Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:24:40 (7049): wrapper (7.7.26015): starting
14:24:40 (7049): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 14:24:40] Arguments: --nthreads 8
[2026-01-10 14:24:40] Threads: 8
[2026-01-10 14:24:40] Checking for CVMFS
[2026-01-10 14:24:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 14:24:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 14:24:42] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 14:24:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 14:24:46] 2.11.2.0 21704 36912 131540 154981 1 11 19814357 25165825 899 130560 0 17969254 99.814 11981211 3014 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-10 14:24:46] CVMFS is ok
[2026-01-10 14:24:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 14:24:47] Checking for apptainer binary...
[2026-01-10 14:24:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 14:24:47] Running /usr/bin/apptainer --version
[2026-01-10 14:24:47] apptainer version 1.3.2-1.el7
[2026-01-10 14:24:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 14:25:15] cg-vwn497.simple-grid.lan
[2026-01-10 14:25:15] apptainer works
[2026-01-10 14:25:15] Set ATHENA_PROC_NUMBER=8
[2026-01-10 14:25:15] Set ATHENA_CORE_NUMBER=8
[2026-01-10 14:25:15] Starting ATLAS job with PandaID=6965384414
[2026-01-10 14:25:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 16:57:10]  *** The last 200 lines of the pilot log: ***
[2026-01-10 16:57:10] 2026-01-10 15:56:21,906 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 16:57:10] 2026-01-10 15:56:22,029 | INFO     | time since job start (8809s) is within the limit (349056.0s)
[2026-01-10 16:57:10] 2026-01-10 15:56:24,035 | INFO     | time since job start (8811s) is within the limit (349056.0s)
[2026-01-10 16:57:10] 2026-01-10 15:56:24,414 | INFO     | monitor loop #708: job 0:6965384414 is in state 'finished'
[2026-01-10 16:57:10] 2026-01-10 15:56:24,414 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 16:57:10] 2026-01-10 15:56:25,167 | INFO     | PID=11012 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 16:57:10] 2026-01-10 15:56:25,167 | INFO     | .. there are 2 such processes running
[2026-01-10 16:57:10] 2026-01-10 15:56:26,168 | INFO     | time since job start (8813s) is within the limit (349056.0s)
[2026-01-10 16:57:10] 2026-01-10 15:56:26,919 | INFO     | monitor loop #709: job 0:6965384414 is in state 'finished'
[2026-01-10 16:57:10] 2026-01-10 15:56:26,919 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 16:57:10] 2026-01-10 15:56:28,175 | INFO     | time since job start (8815s) is within the limit (349056.0s)
[2026-01-10 16:57:10] 2026-01-10 15:56:29,428 | INFO     | monitor loop #710: job 0:6965384414 is in state 'finished'
[2026-01-10 16:57:10] 2026-01-10 15:56:29,428 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 16:57:10] 2026-01-10 15:56:30,184 | INFO     | time since job start (8817s) is within the limit (349056.0s)
[2026-01-10 16:57:10] 2026-01-10 15:56:31,933 | INFO     | monitor loop #711: job 0:6965384414 is in state 'finished'
[2026-01-10 16:57:10] 2026-01-10 15:56:31,933 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 16:57:10] 2026-01-10 15:56:32,191 | INFO     | time since job start (8819s) is within the limit (349056.0s)
