01-10 10:17:47] 2026-01-10 15:17:15,088 | INFO     | . stage-out = 1 s
[2026-01-10 10:17:47] 2026-01-10 15:17:15,088 | INFO     | . log creation = 0 s
[2026-01-10 10:17:47] 2026-01-10 15:17:15,088 | INFO     | ..............................
[2026-01-10 10:17:47] 2026-01-10 15:17:15,194 | INFO     | 
[2026-01-10 10:17:47] 2026-01-10 15:17:15,195 | INFO     | job summary report
[2026-01-10 10:17:47] 2026-01-10 15:17:15,195 | INFO     | --------------------------------------------------
[2026-01-10 10:17:47] 2026-01-10 15:17:15,195 | INFO     | PanDA job id: 6965384447
[2026-01-10 10:17:47] 2026-01-10 15:17:15,195 | INFO     | task id: 47962010
[2026-01-10 10:17:47] 2026-01-10 15:17:15,195 | INFO     | errors: (none)
[2026-01-10 10:17:47] 2026-01-10 15:17:15,195 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 10:17:47] 2026-01-10 15:17:15,195 | INFO     | pilot state: finished 
[2026-01-10 10:17:47] 2026-01-10 15:17:15,196 | INFO     | transexitcode: 0
[2026-01-10 10:17:47] 2026-01-10 15:17:15,196 | INFO     | exeerrorcode: 0
[2026-01-10 10:17:47] 2026-01-10 15:17:15,196 | INFO     | exeerrordiag: 
[2026-01-10 10:17:47] 2026-01-10 15:17:15,196 | INFO     | exitcode: 0
[2026-01-10 10:17:47] 2026-01-10 15:17:15,196 | INFO     | exitmsg: OK
[2026-01-10 10:17:47] 2026-01-10 15:17:15,196 | INFO     | cpuconsumptiontime: 17756 s
[2026-01-10 10:17:47] 2026-01-10 15:17:15,196 | INFO     | nevents: 50
[2026-01-10 10:17:47] 2026-01-10 15:17:15,196 | INFO     | neventsw: 0
[2026-01-10 10:17:47] 2026-01-10 15:17:15,196 | INFO     | pid: 889444
[2026-01-10 10:17:47] 2026-01-10 15:17:15,196 | INFO     | pgrp: 889444
[2026-01-10 10:17:47] 2026-01-10 15:17:15,197 | INFO     | corecount: 11
[2026-01-10 10:17:47] 2026-01-10 15:17:15,197 | INFO     | event service: False
[2026-01-10 10:17:47] 2026-01-10 15:17:15,197 | INFO     | sizes: {0: 2284457, 1: 2284599, 5: 2284861, 11: 2284917, 3026: 2311037, 3027: 2320215, 3033: 2320437}
[2026-01-10 10:17:47] 2026-01-10 15:17:15,197 | INFO     | --------------------------------------------------
[2026-01-10 10:17:47] 2026-01-10 15:17:15,197 | INFO     | 
[2026-01-10 10:17:47] 2026-01-10 15:17:15,197 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-10 10:17:47] 2026-01-10 15:17:15,215 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 10:17:47] 2026-01-10 15:17:15,216 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 10:17:47] 2026-01-10 15:17:15,216 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 10:17:47] 2026-01-10 15:17:15,216 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 10:17:47] 2026-01-10 15:17:15,216 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 10:17:47] 2026-01-10 15:17:15,216 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 10:17:47] 2026-01-10 15:17:15,216 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 10:17:47] 2026-01-10 15:17:15,217 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 10:17:47] 2026-01-10 15:17:15,217 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 10:17:47] 2026-01-10 15:17:15,217 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 10:17:47] 2026-01-10 15:17:15,217 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 10:17:47] 2026-01-10 15:17:15,217 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 10:17:47] 2026-01-10 15:17:15,217 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 10:17:47] 2026-01-10 15:17:15,217 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 10:17:47] 2026-01-10 15:17:15,217 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 10:17:47] 2026-01-10 15:17:15,217 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 10:17:47] 2026-01-10 15:17:15,218 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 10:17:47] 2026-01-10 15:17:15,218 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 10:17:47] 2026-01-10 15:17:15,218 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 10:17:47] 2026-01-10 15:17:15,218 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 10:17:47] 2026-01-10 15:17:15,218 | INFO     | job 6965384447 has completed (purged errors)
