Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:44:13 (2852796): wrapper (7.7.26015): starting
09:44:13 (2852796): wrapper: running run_atlas (--nthreads 11)
[2026-01-10 09:44:13] Arguments: --nthreads 11
[2026-01-10 09:44:13] Threads: 11
[2026-01-10 09:44:13] Checking for CVMFS
[2026-01-10 09:44:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 09:44:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 09:44:14] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 09:44:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 09:44:15] 2.13.3.0 12388 94939 228988 154982 2 368 23804568 32935936 16605 16776704 0 416310103 99.472 554523698 38093 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 09:44:15] CVMFS is ok
[2026-01-10 09:44:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 09:44:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 09:44:15] Further information can be found at the LHC@home message board.
[2026-01-10 09:44:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 09:44:15] Checking for apptainer binary...
[2026-01-10 09:44:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 09:44:15] Running /usr/bin/apptainer --version
[2026-01-10 09:44:15] apptainer version 1.4.5-2.el9
[2026-01-10 09:44:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 09:44:15] c7-4-31.aglt2.org
[2026-01-10 09:44:15] apptainer works
[2026-01-10 09:44:15] Set ATHENA_PROC_NUMBER=11
[2026-01-10 09:44:15] Set ATHENA_CORE_NUMBER=11
[2026-01-10 09:44:15] Starting ATLAS job with PandaID=6965384008
[2026-01-10 09:44:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 10:35:58]  *** The last 200 lines of the pilot log: ***
[2026-01-10 10:35:58]  mtime=0
[2026-01-10 10:35:58]  protocol_id=None
[2026-01-10 10:35:58]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-10 10:35:58]  replicas=None
[2026-01-10 10:35:58]  scope=mc16_13TeV
[2026-01-10 10:35:58]  status=None
[2026-01-10 10:35:58]  status_code=0
[2026-01-10 10:35:58]  storage_token=
[2026-01-10 10:35:58]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6965384008/log.47962010._002149.job.log.tgz.1
[2026-01-10 10:35:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/74/38/log.47962010._002149.job.log.tgz.1
[2026-01-10 10:35:58]  workdir=None
[2026-01-10 10:35:58] ]
[2026-01-10 10:35:58] 2026-01-10 15:35:16,072 | INFO     | transferring file log.47962010._002149.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6965384008/log.47962010._002149.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-10 10:35:58] 2026-01-10 15:35:16,073 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6965384008/log.47962010._002149.job.log.tgz.1 /tmp/boinchome/slots/1/log.47962010._002149.job
[2026-01-10 10:35:58] 2026-01-10 15:35:16,090 | INFO     | adding to output.list: log.47962010._002149.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/74/38/log.47962010._002149.job.log.tgz.
[2026-01-10 10:35:58] 2026-01-10 15:35:16,091 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 10:35:58] 2026-01-10 15:35:16,091 | INFO     | summary of transferred files:
[2026-01-10 10:35:58] 2026-01-10 15:35:16,091 | INFO     |  -- lfn=log.47962010._002149.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 10:35:58] 2026-01-10 15:35:16,092 | INFO     | stage-out finished correctly
[2026-01-10 10:35:58] 2026-01-10 15:35:16,191 | WARNING  | process 2863802 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 10:35:58] 2026-01-10 15:35:16,191 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6965384008/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 10:35:58] 2026-01-10 15:35:16,532 | INFO     | number of running child processes to parent process 2863802: 1
[2026-01-10 10:35:58] 2026-01-10 15:35:16,532 | INFO     | maximum number of monitored processes: 16
[2026-01-10 10:35:58] 2026-01-10 15:35:17,102 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 10:35:58] 2026-01-10 15:35:17,284 | INFO     | time since job start (3030s) is within the limit (349056.0s)
