Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:19:57 (184772): wrapper (7.7.26015): starting
09:19:57 (184772): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 09:19:57] Arguments: --nthreads 8
[2026-01-10 09:19:57] Threads: 8
[2026-01-10 09:19:57] Checking for CVMFS
[2026-01-10 09:19:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 09:19:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 09:19:58] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 09:19:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 09:19:59] 2.13.3.0 7542 24429 155512 154982 2 57 32173395 40960000 17652 16776704 0 39891563 99.791 24495611 44535 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 09:19:59] CVMFS is ok
[2026-01-10 09:19:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 09:19:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 09:19:59] Further information can be found at the LHC@home message board.
[2026-01-10 09:19:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 09:19:59] Checking for apptainer binary...
[2026-01-10 09:19:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 09:19:59] Running /usr/bin/apptainer --version
[2026-01-10 09:19:59] apptainer version 1.4.5-2.el9
[2026-01-10 09:19:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 09:20:00] c-212-6.aglt2.org
[2026-01-10 09:20:00] apptainer works
[2026-01-10 09:20:00] Set ATHENA_PROC_NUMBER=8
[2026-01-10 09:20:00] Set ATHENA_CORE_NUMBER=8
[2026-01-10 09:20:00] Starting ATLAS job with PandaID=6965384366
[2026-01-10 09:20:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 10:47:01]  *** The last 200 lines of the pilot log: ***
[2026-01-10 10:47:01]  protocol_id=None
[2026-01-10 10:47:01]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-10 10:47:01]  replicas=None
[2026-01-10 10:47:01]  scope=mc16_13TeV
[2026-01-10 10:47:01]  status=None
[2026-01-10 10:47:01]  status_code=0
[2026-01-10 10:47:01]  storage_token=
[2026-01-10 10:47:01]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6965384366/log.47962010._002502.job.log.tgz.1
[2026-01-10 10:47:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/58/c9/log.47962010._002502.job.log.tgz.1
[2026-01-10 10:47:01]  workdir=None
[2026-01-10 10:47:01] ]
[2026-01-10 10:47:01] 2026-01-10 15:46:21,606 | INFO     | transferring file log.47962010._002502.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6965384366/log.47962010._002502.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-10 10:47:01] 2026-01-10 15:46:21,606 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6965384366/log.47962010._002502.job.log.tgz.1 /tmp/boinchome/slots/3/log.47962010._002502.job
[2026-01-10 10:47:01] 2026-01-10 15:46:21,627 | INFO     | adding to output.list: log.47962010._002502.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/58/c9/log.47962010._002502.job.log.tgz.
[2026-01-10 10:47:01] 2026-01-10 15:46:21,628 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 10:47:01] 2026-01-10 15:46:21,628 | INFO     | summary of transferred files:
[2026-01-10 10:47:01] 2026-01-10 15:46:21,629 | INFO     |  -- lfn=log.47962010._002502.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 10:47:01] 2026-01-10 15:46:21,629 | INFO     | stage-out finished correctly
[2026-01-10 10:47:01] 2026-01-10 15:46:22,785 | INFO     | monitor loop #360: job 0:6965384366 is in state 'finished'
[2026-01-10 10:47:01] 2026-01-10 15:46:22,785 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:47:01] 2026-01-10 15:46:22,893 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 10:47:01] 2026-01-10 15:46:23,052 | INFO     | time since job start (5152s) is within the limit (349056.0s)
[2026-01-10 10:47:01] 2026-01-10 15:46:24,415 | INFO     | job 6965384366 has state=finished
[2026-01-10 10:47:01] 2026-01-10 15:46:24,416 | INFO     | preparing for final server update for job 6965384366 in state='finished'