[2026-01-10 10:17:47] 2026-01-10 15:17:15,218 | INFO     | overall cleanup function is called
[2026-01-10 10:17:47] 2026-01-10 15:17:16,235 | INFO     | --- collectZombieJob: --- 10, [889444]
[2026-01-10 10:17:47] 2026-01-10 15:17:16,235 | INFO     | zombie collector waiting for pid 889444
[2026-01-10 10:17:47] 2026-01-10 15:17:16,235 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 10:17:47] 2026-01-10 15:17:16,235 | INFO     | collected zombie processes
[2026-01-10 10:17:47] 2026-01-10 15:17:16,235 | INFO     | will attempt to kill all subprocesses of pid=889444
[2026-01-10 10:17:47] 2026-01-10 15:17:16,583 | INFO     | process IDs to be killed: [889444] (in reverse order)
[2026-01-10 10:17:47] 2026-01-10 15:17:16,676 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 10:17:47] 2026-01-10 15:17:16,676 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 10:17:47] 2026-01-10 15:17:16,690 | INFO     | did not find any defunct processes belonging to 889444
[2026-01-10 10:17:47] 2026-01-10 15:17:16,702 | INFO     | did not find any defunct processes belonging to 889444
[2026-01-10 10:17:47] 2026-01-10 15:17:16,702 | INFO     | ready for new job
[2026-01-10 10:17:47] 2026-01-10 15:17:16,702 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 10:17:47] 2026-01-10 15:17:16,704 | INFO     | ***************************************
[2026-01-10 10:17:47] 2026-01-10 15:17:16,704 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 10:17:47] 2026-01-10 15:17:16,704 | INFO     | ***************************************
[2026-01-10 10:17:47] 2026-01-10 15:17:16,704 | INFO     | 
[2026-01-10 10:17:47] 2026-01-10 15:17:16,706 | INFO     | architecture information:
[2026-01-10 10:17:47] 2026-01-10 15:17:16,707 | INFO     | executing command: cat /etc/os-release
[2026-01-10 10:17:47] 2026-01-10 15:17:16,723 | INFO     | cat /etc/os-release:
[2026-01-10 10:17:47] NAME="CentOS Linux"
[2026-01-10 10:17:47] VERSION="7 (Core)"
[2026-01-10 10:17:47] ID="centos"
[2026-01-10 10:17:47] ID_LIKE="rhel fedora"
[2026-01-10 10:17:47] VERSION_ID="7"
[2026-01-10 10:17:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 10:17:47] ANSI_COLOR="0;31"
[2026-01-10 10:17:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 10:17:47] HOME_URL="https://www.centos.org/"
[2026-01-10 10:17:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 10:17:47] 
[2026-01-10 10:17:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 10:17:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 10:17:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 10:17:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 10:17:47] 
[2026-01-10 10:17:47] 2026-01-10 15:17:16,724 | INFO     | ***************************************
[2026-01-10 10:17:47] 2026-01-10 15:17:17,227 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-10 10:17:47] 2026-01-10 15:17:17,243 | INFO     | sufficient remaining disk space (96381960192 B)
[2026-01-10 10:17:47] 2026-01-10 15:17:17,244 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 10:17:47] 2026-01-10 15:17:17,244 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 10:17:47] 2026-01-10 15:17:17,244 | INFO     | update_server=False
[2026-01-10 10:17:47] 2026-01-10 15:17:17,244 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 10:17:47] 2026-01-10 15:17:17,373 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 10:17:47] 2026-01-10 15:17:17,383 | INFO     | all payload control threads have been joined
[2026-01-10 10:17:47] 2026-01-10 15:17:17,871 | INFO     | all data control threads have been joined
[2026-01-10 10:17:47] 2026-01-10 15:17:18,090 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 10:17:47] 2026-01-10 15:17:18,090 | INFO     | aborting loop
[2026-01-10 10:17:47] 2026-01-10 15:17:18,249 | INFO     | [job] retrieve thread has finished
[2026-01-10 10:17:47] 2026-01-10 15:17:18,388 | INFO     | [payload] control thread has finished
[2026-01-10 10:17:47] 2026-01-10 15:17:18,489 | INFO     | all job control threads have been joined
[2026-01-10 10:17:47] 2026-01-10 15:17:18,876 | INFO     | [data] control thread has finished