[2026-01-10 10:35:58] 2026-01-10 15:35:18,963 | INFO     | job 6965384008 has state=finished
[2026-01-10 10:35:58] 2026-01-10 15:35:18,963 | INFO     | preparing for final server update for job 6965384008 in state='finished'
[2026-01-10 10:35:58] 2026-01-10 15:35:18,964 | INFO     | this job has now completed (state=finished)
[2026-01-10 10:35:58] 2026-01-10 15:35:18,964 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 10:35:58] 2026-01-10 15:35:18,964 | INFO     | log transfer has been attempted: DONE
[2026-01-10 10:35:58] 2026-01-10 15:35:18,965 | INFO     | job 6965384008 has finished - writing final server update
[2026-01-10 10:35:58] 2026-01-10 15:35:18,965 | INFO     | total number of processed events: 50 (read)
[2026-01-10 10:35:58] 2026-01-10 15:35:18,966 | INFO     | executing command: lscpu
[2026-01-10 10:35:58] 2026-01-10 15:35:19,022 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 10:35:58] 2026-01-10 15:35:19,035 | INFO     | monitor loop #221: job 0:6965384008 is in state 'finished'
[2026-01-10 10:35:58] 2026-01-10 15:35:19,036 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:35:58] 2026-01-10 15:35:19,289 | INFO     | time since job start (3032s) is within the limit (349056.0s)
[2026-01-10 10:35:58] 2026-01-10 15:35:21,294 | INFO     | time since job start (3034s) is within the limit (349056.0s)
[2026-01-10 10:35:58] 2026-01-10 15:35:21,538 | INFO     | monitor loop #222: job 0:6965384008 is in state 'finished'
[2026-01-10 10:35:58] 2026-01-10 15:35:21,539 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:35:58] 2026-01-10 15:35:22,388 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 10:35:58] 2026-01-10 15:35:22,394 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3233.3946979166662
[2026-01-10 10:35:58] 2026-01-10 15:35:22,408 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6965384008/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 10:35:58] 2026-01-10 15:35:22,409 | INFO     | extracted standard info from prmon json
[2026-01-10 10:35:58] 2026-01-10 15:35:22,409 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 10:35:58] 2026-01-10 15:35:22,409 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 10:35:58] 2026-01-10 15:35:22,411 | INFO     | fitting pss+swap vs Time
[2026-01-10 10:35:58] 2026-01-10 15:35:22,411 | INFO     | sum of square deviations: 22950571.64285715
[2026-01-10 10:35:58] 2026-01-10 15:35:22,411 | INFO     | sum of deviations: 2943367487.5714273
[2026-01-10 10:35:58] 2026-01-10 15:35:22,411 | INFO     | mean x: 1768057910.642857
[2026-01-10 10:35:58] 2026-01-10 15:35:22,411 | INFO     | mean y: 2890641.5714285714
[2026-01-10 10:35:58] 2026-01-10 15:35:22,411 | INFO     | intersect: -226747198694.40796
[2026-01-10 10:35:58] 2026-01-10 15:35:22,411 | INFO     | chi2: 0.3975218769641183
[2026-01-10 10:35:58] 2026-01-10 15:35:22,412 | INFO     | current memory leak: 128.25 B/s (using 42 data points, chi2=0.40)
[2026-01-10 10:35:58] 2026-01-10 15:35:22,412 | INFO     | could have reported an average CPU frequency of 3218 MHz (5 samples)
[2026-01-10 10:35:58] 2026-01-10 15:35:22,412 | INFO     | ..............................
[2026-01-10 10:35:58] 2026-01-10 15:35:22,412 | INFO     | . Timing measurements:
[2026-01-10 10:35:58] 2026-01-10 15:35:22,412 | INFO     | . get job = 0 s
[2026-01-10 10:35:58] 2026-01-10 15:35:22,412 | INFO     | . initial setup = 3 s
[2026-01-10 10:35:58] 2026-01-10 15:35:22,412 | INFO     | . payload setup = 14 s
[2026-01-10 10:35:58] 2026-01-10 15:35:22,412 | INFO     | . stage-in = 0 s
[2026-01-10 10:35:58] 2026-01-10 15:35:22,412 | INFO     | . payload execution = 2973 s
[2026-01-10 10:35:58] 2026-01-10 15:35:22,412 | INFO     | . stage-out = 0 s
[2026-01-10 10:35:58] 2026-01-10 15:35:22,412 | INFO     | . log creation = 0 s
[2026-01-10 10:35:58] 2026-01-10 15:35:22,413 | INFO     | ..............................