[2026-01-10 10:47:01] 2026-01-10 15:46:24,417 | INFO     | this job has now completed (state=finished)
[2026-01-10 10:47:01] 2026-01-10 15:46:24,417 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 10:47:01] 2026-01-10 15:46:24,417 | INFO     | log transfer has been attempted: DONE
[2026-01-10 10:47:01] 2026-01-10 15:46:24,417 | INFO     | job 6965384366 has finished - writing final server update
[2026-01-10 10:47:01] 2026-01-10 15:46:24,418 | INFO     | total number of processed events: 50 (read)
[2026-01-10 10:47:01] 2026-01-10 15:46:24,419 | INFO     | executing command: lscpu
[2026-01-10 10:47:01] 2026-01-10 15:46:24,480 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 10:47:01] 2026-01-10 15:46:25,058 | INFO     | time since job start (5154s) is within the limit (349056.0s)
[2026-01-10 10:47:01] 2026-01-10 15:46:25,288 | INFO     | monitor loop #361: job 0:6965384366 is in state 'finished'
[2026-01-10 10:47:01] 2026-01-10 15:46:25,288 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:47:01] 2026-01-10 15:46:26,556 | INFO     | PID=190750 has CPU usage=11.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 10:47:01] 2026-01-10 15:46:26,556 | INFO     | .. there are 13 such processes running
[2026-01-10 10:47:01] 2026-01-10 15:46:27,556 | INFO     | time since job start (5156s) is within the limit (349056.0s)
[2026-01-10 10:47:01] 2026-01-10 15:46:27,797 | INFO     | monitor loop #362: job 0:6965384366 is in state 'finished'
[2026-01-10 10:47:01] 2026-01-10 15:46:27,797 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:47:01] 2026-01-10 15:46:28,672 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 10:47:01] 2026-01-10 15:46:28,678 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3103.467770833333
[2026-01-10 10:47:01] 2026-01-10 15:46:28,692 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6965384366/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 10:47:01] 2026-01-10 15:46:28,692 | INFO     | extracted standard info from prmon json
[2026-01-10 10:47:01] 2026-01-10 15:46:28,692 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 10:47:01] 2026-01-10 15:46:28,692 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 10:47:01] 2026-01-10 15:46:28,694 | INFO     | fitting pss+swap vs Time
[2026-01-10 10:47:01] 2026-01-10 15:46:28,694 | INFO     | sum of square deviations: 141472350.98701283
[2026-01-10 10:47:01] 2026-01-10 15:46:28,694 | INFO     | sum of deviations: 19760855317.285713
[2026-01-10 10:47:01] 2026-01-10 15:46:28,694 | INFO     | mean x: 1768057522.4415584
[2026-01-10 10:47:01] 2026-01-10 15:46:28,694 | INFO     | mean y: 2492837.285714286
[2026-01-10 10:47:01] 2026-01-10 15:46:28,694 | INFO     | intersect: -246959748546.64105
[2026-01-10 10:47:01] 2026-01-10 15:46:28,695 | INFO     | chi2: 1.5882679272581035
[2026-01-10 10:47:01] 2026-01-10 15:46:28,695 | INFO     | current memory leak: 139.68 B/s (using 77 data points, chi2=1.59)
[2026-01-10 10:47:01] 2026-01-10 15:46:28,695 | INFO     | could have reported an average CPU frequency of 3154 MHz (6 samples)
[2026-01-10 10:47:01] 2026-01-10 15:46:28,695 | INFO     | ..............................
[2026-01-10 10:47:01] 2026-01-10 15:46:28,695 | INFO     | . Timing measurements:
[2026-01-10 10:47:01] 2026-01-10 15:46:28,695 | INFO     | . get job = 0 s
[2026-01-10 10:47:01] 2026-01-10 15:46:28,695 | INFO     | . initial setup = 4 s
[2026-01-10 10:47:01] 2026-01-10 15:46:28,695 | INFO     | . payload setup = 11 s
[2026-01-10 10:47:01] 2026-01-10 15:46:28,695 | INFO     | . stage-in = 0 s
[2026-01-10 10:47:01] 2026-01-10 15:46:28,695 | INFO     | . payload execution = 5093 s
[2026-01-10 10:47:01] 2026-01-10 15:46:28,695 | INFO     | . stage-out = 0 s
[2026-01-10 10:47:01] 2026-01-10 15:46:28,695 | INFO     | . log creation = 0 s
[2026-01-10 10:47:01] 2026-01-10 15:46:28,695 | INFO     | ..............................