[2026-01-10 16:57:10] 2026-01-10 15:56:32,841 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 16:57:10] 2026-01-10 15:56:32,842 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-10 16:57:10] 2026-01-10 15:56:32,843 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6965384414/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 16:57:10] 2026-01-10 15:56:32,844 | INFO     | extracted standard info from prmon json
[2026-01-10 16:57:10] 2026-01-10 15:56:32,844 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 16:57:10] 2026-01-10 15:56:32,844 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 16:57:10] 2026-01-10 15:56:32,848 | INFO     | fitting pss+swap vs Time
[2026-01-10 16:57:10] 2026-01-10 15:56:32,848 | INFO     | sum of square deviations: 745968580.9253707
[2026-01-10 16:57:10] 2026-01-10 15:56:32,849 | INFO     | sum of deviations: -17643317547.477627
[2026-01-10 16:57:10] 2026-01-10 15:56:32,849 | INFO     | mean x: 1768056384.0895522
[2026-01-10 16:57:10] 2026-01-10 15:56:32,849 | INFO     | mean y: 1860343.3731343283
[2026-01-10 16:57:10] 2026-01-10 15:56:32,849 | INFO     | intersect: 41819144641.916306
[2026-01-10 16:57:10] 2026-01-10 15:56:32,850 | INFO     | chi2: 36.01984934305978
[2026-01-10 16:57:10] 2026-01-10 15:56:32,850 | INFO     | sum of square deviations: 665553956.6201541
[2026-01-10 16:57:10] 2026-01-10 15:56:32,851 | INFO     | sum of deviations: 11093624749.100712
[2026-01-10 16:57:10] 2026-01-10 15:56:32,851 | INFO     | mean x: 1768056231.6124032
[2026-01-10 16:57:10] 2026-01-10 15:56:32,851 | INFO     | mean y: 1914815.0620155039
[2026-01-10 16:57:10] 2026-01-10 15:56:32,851 | INFO     | intersect: -29468501781.09581
[2026-01-10 16:57:10] 2026-01-10 15:56:32,852 | INFO     | chi2: 31.636038108537672
[2026-01-10 16:57:10] 2026-01-10 15:56:32,852 | INFO     | current chi2=31.636038108537672 (change=12.170542949166366 %)
[2026-01-10 16:57:10] 2026-01-10 15:56:32,860 | INFO     | right removable region: 128
[2026-01-10 16:57:10] 2026-01-10 15:56:32,860 | INFO     | sum of square deviations: 665505766.6201541
[2026-01-10 16:57:10] 2026-01-10 15:56:32,861 | INFO     | sum of deviations: -54908448138.44189
[2026-01-10 16:57:10] 2026-01-10 15:56:32,861 | INFO     | mean x: 1768056536.6124032
[2026-01-10 16:57:10] 2026-01-10 15:56:32,861 | INFO     | mean y: 1930977.6511627906
[2026-01-10 16:57:10] 2026-01-10 15:56:32,862 | INFO     | intersect: 145877812924.47983
[2026-01-10 16:57:10] 2026-01-10 15:56:32,862 | INFO     | chi2: 28.165273611397264
[2026-01-10 16:57:10] 2026-01-10 15:56:32,862 | INFO     | current chi2=28.165273611397264 (change=21.806242599334798 %)
[2026-01-10 16:57:10] 2026-01-10 15:56:32,862 | INFO     | left removable region: 10
[2026-01-10 16:57:10] 2026-01-10 15:56:32,862 | INFO     | sum of square deviations: 509338350.6101688
[2026-01-10 16:57:10] 2026-01-10 15:56:32,863 | INFO     | sum of deviations: -51796840243.32205
[2026-01-10 16:57:10] 2026-01-10 15:56:32,863 | INFO     | mean x: 1768056506.1694915
[2026-01-10 16:57:10] 2026-01-10 15:56:32,863 | INFO     | mean y: 2077571.4661016949
[2026-01-10 16:57:10] 2026-01-10 15:56:32,864 | INFO     | intersect: 179803461624.9506
[2026-01-10 16:57:10] 2026-01-10 15:56:32,864 | INFO     | chi2: 17.690434856770462
[2026-01-10 16:57:10] 2026-01-10 15:56:32,864 | INFO     | current memory leak: -101.69 B/s (using 118 data points, chi2=17.69)
[2026-01-10 16:57:10] 2026-01-10 15:56:32,865 | INFO     | could have reported an average CPU frequency of 2249 MHz (8 samples)
[2026-01-10 16:57:10] 2026-01-10 15:56:32,865 | INFO     | ..............................