[2026-01-10 10:35:58] 2026-01-10 15:35:22,484 | INFO     | 
[2026-01-10 10:35:58] 2026-01-10 15:35:22,485 | INFO     | job summary report
[2026-01-10 10:35:58] 2026-01-10 15:35:22,485 | INFO     | --------------------------------------------------
[2026-01-10 10:35:58] 2026-01-10 15:35:22,485 | INFO     | PanDA job id: 6965384008
[2026-01-10 10:35:58] 2026-01-10 15:35:22,485 | INFO     | task id: 47962010
[2026-01-10 10:35:58] 2026-01-10 15:35:22,485 | INFO     | errors: (none)
[2026-01-10 10:35:58] 2026-01-10 15:35:22,485 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 10:35:58] 2026-01-10 15:35:22,485 | INFO     | pilot state: finished 
[2026-01-10 10:35:58] 2026-01-10 15:35:22,485 | INFO     | transexitcode: 0
[2026-01-10 10:35:58] 2026-01-10 15:35:22,485 | INFO     | exeerrorcode: 0
[2026-01-10 10:35:58] 2026-01-10 15:35:22,485 | INFO     | exeerrordiag: 
[2026-01-10 10:35:58] 2026-01-10 15:35:22,485 | INFO     | exitcode: 0
[2026-01-10 10:35:58] 2026-01-10 15:35:22,485 | INFO     | exitmsg: OK
[2026-01-10 10:35:58] 2026-01-10 15:35:22,485 | INFO     | cpuconsumptiontime: 11938 s
[2026-01-10 10:35:58] 2026-01-10 15:35:22,485 | INFO     | nevents: 50
[2026-01-10 10:35:58] 2026-01-10 15:35:22,485 | INFO     | neventsw: 0
[2026-01-10 10:35:58] 2026-01-10 15:35:22,485 | INFO     | pid: 2863802
[2026-01-10 10:35:58] 2026-01-10 15:35:22,485 | INFO     | pgrp: 2863802
[2026-01-10 10:35:58] 2026-01-10 15:35:22,485 | INFO     | corecount: 11
[2026-01-10 10:35:58] 2026-01-10 15:35:22,486 | INFO     | event service: False
[2026-01-10 10:35:58] 2026-01-10 15:35:22,486 | INFO     | sizes: {0: 2284569, 11: 2284569, 14: 2284859, 22: 2284887, 2992: 2311020, 2994: 2320014, 2995: 2320198, 3000: 2320476}
[2026-01-10 10:35:58] 2026-01-10 15:35:22,486 | INFO     | --------------------------------------------------
[2026-01-10 10:35:58] 2026-01-10 15:35:22,486 | INFO     | 
[2026-01-10 10:35:58] 2026-01-10 15:35:22,486 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-10 10:35:58] 2026-01-10 15:35:22,504 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 10:35:58] 2026-01-10 15:35:22,504 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 10:35:58] 2026-01-10 15:35:22,504 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 10:35:58] 2026-01-10 15:35:22,504 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 10:35:58] 2026-01-10 15:35:22,504 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 10:35:58] 2026-01-10 15:35:22,504 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 10:35:58] 2026-01-10 15:35:22,505 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 10:35:58] 2026-01-10 15:35:22,505 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 10:35:58] 2026-01-10 15:35:22,505 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 10:35:58] 2026-01-10 15:35:22,505 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 10:35:58] 2026-01-10 15:35:22,505 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 10:35:58] 2026-01-10 15:35:22,505 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 10:35:58] 2026-01-10 15:35:22,505 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 10:35:58] 2026-01-10 15:35:22,505 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 10:35:58] 2026-01-10 15:35:22,505 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 10:35:58] 2026-01-10 15:35:22,505 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 10:35:58] 2026-01-10 15:35:22,505 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 10:35:58] 2026-01-10 15:35:22,505 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 10:35:58] 2026-01-10 15:35:22,505 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 10:35:58] 2026-01-10 15:35:22,505 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 10:35:58] 2026-01-10 15:35:22,505 | INFO     | job 6965384008 has completed (purged errors)
[2026-01-10 10:35:58] 2026-01-10 15:35:22,505 | INFO     | overall cleanup function is called