[2026-01-10 10:47:01] 2026-01-10 15:46:28,766 | INFO     | 
[2026-01-10 10:47:01] 2026-01-10 15:46:28,767 | INFO     | job summary report
[2026-01-10 10:47:01] 2026-01-10 15:46:28,767 | INFO     | --------------------------------------------------
[2026-01-10 10:47:01] 2026-01-10 15:46:28,767 | INFO     | PanDA job id: 6965384366
[2026-01-10 10:47:01] 2026-01-10 15:46:28,767 | INFO     | task id: 47962010
[2026-01-10 10:47:01] 2026-01-10 15:46:28,767 | INFO     | errors: (none)
[2026-01-10 10:47:01] 2026-01-10 15:46:28,767 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 10:47:01] 2026-01-10 15:46:28,767 | INFO     | pilot state: finished 
[2026-01-10 10:47:01] 2026-01-10 15:46:28,767 | INFO     | transexitcode: 0
[2026-01-10 10:47:01] 2026-01-10 15:46:28,767 | INFO     | exeerrorcode: 0
[2026-01-10 10:47:01] 2026-01-10 15:46:28,768 | INFO     | exeerrordiag: 
[2026-01-10 10:47:01] 2026-01-10 15:46:28,768 | INFO     | exitcode: 0
[2026-01-10 10:47:01] 2026-01-10 15:46:28,768 | INFO     | exitmsg: OK
[2026-01-10 10:47:01] 2026-01-10 15:46:28,768 | INFO     | cpuconsumptiontime: 10826 s
[2026-01-10 10:47:01] 2026-01-10 15:46:28,768 | INFO     | nevents: 50
[2026-01-10 10:47:01] 2026-01-10 15:46:28,768 | INFO     | neventsw: 0
[2026-01-10 10:47:01] 2026-01-10 15:46:28,768 | INFO     | pid: 199135
[2026-01-10 10:47:01] 2026-01-10 15:46:28,768 | INFO     | pgrp: 199135
[2026-01-10 10:47:01] 2026-01-10 15:46:28,768 | INFO     | corecount: 8
[2026-01-10 10:47:01] 2026-01-10 15:46:28,768 | INFO     | event service: False
[2026-01-10 10:47:01] 2026-01-10 15:46:28,768 | INFO     | sizes: {0: 2284398, 1: 2284597, 11: 2284597, 15: 2284887, 22: 2284915, 5107: 2312121, 5109: 2321115, 5110: 2321171, 5116: 2321417}
[2026-01-10 10:47:01] 2026-01-10 15:46:28,768 | INFO     | --------------------------------------------------
[2026-01-10 10:47:01] 2026-01-10 15:46:28,768 | INFO     | 
[2026-01-10 10:47:01] 2026-01-10 15:46:28,769 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-10 10:47:01] 2026-01-10 15:46:28,789 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 10:47:01] 2026-01-10 15:46:28,789 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 10:47:01] 2026-01-10 15:46:28,789 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 10:47:01] 2026-01-10 15:46:28,789 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 10:47:01] 2026-01-10 15:46:28,789 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 10:47:01] 2026-01-10 15:46:28,790 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 10:47:01] 2026-01-10 15:46:28,790 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 10:47:01] 2026-01-10 15:46:28,790 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 10:47:01] 2026-01-10 15:46:28,790 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 10:47:01] 2026-01-10 15:46:28,790 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 10:47:01] 2026-01-10 15:46:28,790 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 10:47:01] 2026-01-10 15:46:28,790 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 10:47:01] 2026-01-10 15:46:28,790 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 10:47:01] 2026-01-10 15:46:28,790 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 10:47:01] 2026-01-10 15:46:28,790 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 10:47:01] 2026-01-10 15:46:28,790 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 10:47:01] 2026-01-10 15:46:28,790 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 10:47:01] 2026-01-10 15:46:28,790 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 10:47:01] 2026-01-10 15:46:28,791 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 10:47:01] 2026-01-10 15:46:28,791 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 10:47:01] 2026-01-10 15:46:28,791 | INFO     | job 6965384366 has completed (purged errors)
[2026-01-10 10:47:01] 2026-01-10 15:46:28,791 | INFO     | overall cleanup function is called