[2026-01-10 16:57:10] 2026-01-10 15:56:32,865 | INFO     | . Timing measurements:
[2026-01-10 16:57:10] 2026-01-10 15:56:32,865 | INFO     | . get job = 0 s
[2026-01-10 16:57:10] 2026-01-10 15:56:32,865 | INFO     | . initial setup = 8 s
[2026-01-10 16:57:10] 2026-01-10 15:56:32,865 | INFO     | . payload setup = 187 s
[2026-01-10 16:57:10] 2026-01-10 15:56:32,865 | INFO     | . stage-in = 0 s
[2026-01-10 16:57:10] 2026-01-10 15:56:32,865 | INFO     | . payload execution = 8314 s
[2026-01-10 16:57:10] 2026-01-10 15:56:32,866 | INFO     | . stage-out = 3 s
[2026-01-10 16:57:10] 2026-01-10 15:56:32,866 | INFO     | . log creation = 2 s
[2026-01-10 16:57:10] 2026-01-10 15:56:32,866 | INFO     | ..............................
[2026-01-10 16:57:10] 2026-01-10 15:56:33,456 | INFO     | 
[2026-01-10 16:57:10] 2026-01-10 15:56:33,456 | INFO     | job summary report
[2026-01-10 16:57:10] 2026-01-10 15:56:33,456 | INFO     | --------------------------------------------------
[2026-01-10 16:57:10] 2026-01-10 15:56:33,457 | INFO     | PanDA job id: 6965384414
[2026-01-10 16:57:10] 2026-01-10 15:56:33,457 | INFO     | task id: 47962010
[2026-01-10 16:57:10] 2026-01-10 15:56:33,457 | INFO     | errors: (none)
[2026-01-10 16:57:10] 2026-01-10 15:56:33,457 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 16:57:10] 2026-01-10 15:56:33,457 | INFO     | pilot state: finished 
[2026-01-10 16:57:10] 2026-01-10 15:56:33,457 | INFO     | transexitcode: 0
[2026-01-10 16:57:10] 2026-01-10 15:56:33,457 | INFO     | exeerrorcode: 0
[2026-01-10 16:57:10] 2026-01-10 15:56:33,458 | INFO     | exeerrordiag: 
[2026-01-10 16:57:10] 2026-01-10 15:56:33,458 | INFO     | exitcode: 0
[2026-01-10 16:57:10] 2026-01-10 15:56:33,458 | INFO     | exitmsg: OK
[2026-01-10 16:57:10] 2026-01-10 15:56:33,458 | INFO     | cpuconsumptiontime: 20260 s
[2026-01-10 16:57:10] 2026-01-10 15:56:33,458 | INFO     | nevents: 50
[2026-01-10 16:57:10] 2026-01-10 15:56:33,458 | INFO     | neventsw: 0
[2026-01-10 16:57:10] 2026-01-10 15:56:33,458 | INFO     | pid: 17506
[2026-01-10 16:57:10] 2026-01-10 15:56:33,458 | INFO     | pgrp: 17506
[2026-01-10 16:57:10] 2026-01-10 15:56:33,458 | INFO     | corecount: 8
[2026-01-10 16:57:10] 2026-01-10 15:56:33,458 | INFO     | event service: False
[2026-01-10 16:57:10] 2026-01-10 15:56:33,458 | INFO     | sizes: {0: 2284345, 1: 2284600, 12: 2284600, 23: 2284628, 33: 2284656, 44: 2284712, 55: 2284868, 66: 2284896, 76: 2284924, 87: 2284980, 96: 2285270, 98: 2285578, 8
[2026-01-10 16:57:10] 2026-01-10 15:56:33,459 | INFO     | --------------------------------------------------
[2026-01-10 16:57:10] 2026-01-10 15:56:33,459 | INFO     | 
[2026-01-10 16:57:10] 2026-01-10 15:56:33,459 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2026-01-10 16:57:10] 2026-01-10 15:56:33,967 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 16:57:10] 2026-01-10 15:56:33,968 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 16:57:10] 2026-01-10 15:56:33,968 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 16:57:10] 2026-01-10 15:56:33,968 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 16:57:10] 2026-01-10 15:56:33,968 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 16:57:10] 2026-01-10 15:56:33,968 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 