[2026-01-10 10:17:47] 2026-01-10 15:17:18,891 | INFO     | [payload] validate_post thread has finished
[2026-01-10 10:17:47] 2026-01-10 15:17:18,900 | INFO     | [payload] failed_post thread has finished
[2026-01-10 10:17:47] 2026-01-10 15:17:18,938 | INFO     | [data] copytool_in thread has finished
[2026-01-10 10:17:47] 2026-01-10 15:17:19,095 | INFO     | [job] job monitor thread has finished
[2026-01-10 10:17:47] 2026-01-10 15:17:19,378 | INFO     | [data] copytool_out thread has finished
[2026-01-10 10:17:47] 2026-01-10 15:17:19,494 | INFO     | [job] control thread has finished
[2026-01-10 10:17:47] 2026-01-10 15:17:19,628 | INFO     | [job] validate thread has finished
[2026-01-10 10:17:47] 2026-01-10 15:17:19,676 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 10:17:47] 2026-01-10 15:17:19,677 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 10:17:47] 2026-01-10 15:17:19,690 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 10:17:47] 2026-01-10 15:17:19,985 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 10:17:47] 2026-01-10 15:17:20,204 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 10:17:47] 2026-01-10 15:17:21,209 | INFO     | [job] queue monitor thread has finished
[2026-01-10 10:17:47] 2026-01-10 15:17:23,990 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 10:17:47] 2026-01-10 15:17:27,822 | INFO     | job.realtimelogging is not enabled
[2026-01-10 10:17:47] 2026-01-10 15:17:28,827 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 10:17:47] 2026-01-10 15:17:31,737 | INFO     | [monitor] cgroup control has ended
[2026-01-10 10:17:47] 2026-01-10 15:17:32,854 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139657411831616)>', '<ExcThread(monitor, started 139656557487872)>']
[2026-01-10 10:17:47] 2026-01-10 15:17:37,879 | INFO     | all workflow threads have been joined
[2026-01-10 10:17:47] 2026-01-10 15:17:37,879 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 10:17:47] 2026-01-10 15:17:37,879 | INFO     | traces error code: 0
[2026-01-10 10:17:47] 2026-01-10 15:17:37,879 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 10:17:47] 2026-01-10 15:17:47,025 | INFO     | PID=882960 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 10:17:47] 2026-01-10 15:17:47,025 | INFO     | .. there are 17 such processes running
[2026-01-10 10:17:47] 2026-01-10 15:17:47,026 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 10:17:47] 2026-01-10 15:17:47,026 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 10:17:47] 2026-01-10 15:17:47,026 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 10:17:47] 2026-01-10 15:17:47,026 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 10:17:47] 2026-01-10 15:17:47,026 | CRITICAL | thread 'MainThread' is not alive
[2026-01-10 10:17:47] 2026-01-10 15:17:47,027 | INFO     | [monitor] control thread has ended
[2026-01-10 10:17:47] 2026-01-10 15:17:47,201 [wrapper] ==== pilot stdout END ====
[2026-01-10 10:17:47] 2026-01-10 15:17:47,204 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 10:17:47] 2026-01-10 15:17:47,206 [wrapper] pilotpid: 882960
[2026-01-10 10:17:47] 2026-01-10 15:17:47,209 [wrapper] Pilot exit status: 0
[2026-01-10 10:17:47] 2026-01-10 15:17:47,220 [wrapper] pandaids: 6965384447
[2026-01-10 10:17:47] 2026-01-10 15:17:47,287 [wrapper] cleanup supervisor_pilot 1017518 882961
[2026-01-10 10:17:47] 2026-01-10 15:17:47,290 [wrapper] Test setup, not cleaning
[2026-01-10 10:17:47] 2026-01-10 15:17:47,293 [wrapper] apfmon messages muted
[2026-01-10 10:17:47] 2026-01-10 15:17:47,296 [wrapper] ==== wrapper stdout END ====
[2026-01-10 10:17:47] 2026-01-10 15:17:47,298 [wrapper] ==== wrapper stderr END ====
[2026-01-10 10:17:47]  *** Error codes and diagnostics ***
[2026-01-10 10:17:47]     "exeErrorCode": 0,
[2026-01-10 10:17:47]     "exeErrorDiag": "",
[2026-01-10 10:17:47]     "pilotErrorCode": 0,
[2026-01-10 10:17:47]     "pilotErrorDiag": "",
[2026-01-10 10:17:47]  *** Listing of results directory ***
[2026-01-10 10:17:47] total 434600
