Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:41:29 (2323891): wrapper (7.7.26015): starting
17:41:29 (2323891): wrapper: running run_atlas (--nthreads 12)
[2026-01-11 17:41:29] Arguments: --nthreads 12
[2026-01-11 17:41:29] Threads: 12
[2026-01-11 17:41:29] Checking for CVMFS
[2026-01-11 17:41:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 17:41:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 17:41:29] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 17:41:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 17:41:29] 2.13.3.0 36987 6006 106272 155023 2 131 35867172 46080000 1043 130560 0 9927500 99.995 225071 24845 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2026-01-11 17:41:29] CVMFS is ok
[2026-01-11 17:41:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 17:41:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 17:41:29] Further information can be found at the LHC@home message board.
[2026-01-11 17:41:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 17:41:29] Checking for apptainer binary...
[2026-01-11 17:41:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 17:41:29] Running /usr/bin/apptainer --version
[2026-01-11 17:41:29] apptainer version 1.4.5-2.el9
[2026-01-11 17:41:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 17:41:30] minis01.farm.particle.cz
[2026-01-11 17:41:30] apptainer works
[2026-01-11 17:41:30] Set ATHENA_PROC_NUMBER=12
[2026-01-11 17:41:30] Set ATHENA_CORE_NUMBER=12
[2026-01-11 17:41:30] Starting ATLAS job with PandaID=6965384030
[2026-01-11 17:41:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 18:03:45]  *** The last 200 lines of the pilot log: ***
[2026-01-11 18:03:45]  is_altstaged=None
[2026-01-11 18:03:45]  is_tar=False
[2026-01-11 18:03:45]  lfn=log.47962010._002171.job.log.tgz.1
[2026-01-11 18:03:45]  mtime=0
[2026-01-11 18:03:45]  protocol_id=None
[2026-01-11 18:03:45]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-11 18:03:45]  replicas=None
[2026-01-11 18:03:45]  scope=mc16_13TeV
[2026-01-11 18:03:45]  status=None
[2026-01-11 18:03:45]  status_code=0
[2026-01-11 18:03:45]  storage_token=
[2026-01-11 18:03:45]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6965384030/log.47962010._002171.job.log.tgz.1
[2026-01-11 18:03:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/50/70/log.47962010._002171.job.log.tgz.1
[2026-01-11 18:03:45]  workdir=None
[2026-01-11 18:03:45] ]
[2026-01-11 18:03:45] 2026-01-11 17:02:54,311 | INFO     | transferring file log.47962010._002171.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6965384030/log.47962010._002171.job.log.tgz.1 to /var/lib/boinc/slots/
[2026-01-11 18:03:45] 2026-01-11 17:02:54,311 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6965384030/log.47962010._002171.job.log.tgz.1 /var/lib/boinc/slots/0/log.47962010._002171.job
[2026-01-11 18:03:45] 2026-01-11 17:02:54,328 | INFO     | adding to output.list: log.47962010._002171.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/50/70/log.47962010._002171.job.log.tgz.
[2026-01-11 18:03:45] 2026-01-11 17:02:54,329 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-11 18:03:45] 2026-01-11 17:02:54,329 | INFO     | summary of transferred files:
[2026-01-11 18:03:45] 2026-01-11 17:02:54,329 | INFO     |  -- lfn=log.47962010._002171.job.log.tgz.1, status_code=0, status=transferred
[2026-01-11 18:03:45] 2026-01-11 17:02:54,329 | INFO     | stage-out finished correctly
[2026-01-11 18:03:45] 2026-01-11 17:02:55,208 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-11 18:03:45] 2026-01-11 17:02:55,276 | INFO     | job 6965384030 has state=finished
[2026-01-11 18:03:45] 2026-01-11 17:02:55,276 | INFO     | preparing for final server update for job 6965384030 in state='finished'