[2026-01-10 10:47:01] 2026-01-10 15:46:29,806 | INFO     | --- collectZombieJob: --- 10, [199135]
[2026-01-10 10:47:01] 2026-01-10 15:46:29,806 | INFO     | zombie collector waiting for pid 199135
[2026-01-10 10:47:01] 2026-01-10 15:46:29,806 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 10:47:01] 2026-01-10 15:46:29,807 | INFO     | collected zombie processes
[2026-01-10 10:47:01] 2026-01-10 15:46:29,807 | INFO     | will attempt to kill all subprocesses of pid=199135
[2026-01-10 10:47:01] 2026-01-10 15:46:30,143 | INFO     | process IDs to be killed: [199135] (in reverse order)
[2026-01-10 10:47:01] 2026-01-10 15:46:30,263 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 10:47:01] 2026-01-10 15:46:30,263 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 10:47:01] 2026-01-10 15:46:30,278 | INFO     | did not find any defunct processes belonging to 199135
[2026-01-10 10:47:01] 2026-01-10 15:46:30,292 | INFO     | did not find any defunct processes belonging to 199135
[2026-01-10 10:47:01] 2026-01-10 15:46:30,292 | INFO     | ready for new job
[2026-01-10 10:47:01] 2026-01-10 15:46:30,292 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 10:47:01] 2026-01-10 15:46:30,294 | INFO     | ***************************************
[2026-01-10 10:47:01] 2026-01-10 15:46:30,295 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 10:47:01] 2026-01-10 15:46:30,295 | INFO     | ***************************************
[2026-01-10 10:47:01] 2026-01-10 15:46:30,295 | INFO     | 
[2026-01-10 10:47:01] 2026-01-10 15:46:30,307 | INFO     | architecture information:
[2026-01-10 10:47:01] 2026-01-10 15:46:30,308 | INFO     | executing command: cat /etc/os-release
[2026-01-10 10:47:01] 2026-01-10 15:46:30,333 | INFO     | cat /etc/os-release:
[2026-01-10 10:47:01] NAME="CentOS Linux"
[2026-01-10 10:47:01] VERSION="7 (Core)"
[2026-01-10 10:47:01] ID="centos"
[2026-01-10 10:47:01] ID_LIKE="rhel fedora"
[2026-01-10 10:47:01] VERSION_ID="7"
[2026-01-10 10:47:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 10:47:01] ANSI_COLOR="0;31"
[2026-01-10 10:47:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 10:47:01] HOME_URL="https://www.centos.org/"
[2026-01-10 10:47:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 10:47:01] 
[2026-01-10 10:47:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 10:47:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 10:47:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 10:47:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 10:47:01] 
[2026-01-10 10:47:01] 2026-01-10 15:46:30,334 | INFO     | ***************************************
[2026-01-10 10:47:01] 2026-01-10 15:46:30,836 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-10 10:47:01] 2026-01-10 15:46:30,855 | INFO     | sufficient remaining disk space (129618673664 B)
[2026-01-10 10:47:01] 2026-01-10 15:46:30,855 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 10:47:01] 2026-01-10 15:46:30,855 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 10:47:01] 2026-01-10 15:46:30,855 | INFO     | update_server=False
[2026-01-10 10:47:01] 2026-01-10 15:46:30,855 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 10:47:01] 2026-01-10 15:46:31,009 | INFO     | all data control threads have been joined
[2026-01-10 10:47:01] 2026-01-10 15:46:31,313 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 10:47:01] 2026-01-10 15:46:31,313 | INFO     | aborting loop
[2026-01-10 10:47:01] 2026-01-10 15:46:31,720 | INFO     | all payload control threads have been joined
[2026-01-10 10:47:01] 2026-01-10 15:46:31,861 | INFO     | [job] retrieve thread has finished
[2026-01-10 10:47:01] 2026-01-10 15:46:31,903 | INFO     | [payload] failed_post thread has finished
[2026-01-10 10:47:01] 2026-01-10 15:46:31,997 | INFO     | all job control threads have been joined
[2026-01-10 10:47:01] 2026-01-10 15:46:32,014 | INFO     | [data] control thread has finished
[2026-01-10 10:47:01] 2026-01-10 15:46:32,060 | INFO     | [job] validate thread has finished