[2026-01-10 10:17:47] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:14 pilot3.tar.gz
[2026-01-10 10:17:47] -rwx------. 1 boincer umatlas     36322 Jan 10 08:14 runpilot2-wrapper.sh
[2026-01-10 10:17:47] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:15 queuedata.json
[2026-01-10 10:17:47] -rw-r--r--. 1 boincer umatlas       100 Jan 10 09:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 10:17:47] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 09:26 run_atlas
[2026-01-10 10:17:47] -rw-r--r--. 1 boincer umatlas       105 Jan 10 09:26 job.xml
[2026-01-10 10:17:47] -rw-r--r--. 2 boincer umatlas 392231449 Jan 10 09:26 EVNT.47962006._000115.pool.root.1
[2026-01-10 10:17:47] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 09:26 start_atlas.sh
[2026-01-10 10:17:47] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 09:26 shared
[2026-01-10 10:17:47] -rw-r--r--. 2 boincer umatlas    592613 Jan 10 09:26 input.tar.gz
[2026-01-10 10:17:47] -rw-r--r--. 1 boincer umatlas         0 Jan 10 09:26 boinc_lockfile
[2026-01-10 10:17:47] -rw-r--r--. 1 boincer umatlas      2891 Jan 10 09:26 pandaJob.out
[2026-01-10 10:17:47] -rw-------. 1 boincer umatlas        57 Jan 10 09:26 setup.sh.local
[2026-01-10 10:17:47] -rw-------. 1 boincer umatlas    989556 Jan 10 09:26 agis_schedconf.cvmfs.json
[2026-01-10 10:17:47] -rw-------. 1 boincer umatlas   1516240 Jan 10 09:26 agis_ddmendpoints.agis.ALL.json
[2026-01-10 10:17:47] drwx------. 5 boincer umatlas      4096 Jan 10 09:26 pilot3
[2026-01-10 10:17:47] -rw-r--r--. 1 boincer umatlas       530 Jan 10 10:07 boinc_task_state.xml
[2026-01-10 10:17:47] -rw-r--r--. 1 boincer umatlas      6659 Jan 10 10:13 init_data.xml
[2026-01-10 10:17:47] -rw-------. 1 boincer umatlas  44954889 Jan 10 10:16 HITS.47962010._002583.pool.root.1
[2026-01-10 10:17:47] -rw-------. 1 boincer umatlas      1038 Jan 10 10:17 memory_monitor_summary.json
[2026-01-10 10:17:47] -rw-------. 1 boincer umatlas   1497034 Jan 10 10:17 log.47962010._002583.job.log.tgz.1
[2026-01-10 10:17:47] -rw-------. 1 boincer umatlas      8567 Jan 10 10:17 heartbeat.json
[2026-01-10 10:17:47] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 10:17 boinc_mmap_file
[2026-01-10 10:17:47] -rw-r--r--. 1 boincer umatlas        27 Jan 10 10:17 wrapper_checkpoint.txt
[2026-01-10 10:17:47] -rw-------. 1 boincer umatlas        95 Jan 10 10:17 pilot_heartbeat.json
[2026-01-10 10:17:47] -rw-------. 1 boincer umatlas       892 Jan 10 10:17 pilotlog.txt
[2026-01-10 10:17:47] -rw-------. 1 boincer umatlas    467233 Jan 10 10:17 log.47962010._002583.job.log.1
[2026-01-10 10:17:47] -rw-------. 1 boincer umatlas       353 Jan 10 10:17 output.list
[2026-01-10 10:17:47] -rw-r--r--. 1 boincer umatlas       620 Jan 10 10:17 runtime_log
[2026-01-10 10:17:47] -rw-------. 1 boincer umatlas   1986560 Jan 10 10:17 result.tar.gz
[2026-01-10 10:17:47] -rw-r--r--. 1 boincer umatlas      9334 Jan 10 10:17 runtime_log.err
[2026-01-10 10:17:47] -rw-------. 1 boincer umatlas       651 Jan 10 10:17 8T6LDmSyny8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmzZhKDmBy3d3m.diag
[2026-01-10 10:17:47] -rw-r--r--. 1 boincer umatlas     21717 Jan 10 10:17 stderr.txt
[2026-01-10 10:17:47] HITS file was successfully produced:
[2026-01-10 10:17:47] -rw-------. 1 boincer umatlas 44954889 Jan 10 10:16 shared/HITS.pool.root.1
[2026-01-10 10:17:47]  *** Contents of shared directory: ***
[2026-01-10 10:17:47] total 429480
[2026-01-10 10:17:47] -rw-r--r--. 2 boincer umatlas 392231449 Jan 10 09:26 ATLAS.root_0
[2026-01-10 10:17:47] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 09:26 start_atlas.sh
[2026-01-10 10:17:47] -rw-r--r--. 2 boincer umatlas    592613 Jan 10 09:26 input.tar.gz
[2026-01-10 10:17:47] -rw-------. 1 boincer umatlas  44954889 Jan 10 10:16 HITS.pool.root.1
[2026-01-10 10:17:47] -rw-------. 1 boincer umatlas   1986560 Jan 10 10:17 result.tar.gz
10:17:48 (879288): run_atlas exited; CPU time 17779.240383
10:17:48 (879288): called boinc_finish(0)

</stderr_txt>
]]>

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