16:57:10] 2026-01-10 15:56:33,968 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 16:57:10] 2026-01-10 15:56:33,968 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 16:57:10] 2026-01-10 15:56:33,968 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 16:57:10] 2026-01-10 15:56:33,969 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 16:57:10] 2026-01-10 15:56:33,969 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 16:57:10] 2026-01-10 15:56:33,969 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 16:57:10] 2026-01-10 15:56:33,969 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 16:57:10] 2026-01-10 15:56:33,969 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 16:57:10] 2026-01-10 15:56:33,969 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 16:57:10] 2026-01-10 15:56:33,969 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 16:57:10] 2026-01-10 15:56:33,969 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 16:57:10] 2026-01-10 15:56:33,969 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 16:57:10] 2026-01-10 15:56:33,969 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 16:57:10] 2026-01-10 15:56:33,970 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 16:57:10] 2026-01-10 15:56:33,970 | INFO     | job 6965384414 has completed (purged errors)
[2026-01-10 16:57:10] 2026-01-10 15:56:33,970 | INFO     | overall cleanup function is called
[2026-01-10 16:57:10] 2026-01-10 15:56:34,989 | INFO     | --- collectZombieJob: --- 10, [17506]
[2026-01-10 16:57:10] 2026-01-10 15:56:34,989 | INFO     | zombie collector waiting for pid 17506
[2026-01-10 16:57:10] 2026-01-10 15:56:34,989 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 16:57:10] 2026-01-10 15:56:34,989 | INFO     | collected zombie processes
[2026-01-10 16:57:10] 2026-01-10 15:56:34,990 | INFO     | will attempt to kill all subprocesses of pid=17506
[2026-01-10 16:57:10] 2026-01-10 15:56:35,073 | INFO     | process IDs to be killed: [17506] (in reverse order)
[2026-01-10 16:57:10] 2026-01-10 15:56:36,027 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 16:57:10] 2026-01-10 15:56:36,027 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 16:57:10] 2026-01-10 15:56:36,029 | INFO     | did not find any defunct processes belonging to 17506
[2026-01-10 16:57:10] 2026-01-10 15:56:36,031 | INFO     | did not find any defunct processes belonging to 17506
[2026-01-10 16:57:10] 2026-01-10 15:56:36,031 | INFO     | ready for new job
[2026-01-10 16:57:10] 2026-01-10 15:56:36,031 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 16:57:10] 2026-01-10 15:56:36,033 | INFO     | ***************************************
[2026-01-10 16:57:10] 2026-01-10 15:56:36,033 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 16:57:10] 2026-01-10 15:56:36,033 | INFO     | ***************************************
[2026-01-10 16:57:10] 2026-01-10 15:56:36,033 | INFO     | 
[2026-01-10 16:57:10] 2026-01-10 15:56:36,034 | INFO     | pilot is running in a VM
[2026-01-10 16:57:10] 2026-01-10 15:56:36,034 | INFO     | architecture information:
[2026-01-10 16:57:10] 2026-01-10 15:56:36,036 | INFO     | executing command: cat /etc/os-release
[2026-01-10 16:57:10] 2026-01-10 15:56:36,418 | INFO     | cat /etc/os-release:
[2026-01-10 16:57:10] NAME="CentOS Linux"
[2026-01-10 16:57:10] VERSION="7 (Core)"
[2026-01-10 16:57:10] ID="centos"
[2026-01-10 16:57:10] ID_LIKE="rhel fedora"
[2026-01-10 16:57:10] VERSION_ID="7"
[2026-01-10 16:57:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 16:57:10] ANSI_COLOR="0;31"
[2026-01-10 16:57:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 16:57:10] HOME_URL="https://www.centos.org/"
[2026-01-10 16:57:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 16:57:10] 
[2026-01-10 16:57:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 16:57:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 16:57:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 16:57:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 16:57:10] 
[2026-01-10 16:57:10] 2026-01-10 15:56:36,419 | INFO     | ***************************************
[2026-01-10 16:57:10] 2026-01-10 15:56:36,922 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2026-01-10 16:57:10] 2026-01-10 15:56:37,094 | INFO     | sufficient remaining disk space (497471717376 B)
[2026-01-10 16:57:10] 2026-01-10 15:56:37,095 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 16:57:10] 2026-01-10 15:56:37,095 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 16:57:10] 2026-01-10 15:56:37,095 | INFO     | update_server=False
[2026-01-10 16:57:10] 2026-01-10 15:56:37,095 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 16:57:10] 2026-01-10 15:56:37,733 | INFO     | all data control threads have been joined
[2026-01-10 16:57:10] 2026-01-10 15:56:37,762 | INFO     | all payload control threads have been joined
[2026-01-10 16:57:10] 2026-01-10 15:56:37,812 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 16:57:10] 2026-01-10 15:56:37,830 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 16:57:10] 2026-01-10 15:56:37,961 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 16:57:10] 2026-01-10 15:56:37,961 | INFO     | aborting loop
[2026-01-10 16:57:10] 2026-01-10 15:56:38,021 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 16:57:10] 2026-01-10 15:56:38,101 | INFO     | [job] retrieve thread has finished
[2026-01-10 16:57:10] 2026-01-10 15:56:38,313 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 16:57:10] 2026-01-10 15:56:38,314 | INFO     | [data] copytool_in thread has finished
[2026-01-10 16:57:10] 2026-01-10 15:56:38,586 | INFO     | all job control threads have been joined
[2026-01-10 16:57:10] 2026-01-10 15:56:38,646 | INFO     | [payload] failed_post thread has finished
[2026-01-10 16:57:10] 2026-01-10 15:56:38,739 | INFO     | [data] control thread has finished
[2026-01-10 16:57:10] 2026-01-10 15:56:38,768 | INFO     | [payload] control thread has finished
[2026-01-10 16:57:10] 2026-01-10 15:56:38,871 | INFO     | [job] validate thread has finished
[2026-01-10 16:57:10] 2026-01-10 15:56:38,967 | INFO     | [job] job monitor thread has finished
[2026-01-10 16:57:10] 2026-01-10 15:56:39,027 | INFO     | [job] queue monitor thread has finished
[2026-01-10 16:57:10] 2026-01-10 15:56:39,246 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 16:57:10] 2026-01-10 15:56:39,325 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 16:57:10] 2026-01-10 15:56:39,326 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 16:57:10] 2026-01-10 15:56:39,592 | INFO     | [job] control thread has finished