[2026-01-10 10:47:01] 2026-01-10 15:46:32,061 | INFO     | [data] copytool_in thread has finished
[2026-01-10 10:47:01] 2026-01-10 15:46:32,072 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 10:47:01] 2026-01-10 15:46:32,176 | INFO     | [payload] validate_post thread has finished
[2026-01-10 10:47:01] 2026-01-10 15:46:32,239 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 10:47:01] 2026-01-10 15:46:32,318 | INFO     | [job] job monitor thread has finished
[2026-01-10 10:47:01] 2026-01-10 15:46:32,671 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 10:47:01] 2026-01-10 15:46:32,721 | INFO     | [payload] control thread has finished
[2026-01-10 10:47:01] 2026-01-10 15:46:32,890 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 10:47:01] 2026-01-10 15:46:33,002 | INFO     | [job] control thread has finished
[2026-01-10 10:47:01] 2026-01-10 15:46:33,104 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 10:47:01] 2026-01-10 15:46:33,476 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 10:47:01] 2026-01-10 15:46:33,777 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 10:47:01] 2026-01-10 15:46:34,244 | INFO     | [data] copytool_out thread has finished
[2026-01-10 10:47:01] 2026-01-10 15:46:34,783 | INFO     | [job] queue monitor thread has finished
[2026-01-10 10:47:01] 2026-01-10 15:46:37,485 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 10:47:01] 2026-01-10 15:46:38,882 | INFO     | [monitor] cgroup control has ended
[2026-01-10 10:47:01] 2026-01-10 15:46:40,599 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140589148919616)>', '<ExcThread(monitor, started 140588682823424)>']
[2026-01-10 10:47:01] 2026-01-10 15:46:45,625 | INFO     | all workflow threads have been joined
[2026-01-10 10:47:01] 2026-01-10 15:46:45,627 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 10:47:01] 2026-01-10 15:46:45,628 | INFO     | traces error code: 0
[2026-01-10 10:47:01] 2026-01-10 15:46:45,628 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 10:47:01] 2026-01-10 15:47:01,058 | INFO     | PID=190750 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 10:47:01] 2026-01-10 15:47:01,059 | INFO     | .. there are 13 such processes running
[2026-01-10 10:47:01] 2026-01-10 15:47:01,059 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 10:47:01] 2026-01-10 15:47:01,059 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 10:47:01] 2026-01-10 15:47:01,059 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 10:47:01] 2026-01-10 15:47:01,059 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 10:47:01] 2026-01-10 15:47:01,059 | CRITICAL | thread 'MainThread' is not alive
[2026-01-10 10:47:01] 2026-01-10 15:47:01,059 | INFO     | [monitor] control thread has ended
[2026-01-10 10:47:01] 2026-01-10 15:47:01,176 [wrapper] ==== pilot stdout END ====
[2026-01-10 10:47:01] 2026-01-10 15:47:01,179 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 10:47:01] 2026-01-10 15:47:01,182 [wrapper] pilotpid: 190750
[2026-01-10 10:47:01] 2026-01-10 15:47:01,185 [wrapper] Pilot exit status: 0
[2026-01-10 10:47:01] 2026-01-10 15:47:01,205 [wrapper] pandaids: 6965384366
[2026-01-10 10:47:01] 2026-01-10 15:47:01,297 [wrapper] cleanup supervisor_pilot  355797 190751
[2026-01-10 10:47:01] 2026-01-10 15:47:01,300 [wrapper] Test setup, not cleaning
[2026-01-10 10:47:01] 2026-01-10 15:47:01,303 [wrapper] apfmon messages muted
[2026-01-10 10:47:01] 2026-01-10 15:47:01,308 [wrapper] ==== wrapper stdout END ====
[2026-01-10 10:47:01] 2026-01-10 15:47:01,310 [wrapper] ==== wrapper stderr END ====
[2026-01-10 10:47:01]  *** Error codes and diagnostics ***
[2026-01-10 10:47:01]     "exeErrorCode": 0,
[2026-01-10 10:47:01]     "exeErrorDiag": "",
[2026-01-10 10:47:01]     "pilotErrorCode": 0,
[2026-01-10 10:47:01]     "pilotErrorDiag": "",
[2026-01-10 10:47:01]  *** Listing of results directory ***
[2026-01-10 10:47:01] total 433288
[2026-01-10 10:47:01] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:14 pilot3.tar.gz