[2026-01-11 18:03:45] 2026-01-11 17:02:55,681 | INFO     | time since job start (1277s) is within the limit (349056.0s)
[2026-01-11 18:03:45] 2026-01-11 17:02:55,765 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-11 18:03:45] 2026-01-11 17:02:55,765 | INFO     | this job has now completed (state=finished)
[2026-01-11 18:03:45] 2026-01-11 17:02:55,765 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-11 18:03:45] 2026-01-11 17:02:55,765 | INFO     | log transfer has been attempted: DONE
[2026-01-11 18:03:45] 2026-01-11 17:02:55,766 | INFO     | job 6965384030 has finished - writing final server update
[2026-01-11 18:03:45] 2026-01-11 17:02:55,766 | INFO     | total number of processed events: 50 (read)
[2026-01-11 18:03:45] 2026-01-11 17:02:55,767 | INFO     | executing command: lscpu
[2026-01-11 18:03:45] 2026-01-11 17:02:55,776 | INFO     | monitor loop #100: job 0:6965384030 is in state 'finished'
[2026-01-11 18:03:45] 2026-01-11 17:02:55,777 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 18:03:45] 2026-01-11 17:02:55,799 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 18:03:45] 2026-01-11 17:02:57,687 | INFO     | time since job start (1279s) is within the limit (349056.0s)
[2026-01-11 18:03:45] 2026-01-11 17:02:58,279 | INFO     | monitor loop #101: job 0:6965384030 is in state 'finished'
[2026-01-11 18:03:45] 2026-01-11 17:02:58,279 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 18:03:45] 2026-01-11 17:02:59,399 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-11 18:03:45] 2026-01-11 17:02:59,406 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 2746.53715625
[2026-01-11 18:03:45] 2026-01-11 17:02:59,412 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6965384030/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 18:03:45] 2026-01-11 17:02:59,413 | INFO     | extracted standard info from prmon json
[2026-01-11 18:03:45] 2026-01-11 17:02:59,413 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 18:03:45] 2026-01-11 17:02:59,413 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 18:03:45] 2026-01-11 17:02:59,414 | INFO     | fitting pss+swap vs Time
[2026-01-11 18:03:45] 2026-01-11 17:02:59,415 | INFO     | sum of square deviations: 844029.7142857143
[2026-01-11 18:03:45] 2026-01-11 17:02:59,415 | INFO     | sum of deviations: -181559884.85714284
[2026-01-11 18:03:45] 2026-01-11 17:02:59,415 | INFO     | mean x: 1768150425.142857
[2026-01-11 18:03:45] 2026-01-11 17:02:59,415 | INFO     | mean y: 3063622.4285714286
[2026-01-11 18:03:45] 2026-01-11 17:02:59,415 | INFO     | intersect: 380351269574.7778
[2026-01-11 18:03:45] 2026-01-11 17:02:59,415 | INFO     | chi2: 0.12507640971089515
[2026-01-11 18:03:45] 2026-01-11 17:02:59,415 | INFO     | current memory leak: -215.11 B/s (using 14 data points, chi2=0.13)
[2026-01-11 18:03:45] 2026-01-11 17:02:59,416 | INFO     | could have reported an average CPU frequency of 2756 MHz (4 samples)
[2026-01-11 18:03:45] 2026-01-11 17:02:59,416 | INFO     | ..............................
[2026-01-11 18:03:45] 2026-01-11 17:02:59,416 | INFO     | . Timing measurements:
[2026-01-11 18:03:45] 2026-01-11 17:02:59,417 | INFO     | . get job = 0 s
[2026-01-11 18:03:45] 2026-01-11 17:02:59,417 | INFO     | . initial setup = 1 s
[2026-01-11 18:03:45] 2026-01-11 17:02:59,417 | INFO     | . payload setup = 5 s
[2026-01-11 18:03:45] 2026-01-11 17:02:59,417 | INFO     | . stage-in = 0 s
[2026-01-11 18:03:45] 2026-01-11 17:02:59,417 | INFO     | . payload execution = 1251 s
[2026-01-11 18:03:45] 2026-01-11 17:02:59,417 | INFO     | . stage-out = 0 s
[2026-01-11 18:03:45] 2026-01-11 17:02:59,417 | INFO     | . log creation = 0 s
[2026-01-11 18:03:45] 2026-01-11 17:02:59,417 | INFO     | ..............................