[2026-01-10 10:35:58] 2026-01-10 15:35:23,520 | INFO     | --- collectZombieJob: --- 10, [2863802]
[2026-01-10 10:35:58] 2026-01-10 15:35:23,521 | INFO     | zombie collector waiting for pid 2863802
[2026-01-10 10:35:58] 2026-01-10 15:35:23,521 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 10:35:58] 2026-01-10 15:35:23,521 | INFO     | collected zombie processes
[2026-01-10 10:35:58] 2026-01-10 15:35:23,521 | INFO     | will attempt to kill all subprocesses of pid=2863802
[2026-01-10 10:35:58] 2026-01-10 15:35:23,833 | INFO     | process IDs to be killed: [2863802] (in reverse order)
[2026-01-10 10:35:58] 2026-01-10 15:35:23,932 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 10:35:58] 2026-01-10 15:35:23,932 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 10:35:58] 2026-01-10 15:35:23,945 | INFO     | did not find any defunct processes belonging to 2863802
[2026-01-10 10:35:58] 2026-01-10 15:35:23,956 | INFO     | did not find any defunct processes belonging to 2863802
[2026-01-10 10:35:58] 2026-01-10 15:35:23,956 | INFO     | ready for new job
[2026-01-10 10:35:58] 2026-01-10 15:35:23,956 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 10:35:58] 2026-01-10 15:35:23,957 | INFO     | ***************************************
[2026-01-10 10:35:58] 2026-01-10 15:35:23,958 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 10:35:58] 2026-01-10 15:35:23,958 | INFO     | ***************************************
[2026-01-10 10:35:58] 2026-01-10 15:35:23,958 | INFO     | 
[2026-01-10 10:35:58] 2026-01-10 15:35:23,962 | INFO     | architecture information:
[2026-01-10 10:35:58] 2026-01-10 15:35:23,962 | INFO     | executing command: cat /etc/os-release
[2026-01-10 10:35:58] 2026-01-10 15:35:23,976 | INFO     | cat /etc/os-release:
[2026-01-10 10:35:58] NAME="CentOS Linux"
[2026-01-10 10:35:58] VERSION="7 (Core)"
[2026-01-10 10:35:58] ID="centos"
[2026-01-10 10:35:58] ID_LIKE="rhel fedora"
[2026-01-10 10:35:58] VERSION_ID="7"
[2026-01-10 10:35:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 10:35:58] ANSI_COLOR="0;31"
[2026-01-10 10:35:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 10:35:58] HOME_URL="https://www.centos.org/"
[2026-01-10 10:35:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 10:35:58] 
[2026-01-10 10:35:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 10:35:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 10:35:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 10:35:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 10:35:58] 
[2026-01-10 10:35:58] 2026-01-10 15:35:23,976 | INFO     | ***************************************
[2026-01-10 10:35:58] 2026-01-10 15:35:24,479 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-10 10:35:58] 2026-01-10 15:35:24,494 | INFO     | sufficient remaining disk space (76379324416 B)
[2026-01-10 10:35:58] 2026-01-10 15:35:24,495 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 10:35:58] 2026-01-10 15:35:24,495 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 10:35:58] 2026-01-10 15:35:24,495 | INFO     | update_server=False
[2026-01-10 10:35:58] 2026-01-10 15:35:24,495 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 10:35:58] 2026-01-10 15:35:24,495 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 10:35:58] 2026-01-10 15:35:25,040 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 10:35:58] 2026-01-10 15:35:25,040 | INFO     | aborting loop
[2026-01-10 10:35:58] 2026-01-10 15:35:25,044 | INFO     | all data control threads have been joined
[2026-01-10 10:35:58] 2026-01-10 15:35:25,500 | INFO     | [job] retrieve thread has finished
[2026-01-10 10:35:58] 2026-01-10 15:35:25,672 | INFO     | all job control threads have been joined
[2026-01-10 10:35:58] 2026-01-10 15:35:25,754 | INFO     | all payload control threads have been joined
[2026-01-10 10:35:58] 2026-01-10 15:35:25,983 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 10:35:58] 2026-01-10 15:35:26,045 | INFO     | [job] job monitor thread has finished