[2026-01-10 16:57:10] 2026-01-10 15:56:39,679 | INFO     | [payload] validate_post thread has finished
[2026-01-10 16:57:10] 2026-01-10 15:56:39,837 | INFO     | [data] copytool_out thread has finished
[2026-01-10 16:57:10] 2026-01-10 15:56:41,821 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 16:57:10] 2026-01-10 15:56:47,310 | INFO     | [monitor] cgroup control has ended
[2026-01-10 16:57:10] 2026-01-10 15:56:48,830 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140292253235008)>', '<ExcThread(monitor, started 140291214407424)>']
[2026-01-10 16:57:10] 2026-01-10 15:56:53,856 | INFO     | all workflow threads have been joined
[2026-01-10 16:57:10] 2026-01-10 15:56:53,856 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 16:57:10] 2026-01-10 15:56:53,856 | INFO     | traces error code: 0
[2026-01-10 16:57:10] 2026-01-10 15:56:53,857 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 16:57:10] 2026-01-10 15:57:05,306 | INFO     | PID=11012 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 16:57:10] 2026-01-10 15:57:05,306 | INFO     | .. there are 2 such processes running
[2026-01-10 16:57:10] 2026-01-10 15:57:05,307 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 16:57:10] 2026-01-10 15:57:05,308 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 16:57:10] 2026-01-10 15:57:05,308 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 16:57:10] 2026-01-10 15:57:05,308 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 16:57:10] 2026-01-10 15:57:05,308 | INFO     | [monitor] control thread has ended
[2026-01-10 16:57:10] 2026-01-10 15:57:05,596 [wrapper] ==== pilot stdout END ====
[2026-01-10 16:57:10] 2026-01-10 15:57:05,683 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 16:57:10] 2026-01-10 15:57:05,785 [wrapper] pilotpid: 11012
[2026-01-10 16:57:10] 2026-01-10 15:57:05,936 [wrapper] Pilot exit status: 0
[2026-01-10 16:57:10] 2026-01-10 15:57:06,354 [wrapper] pandaids: 6965384414
[2026-01-10 16:57:10] 2026-01-10 15:57:07,229 [wrapper] cleanup supervisor_pilot  2045 11013
[2026-01-10 16:57:10] 2026-01-10 15:57:07,322 [wrapper] Test setup, not cleaning
[2026-01-10 16:57:10] 2026-01-10 15:57:07,498 [wrapper] apfmon messages muted
[2026-01-10 16:57:10] 2026-01-10 15:57:07,619 [wrapper] ==== wrapper stdout END ====
[2026-01-10 16:57:10] 2026-01-10 15:57:07,695 [wrapper] ==== wrapper stderr END ====
[2026-01-10 16:57:10]  *** Error codes and diagnostics ***
[2026-01-10 16:57:10]     "exeErrorCode": 0,
[2026-01-10 16:57:10]     "exeErrorDiag": "",
[2026-01-10 16:57:10]     "pilotErrorCode": 0,
[2026-01-10 16:57:10]     "pilotErrorDiag": "",
[2026-01-10 16:57:10]  *** Listing of results directory ***
[2026-01-10 16:57:10] total 436596
[2026-01-10 16:57:10] -rw-r--r--. 1 boinc boinc    579449 Jan 10 14:14 pilot3.tar.gz
[2026-01-10 16:57:10] -rwx------. 1 boinc boinc     36322 Jan 10 14:14 runpilot2-wrapper.sh
[2026-01-10 16:57:10] -rw-r--r--. 1 boinc boinc      5112 Jan 10 14:15 queuedata.json
[2026-01-10 16:57:10] -rw-r--r--. 1 boinc boinc       100 Jan 10 14:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 16:57:10] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 14:24 run_atlas
[2026-01-10 16:57:10] -rw-r--r--. 1 boinc boinc       105 Jan 10 14:24 job.xml