[2026-01-11 18:03:45] 2026-01-11 17:02:59,493 | INFO     | 
[2026-01-11 18:03:45] 2026-01-11 17:02:59,494 | INFO     | job summary report
[2026-01-11 18:03:45] 2026-01-11 17:02:59,494 | INFO     | --------------------------------------------------
[2026-01-11 18:03:45] 2026-01-11 17:02:59,494 | INFO     | PanDA job id: 6965384030
[2026-01-11 18:03:45] 2026-01-11 17:02:59,494 | INFO     | task id: 47962010
[2026-01-11 18:03:45] 2026-01-11 17:02:59,494 | INFO     | errors: (none)
[2026-01-11 18:03:45] 2026-01-11 17:02:59,494 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 18:03:45] 2026-01-11 17:02:59,494 | INFO     | pilot state: finished 
[2026-01-11 18:03:45] 2026-01-11 17:02:59,494 | INFO     | transexitcode: 0
[2026-01-11 18:03:45] 2026-01-11 17:02:59,495 | INFO     | exeerrorcode: 0
[2026-01-11 18:03:45] 2026-01-11 17:02:59,495 | INFO     | exeerrordiag: 
[2026-01-11 18:03:45] 2026-01-11 17:02:59,495 | INFO     | exitcode: 0
[2026-01-11 18:03:45] 2026-01-11 17:02:59,495 | INFO     | exitmsg: OK
[2026-01-11 18:03:45] 2026-01-11 17:02:59,495 | INFO     | cpuconsumptiontime: 11084 s
[2026-01-11 18:03:45] 2026-01-11 17:02:59,495 | INFO     | nevents: 50
[2026-01-11 18:03:45] 2026-01-11 17:02:59,495 | INFO     | neventsw: 0
[2026-01-11 18:03:45] 2026-01-11 17:02:59,495 | INFO     | pid: 2334500
[2026-01-11 18:03:45] 2026-01-11 17:02:59,495 | INFO     | pgrp: 2334500
[2026-01-11 18:03:45] 2026-01-11 17:02:59,496 | INFO     | corecount: 12
[2026-01-11 18:03:45] 2026-01-11 17:02:59,496 | INFO     | event service: False
[2026-01-11 18:03:45] 2026-01-11 17:02:59,496 | INFO     | sizes: {0: 2284398, 1: 2284597, 5: 2284859, 11: 2284915, 1259: 2310225, 1260: 2310224, 1261: 2319402, 1262: 2319458, 1266: 2319704}
[2026-01-11 18:03:45] 2026-01-11 17:02:59,496 | INFO     | --------------------------------------------------
[2026-01-11 18:03:45] 2026-01-11 17:02:59,496 | INFO     | 
[2026-01-11 18:03:45] 2026-01-11 17:02:59,496 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2026-01-11 18:03:45] 2026-01-11 17:02:59,514 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 18:03:45] 2026-01-11 17:02:59,514 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 18:03:45] 2026-01-11 17:02:59,515 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 18:03:45] 2026-01-11 17:02:59,515 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 18:03:45] 2026-01-11 17:02:59,515 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 18:03:45] 2026-01-11 17:02:59,515 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 18:03:45] 2026-01-11 17:02:59,515 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 18:03:45] 2026-01-11 17:02:59,515 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 18:03:45] 2026-01-11 17:02:59,515 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 18:03:45] 2026-01-11 17:02:59,515 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 18:03:45] 2026-01-11 17:02:59,516 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 18:03:45] 2026-01-11 17:02:59,516 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 18:03:45] 2026-01-11 17:02:59,516 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 18:03:45] 2026-01-11 17:02:59,516 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 18:03:45] 2026-01-11 17:02:59,516 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 18:03:45] 2026-01-11 17:02:59,516 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 18:03:45] 2026-01-11 17:02:59,516 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 18:03:45] 2026-01-11 17:02:59,516 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 18:03:45] 2026-01-11 17:02:59,516 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 18:03:45] 2026-01-11 17:02:59,517 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 18:03:45] 2026-01-11 17:02:59,517 | INFO     | job 6965384030 has completed (purged errors)
[2026-01-11 18:03:45] 2026-01-11 17:02:59,517 | INFO     | overall cleanup function is called
[2026-01-11 18:03:45] 2026-01-11 17:03:00,537 | INFO     | --- collectZombieJob: --- 10, [2334500]
[2026-01-11 18:03:45] 2026-01-11 17:03:00,538 | INFO     | zombie collector waiting for pid 2334500
[2026-01-11 18:03:45] 2026-01-11 17:03:00,538 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 18:03:45] 2026-01-11 17:03:00,538 | INFO     | collected zombie processes
[2026-01-11 18:03:45] 2026-01-11 17:03:00,538 | INFO     | will attempt to kill all subprocesses of pid=2334500