[2026-01-10 10:35:58] 2026-01-10 15:35:26,050 | INFO     | [data] control thread has finished
[2026-01-10 10:35:58] 2026-01-10 15:35:26,142 | INFO     | [job] validate thread has finished
[2026-01-10 10:35:58] 2026-01-10 15:35:26,152 | INFO     | [payload] validate_post thread has finished
[2026-01-10 10:35:58] 2026-01-10 15:35:26,225 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 10:35:58] 2026-01-10 15:35:26,234 | INFO     | [payload] failed_post thread has finished
[2026-01-10 10:35:58] 2026-01-10 15:35:26,498 | INFO     | [data] copytool_out thread has finished
[2026-01-10 10:35:58] 2026-01-10 15:35:26,608 | INFO     | [data] copytool_in thread has finished
[2026-01-10 10:35:58] 2026-01-10 15:35:26,672 | INFO     | [job] control thread has finished
[2026-01-10 10:35:58] 2026-01-10 15:35:26,760 | INFO     | [payload] control thread has finished
[2026-01-10 10:35:58] 2026-01-10 15:35:26,845 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 10:35:58] 2026-01-10 15:35:26,911 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 10:35:58] 2026-01-10 15:35:27,494 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 10:35:58] 2026-01-10 15:35:27,685 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 10:35:58] 2026-01-10 15:35:28,499 | INFO     | [job] queue monitor thread has finished
[2026-01-10 10:35:58] 2026-01-10 15:35:31,687 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 10:35:58] 2026-01-10 15:35:52,326 | INFO     | [monitor] cgroup control has ended
[2026-01-10 10:35:58] 2026-01-10 15:35:52,833 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140707930629952)>', '<ExcThread(monitor, started 140707582945024)>']
[2026-01-10 10:35:58] 2026-01-10 15:35:54,812 | INFO     | PID=2856518 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 10:35:58] 2026-01-10 15:35:54,812 | INFO     | .. there are 13 such processes running
[2026-01-10 10:35:58] 2026-01-10 15:35:54,813 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 10:35:58] 2026-01-10 15:35:54,813 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 10:35:58] 2026-01-10 15:35:54,813 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 10:35:58] 2026-01-10 15:35:54,813 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 10:35:58] 2026-01-10 15:35:54,813 | INFO     | [monitor] control thread has ended
[2026-01-10 10:35:58] 2026-01-10 15:35:57,858 | INFO     | all workflow threads have been joined
[2026-01-10 10:35:58] 2026-01-10 15:35:57,858 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 10:35:58] 2026-01-10 15:35:57,858 | INFO     | traces error code: 0
[2026-01-10 10:35:58] 2026-01-10 15:35:57,859 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 10:35:58] 2026-01-10 15:35:57,958 [wrapper] ==== pilot stdout END ====
[2026-01-10 10:35:58] 2026-01-10 15:35:57,961 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 10:35:58] 2026-01-10 15:35:57,968 [wrapper] pilotpid: 2856518
[2026-01-10 10:35:58] 2026-01-10 15:35:57,970 [wrapper] Pilot exit status: 0
[2026-01-10 10:35:58] 2026-01-10 15:35:57,980 [wrapper] pandaids: 6965384008
[2026-01-10 10:35:58] 2026-01-10 15:35:58,065 [wrapper] cleanup supervisor_pilot 2949360 2856519
[2026-01-10 10:35:58] 2026-01-10 15:35:58,067 [wrapper] Test setup, not cleaning
[2026-01-10 10:35:58] 2026-01-10 15:35:58,070 [wrapper] apfmon messages muted
[2026-01-10 10:35:58] 2026-01-10 15:35:58,072 [wrapper] ==== wrapper stdout END ====
[2026-01-10 10:35:58] 2026-01-10 15:35:58,075 [wrapper] ==== wrapper stderr END ====
[2026-01-10 10:35:58]  *** Error codes and diagnostics ***
[2026-01-10 10:35:58]     "exeErrorCode": 0,
[2026-01-10 10:35:58]     "exeErrorDiag": "",
[2026-01-10 10:35:58]     "pilotErrorCode": 0,
[2026-01-10 10:35:58]     "pilotErrorDiag": "",
[2026-01-10 10:35:58]  *** Listing of results directory ***
[2026-01-10 10:35:58] total 439644
[2026-01-10 10:35:58] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:14 pilot3.tar.gz