[2026-01-10 16:57:10] -rw-r--r--. 1 boinc boinc      6390 Jan 10 14:24 init_data.xml
[2026-01-10 16:57:10] -rw-r--r--. 2 boinc boinc 392102156 Jan 10 14:24 EVNT.47962006._000112.pool.root.1
[2026-01-10 16:57:10] -rw-r--r--. 2 boinc boinc     15847 Jan 10 14:24 start_atlas.sh
[2026-01-10 16:57:10] drwxrwx--x. 2 boinc boinc        68 Jan 10 14:24 shared
[2026-01-10 16:57:10] -rw-r--r--. 2 boinc boinc    592622 Jan 10 14:24 input.tar.gz
[2026-01-10 16:57:10] -rw-r--r--. 1 boinc boinc         0 Jan 10 14:24 boinc_lockfile
[2026-01-10 16:57:10] -rw-r--r--. 1 boinc boinc      2891 Jan 10 14:25 pandaJob.out
[2026-01-10 16:57:10] -rw-------. 1 boinc boinc    989556 Jan 10 14:29 agis_schedconf.cvmfs.json
[2026-01-10 16:57:10] -rw-------. 1 boinc boinc   1516240 Jan 10 14:29 agis_ddmendpoints.agis.ALL.json
[2026-01-10 16:57:10] drwx------. 5 boinc boinc      4096 Jan 10 14:29 pilot3
[2026-01-10 16:57:10] -rw-r--r--. 1 boinc boinc       530 Jan 10 16:16 boinc_task_state.xml
[2026-01-10 16:57:10] -rw-------. 1 boinc boinc  46115395 Jan 10 16:53 HITS.47962010._002550.pool.root.1
[2026-01-10 16:57:10] -rw-------. 1 boinc boinc      1015 Jan 10 16:54 memory_monitor_summary.json
[2026-01-10 16:57:10] -rw-------. 1 boinc boinc   1268984 Jan 10 16:54 log.47962010._002550.job.log.tgz.1
[2026-01-10 16:57:10] -rw-------. 1 boinc boinc      7913 Jan 10 16:56 heartbeat.json
[2026-01-10 16:57:10] -rw-r--r--. 1 boinc boinc      8192 Jan 10 16:56 boinc_mmap_file
[2026-01-10 16:57:10] -rw-r--r--. 1 boinc boinc        27 Jan 10 16:56 wrapper_checkpoint.txt
[2026-01-10 16:57:10] -rw-------. 1 boinc boinc        95 Jan 10 16:57 pilot_heartbeat.json
[2026-01-10 16:57:10] -rw-------. 1 boinc boinc       820 Jan 10 16:57 pilotlog.txt
[2026-01-10 16:57:10] -rw-------. 1 boinc boinc   1214405 Jan 10 16:57 log.47962010._002550.job.log.1
[2026-01-10 16:57:10] -rw-------. 1 boinc boinc       353 Jan 10 16:57 output.list
[2026-01-10 16:57:10] -rw-r--r--. 1 boinc boinc       620 Jan 10 16:57 runtime_log
[2026-01-10 16:57:10] -rw-------. 1 boinc boinc   2498560 Jan 10 16:57 result.tar.gz
[2026-01-10 16:57:10] -rw-r--r--. 1 boinc boinc      8832 Jan 10 16:57 runtime_log.err
[2026-01-10 16:57:10] -rw-------. 1 boinc boinc       654 Jan 10 16:57 MFINDmayny8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmmbhKDmLHa5pm.diag
[2026-01-10 16:57:10] -rw-r--r--. 1 boinc boinc     21411 Jan 10 16:57 stderr.txt
[2026-01-10 16:57:11] HITS file was successfully produced:
[2026-01-10 16:57:11] -rw-------. 1 boinc boinc 46115395 Jan 10 16:53 shared/HITS.pool.root.1
[2026-01-10 16:57:11]  *** Contents of shared directory: ***
[2026-01-10 16:57:11] total 430988
[2026-01-10 16:57:11] -rw-r--r--. 2 boinc boinc 392102156 Jan 10 14:24 ATLAS.root_0
[2026-01-10 16:57:11] -rw-r--r--. 2 boinc boinc     15847 Jan 10 14:24 start_atlas.sh
[2026-01-10 16:57:11] -rw-r--r--. 2 boinc boinc    592622 Jan 10 14:24 input.tar.gz
[2026-01-10 16:57:11] -rw-------. 1 boinc boinc  46115395 Jan 10 16:53 HITS.pool.root.1
[2026-01-10 16:57:11] -rw-------. 1 boinc boinc   2498560 Jan 10 16:57 result.tar.gz
16:57:12 (7049): run_atlas exited; CPU time 20289.670570
16:57:12 (7049): called boinc_finish(0)

</stderr_txt>
]]>

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