[2026-01-11 18:03:45] 2026-01-11 17:03:00,676 | INFO     | process IDs to be killed: [2334500] (in reverse order)
[2026-01-11 18:03:45] 2026-01-11 17:03:00,727 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 18:03:45] 2026-01-11 17:03:00,727 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 18:03:45] 2026-01-11 17:03:00,734 | INFO     | did not find any defunct processes belonging to 2334500
[2026-01-11 18:03:45] 2026-01-11 17:03:00,739 | INFO     | did not find any defunct processes belonging to 2334500
[2026-01-11 18:03:45] 2026-01-11 17:03:00,739 | INFO     | ready for new job
[2026-01-11 18:03:45] 2026-01-11 17:03:00,739 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 18:03:45] 2026-01-11 17:03:00,740 | INFO     | ***************************************
[2026-01-11 18:03:45] 2026-01-11 17:03:00,740 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 18:03:45] 2026-01-11 17:03:00,740 | INFO     | ***************************************
[2026-01-11 18:03:45] 2026-01-11 17:03:00,740 | INFO     | 
[2026-01-11 18:03:45] 2026-01-11 17:03:00,742 | INFO     | architecture information:
[2026-01-11 18:03:45] 2026-01-11 17:03:00,742 | INFO     | executing command: cat /etc/os-release
[2026-01-11 18:03:45] 2026-01-11 17:03:00,756 | INFO     | cat /etc/os-release:
[2026-01-11 18:03:45] NAME="CentOS Linux"
[2026-01-11 18:03:45] VERSION="7 (Core)"
[2026-01-11 18:03:45] ID="centos"
[2026-01-11 18:03:45] ID_LIKE="rhel fedora"
[2026-01-11 18:03:45] VERSION_ID="7"
[2026-01-11 18:03:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 18:03:45] ANSI_COLOR="0;31"
[2026-01-11 18:03:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 18:03:45] HOME_URL="https://www.centos.org/"
[2026-01-11 18:03:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 18:03:45] 
[2026-01-11 18:03:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 18:03:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 18:03:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 18:03:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 18:03:45] 
[2026-01-11 18:03:45] 2026-01-11 17:03:00,757 | INFO     | ***************************************
[2026-01-11 18:03:45] 2026-01-11 17:03:01,259 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2026-01-11 18:03:45] 2026-01-11 17:03:01,274 | INFO     | sufficient remaining disk space (73716989952 B)
[2026-01-11 18:03:45] 2026-01-11 17:03:01,274 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 18:03:45] 2026-01-11 17:03:01,275 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 18:03:45] 2026-01-11 17:03:01,275 | INFO     | update_server=False
[2026-01-11 18:03:45] 2026-01-11 17:03:01,275 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 18:03:45] 2026-01-11 17:03:01,275 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 18:03:45] 2026-01-11 17:03:01,281 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 18:03:45] 2026-01-11 17:03:01,441 | INFO     | all payload control threads have been joined
[2026-01-11 18:03:45] 2026-01-11 17:03:01,787 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 18:03:45] 2026-01-11 17:03:01,788 | INFO     | aborting loop
[2026-01-11 18:03:45] 2026-01-11 17:03:01,827 | INFO     | all data control threads have been joined
[2026-01-11 18:03:45] 2026-01-11 17:03:02,160 | INFO     | all job control threads have been joined
[2026-01-11 18:03:45] 2026-01-11 17:03:02,280 | INFO     | [job] retrieve thread has finished
[2026-01-11 18:03:45] 2026-01-11 17:03:02,281 | INFO     | [job] queue monitor thread has finished
[2026-01-11 18:03:45] 2026-01-11 17:03:02,394 | INFO     | [payload] validate_post thread has finished
[2026-01-11 18:03:45] 2026-01-11 17:03:02,408 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 18:03:45] 2026-01-11 17:03:02,447 | INFO     | [payload] control thread has finished
[2026-01-11 18:03:45] 2026-01-11 17:03:02,793 | INFO     | [job] job monitor thread has finished
[2026-01-11 18:03:45] 2026-01-11 17:03:02,825 | INFO     | [data] copytool_in thread has finished
[2026-01-11 18:03:45] 2026-01-11 17:03:02,832 | INFO     | [data] control thread has finished
[2026-01-11 18:03:45] 2026-01-11 17:03:03,042 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 18:03:45] 2026-01-11 17:03:03,165 | INFO     | [job] control thread has finished
[2026-01-11 18:03:45] 2026-01-11 17:03:03,223 | INFO     | [job] validate thread has finished