[2026-01-10 10:35:58] -rwx------. 1 boincer umatlas     36322 Jan 10 08:14 runpilot2-wrapper.sh
[2026-01-10 10:35:58] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:15 queuedata.json
[2026-01-10 10:35:58] -rw-r--r--. 1 boincer umatlas       100 Jan 10 09:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 10:35:58] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 09:44 run_atlas
[2026-01-10 10:35:58] -rw-r--r--. 1 boincer umatlas       105 Jan 10 09:44 job.xml
[2026-01-10 10:35:58] -rw-r--r--. 2 boincer umatlas 393042859 Jan 10 09:44 EVNT.47962006._000069.pool.root.1
[2026-01-10 10:35:58] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 09:44 start_atlas.sh
[2026-01-10 10:35:58] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 09:44 shared
[2026-01-10 10:35:58] -rw-r--r--. 2 boincer umatlas    592616 Jan 10 09:44 input.tar.gz
[2026-01-10 10:35:58] -rw-r--r--. 1 boincer umatlas         0 Jan 10 09:44 boinc_lockfile
[2026-01-10 10:35:58] -rw-r--r--. 1 boincer umatlas      2890 Jan 10 09:44 pandaJob.out
[2026-01-10 10:35:58] -rw-------. 1 boincer umatlas        57 Jan 10 09:44 setup.sh.local
[2026-01-10 10:35:58] -rw-------. 1 boincer umatlas    989556 Jan 10 09:44 agis_schedconf.cvmfs.json
[2026-01-10 10:35:58] -rw-------. 1 boincer umatlas   1516240 Jan 10 09:44 agis_ddmendpoints.agis.ALL.json
[2026-01-10 10:35:58] drwx------. 5 boincer umatlas      4096 Jan 10 09:44 pilot3
[2026-01-10 10:35:58] -rw-r--r--. 1 boincer umatlas       530 Jan 10 10:30 boinc_task_state.xml
[2026-01-10 10:35:58] -rw-r--r--. 1 boincer umatlas      6943 Jan 10 10:31 init_data.xml
[2026-01-10 10:35:58] -rw-------. 1 boincer umatlas  49342625 Jan 10 10:35 HITS.47962010._002149.pool.root.1
[2026-01-10 10:35:58] -rw-------. 1 boincer umatlas      1024 Jan 10 10:35 memory_monitor_summary.json
[2026-01-10 10:35:58] -rw-------. 1 boincer umatlas   1481508 Jan 10 10:35 log.47962010._002149.job.log.tgz.1
[2026-01-10 10:35:58] -rw-------. 1 boincer umatlas      8528 Jan 10 10:35 heartbeat.json
[2026-01-10 10:35:58] -rw-------. 1 boincer umatlas        95 Jan 10 10:35 pilot_heartbeat.json
[2026-01-10 10:35:58] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 10:35 boinc_mmap_file
[2026-01-10 10:35:58] -rw-r--r--. 1 boincer umatlas        27 Jan 10 10:35 wrapper_checkpoint.txt
[2026-01-10 10:35:58] -rw-------. 1 boincer umatlas      4824 Jan 10 10:35 pilotlog.txt
[2026-01-10 10:35:58] -rw-------. 1 boincer umatlas    463297 Jan 10 10:35 log.47962010._002149.job.log.1
[2026-01-10 10:35:58] -rw-------. 1 boincer umatlas       353 Jan 10 10:35 output.list
[2026-01-10 10:35:58] -rw-r--r--. 1 boincer umatlas       620 Jan 10 10:35 runtime_log
[2026-01-10 10:35:58] -rw-------. 1 boincer umatlas   1966080 Jan 10 10:35 result.tar.gz
[2026-01-10 10:35:58] -rw-------. 1 boincer umatlas       652 Jan 10 10:35 TxBODmRyny8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPpmKDmwHehNm.diag
[2026-01-10 10:35:58] -rw-r--r--. 1 boincer umatlas      9339 Jan 10 10:35 runtime_log.err
[2026-01-10 10:35:58] -rw-r--r--. 1 boincer umatlas     21864 Jan 10 10:35 stderr.txt
[2026-01-10 10:35:58] HITS file was successfully produced:
[2026-01-10 10:35:58] -rw-------. 1 boincer umatlas 49342625 Jan 10 10:35 shared/HITS.pool.root.1
[2026-01-10 10:35:58]  *** Contents of shared directory: ***
[2026-01-10 10:35:58] total 434540
[2026-01-10 10:35:58] -rw-r--r--. 2 boincer umatlas 393042859 Jan 10 09:44 ATLAS.root_0
[2026-01-10 10:35:58] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 09:44 start_atlas.sh
[2026-01-10 10:35:58] -rw-r--r--. 2 boincer umatlas    592616 Jan 10 09:44 input.tar.gz
[2026-01-10 10:35:58] -rw-------. 1 boincer umatlas  49342625 Jan 10 10:35 HITS.pool.root.1
[2026-01-10 10:35:58] -rw-------. 1 boincer umatlas   1966080 Jan 10 10:35 result.tar.gz
10:35:59 (2852796): run_atlas exited; CPU time 11878.624822
10:35:59 (2852796): called boinc_finish(0)

</stderr_txt>
]]>

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