[2026-01-10 10:47:01] -rwx------. 1 boincer umatlas     36322 Jan 10 08:14 runpilot2-wrapper.sh
[2026-01-10 10:47:01] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:15 queuedata.json
[2026-01-10 10:47:01] -rw-r--r--. 1 boincer umatlas       100 Jan 10 09:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 10:47:01] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 09:19 run_atlas
[2026-01-10 10:47:01] -rw-r--r--. 1 boincer umatlas       105 Jan 10 09:19 job.xml
[2026-01-10 10:47:01] -rw-r--r--. 2 boincer umatlas 392129520 Jan 10 09:19 EVNT.47962006._000023.pool.root.1
[2026-01-10 10:47:01] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 09:19 start_atlas.sh
[2026-01-10 10:47:01] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 09:19 shared
[2026-01-10 10:47:01] -rw-r--r--. 2 boincer umatlas    592622 Jan 10 09:19 input.tar.gz
[2026-01-10 10:47:01] -rw-r--r--. 1 boincer umatlas         0 Jan 10 09:19 boinc_lockfile
[2026-01-10 10:47:01] -rw-r--r--. 1 boincer umatlas      2890 Jan 10 09:20 pandaJob.out
[2026-01-10 10:47:01] -rw-------. 1 boincer umatlas        57 Jan 10 09:20 setup.sh.local
[2026-01-10 10:47:01] -rw-------. 1 boincer umatlas    989556 Jan 10 09:20 agis_schedconf.cvmfs.json
[2026-01-10 10:47:01] -rw-------. 1 boincer umatlas   1516240 Jan 10 09:20 agis_ddmendpoints.agis.ALL.json
[2026-01-10 10:47:01] drwx------. 5 boincer umatlas      4096 Jan 10 09:20 pilot3
[2026-01-10 10:47:01] -rw-r--r--. 1 boincer umatlas       529 Jan 10 10:40 boinc_task_state.xml
[2026-01-10 10:47:01] -rw-------. 1 boincer umatlas  43771926 Jan 10 10:46 HITS.47962010._002502.pool.root.1
[2026-01-10 10:47:01] -rw-------. 1 boincer umatlas      1031 Jan 10 10:46 memory_monitor_summary.json
[2026-01-10 10:47:01] -rw-------. 1 boincer umatlas        95 Jan 10 10:46 pilot_heartbeat.json
[2026-01-10 10:47:01] -rw-------. 1 boincer umatlas   1197586 Jan 10 10:46 log.47962010._002502.job.log.tgz.1
[2026-01-10 10:47:01] -rw-------. 1 boincer umatlas      8521 Jan 10 10:46 heartbeat.json
[2026-01-10 10:47:01] -rw-r--r--. 1 boincer umatlas      6956 Jan 10 10:46 init_data.xml
[2026-01-10 10:47:01] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 10:46 boinc_mmap_file
[2026-01-10 10:47:01] -rw-r--r--. 1 boincer umatlas        26 Jan 10 10:46 wrapper_checkpoint.txt
[2026-01-10 10:47:01] -rw-------. 1 boincer umatlas       892 Jan 10 10:47 pilotlog.txt
[2026-01-10 10:47:01] -rw-------. 1 boincer umatlas    736583 Jan 10 10:47 log.47962010._002502.job.log.1
[2026-01-10 10:47:01] -rw-------. 1 boincer umatlas       353 Jan 10 10:47 output.list
[2026-01-10 10:47:01] -rw-r--r--. 1 boincer umatlas       620 Jan 10 10:47 runtime_log
[2026-01-10 10:47:01] -rw-------. 1 boincer umatlas   1955840 Jan 10 10:47 result.tar.gz
[2026-01-10 10:47:01] -rw-r--r--. 1 boincer umatlas      9337 Jan 10 10:47 runtime_log.err
[2026-01-10 10:47:01] -rw-------. 1 boincer umatlas       652 Jan 10 10:47 NceMDmayny8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmIbhKDmjPwfEn.diag
[2026-01-10 10:47:01] -rw-r--r--. 1 boincer umatlas     21973 Jan 10 10:47 stderr.txt
[2026-01-10 10:47:01] HITS file was successfully produced:
[2026-01-10 10:47:01] -rw-------. 1 boincer umatlas 43771926 Jan 10 10:46 shared/HITS.pool.root.1
[2026-01-10 10:47:01]  *** Contents of shared directory: ***
[2026-01-10 10:47:01] total 428200
[2026-01-10 10:47:01] -rw-r--r--. 2 boincer umatlas 392129520 Jan 10 09:19 ATLAS.root_0
[2026-01-10 10:47:01] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 09:19 start_atlas.sh
[2026-01-10 10:47:01] -rw-r--r--. 2 boincer umatlas    592622 Jan 10 09:19 input.tar.gz
[2026-01-10 10:47:01] -rw-------. 1 boincer umatlas  43771926 Jan 10 10:46 HITS.pool.root.1
[2026-01-10 10:47:01] -rw-------. 1 boincer umatlas   1955840 Jan 10 10:47 result.tar.gz
10:47:02 (184772): run_atlas exited; CPU time 10854.153614
10:47:02 (184772): called boinc_finish(0)

</stderr_txt>
]]>

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