[2026-01-11 18:03:45] 2026-01-11 17:03:03,375 | INFO     | [payload] failed_post thread has finished
[2026-01-11 18:03:45] 2026-01-11 17:03:03,392 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 18:03:45] 2026-01-11 17:03:03,582 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 18:03:45] 2026-01-11 17:03:04,414 | INFO     | [data] copytool_out thread has finished
[2026-01-11 18:03:45] 2026-01-11 17:03:05,286 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 18:03:45] 2026-01-11 17:03:11,563 | INFO     | job.realtimelogging is not enabled
[2026-01-11 18:03:45] 2026-01-11 17:03:12,568 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 18:03:45] 2026-01-11 17:03:30,938 | INFO     | PID=2327779 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 18:03:45] 2026-01-11 17:03:30,938 | INFO     | .. there are 2 such processes running
[2026-01-11 18:03:45] 2026-01-11 17:03:30,938 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 18:03:45] 2026-01-11 17:03:30,939 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 18:03:45] 2026-01-11 17:03:30,939 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 18:03:45] 2026-01-11 17:03:40,261 | INFO     | [monitor] cgroup control has ended
[2026-01-11 18:03:45] 2026-01-11 17:03:40,331 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140542375188288)>', '<ExcThread(monitor, started 140541832443648)>']
[2026-01-11 18:03:45] 2026-01-11 17:03:40,988 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 18:03:45] 2026-01-11 17:03:40,989 | INFO     | [monitor] control thread has ended
[2026-01-11 18:03:45] 2026-01-11 17:03:45,337 | INFO     | all workflow threads have been joined
[2026-01-11 18:03:45] 2026-01-11 17:03:45,337 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 18:03:45] 2026-01-11 17:03:45,338 | INFO     | traces error code: 0
[2026-01-11 18:03:45] 2026-01-11 17:03:45,338 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 18:03:45] 2026-01-11 17:03:45,442 [wrapper] ==== pilot stdout END ====
[2026-01-11 18:03:45] 2026-01-11 17:03:45,445 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 18:03:45] 2026-01-11 17:03:45,448 [wrapper] pilotpid: 2327779
[2026-01-11 18:03:45] 2026-01-11 17:03:45,450 [wrapper] Pilot exit status: 0
[2026-01-11 18:03:45] 2026-01-11 17:03:45,460 [wrapper] pandaids: 6965384030
[2026-01-11 18:03:45] 2026-01-11 17:03:45,494 [wrapper] cleanup supervisor_pilot 2367502 2327780
[2026-01-11 18:03:45] 2026-01-11 17:03:45,497 [wrapper] Test setup, not cleaning
[2026-01-11 18:03:45] 2026-01-11 17:03:45,499 [wrapper] apfmon messages muted
[2026-01-11 18:03:45] 2026-01-11 17:03:45,502 [wrapper] ==== wrapper stdout END ====
[2026-01-11 18:03:45] 2026-01-11 17:03:45,504 [wrapper] ==== wrapper stderr END ====
[2026-01-11 18:03:45]  *** Error codes and diagnostics ***
[2026-01-11 18:03:45]     "exeErrorCode": 0,
[2026-01-11 18:03:45]     "exeErrorDiag": "",
[2026-01-11 18:03:45]     "pilotErrorCode": 0,
[2026-01-11 18:03:45]     "pilotErrorDiag": "",
[2026-01-11 18:03:45]  *** Listing of results directory ***
[2026-01-11 18:03:45] total 432888
[2026-01-11 18:03:45] -rw-r--r--. 1 boinc boinc    579449 Jan 10 14:14 pilot3.tar.gz
[2026-01-11 18:03:45] -rwx------. 1 boinc boinc     36322 Jan 10 14:14 runpilot2-wrapper.sh
[2026-01-11 18:03:45] -rw-r--r--. 1 boinc boinc      5112 Jan 10 14:15 queuedata.json
[2026-01-11 18:03:45] -rw-r--r--. 1 boinc boinc       100 Jan 11 17:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 18:03:45] -rwxr-xr-x. 1 boinc boinc      7986 Jan 11 17:41 run_atlas
[2026-01-11 18:03:45] -rw-r--r--. 1 boinc boinc       105 Jan 11 17:41 job.xml
[2026-01-11 18:03:45] -rw-r--r--. 1 boinc boinc      6523 Jan 11 17:41 init_data.xml
[2026-01-11 18:03:45] -rw-r--r--. 2 boinc boinc 392755774 Jan 11 17:41 EVNT.47962006._000073.pool.root.1
[2026-01-11 18:03:45] -rw-r--r--. 2 boinc boinc     15847 Jan 11 17:41 start_atlas.sh
[2026-01-11 18:03:45] drwxrwx--x. 2 boinc boinc      4096 Jan 11 17:41 shared
[2026-01-11 18:03:45] -rw-r--r--. 2 boinc boinc    592618 Jan 11 17:41 input.tar.gz
[2026-01-11 18:03:45] -rw-r--r--. 1 boinc boinc         0 Jan 11 17:41 boinc_lockfile
[2026-01-11 18:03:45] -rw-r--r--. 1 boinc boinc      2890 Jan 11 17:41 pandaJob.out
[2026-01-11 18:03:45] -rw-------. 1 boinc boinc    989556 Jan 11 17:41 agis_schedconf.cvmfs.json
[2026-01-11 18:03:45] -rw-------. 1 boinc boinc   1516240 Jan 11 17:41 agis_ddmendpoints.agis.ALL.json
[2026-01-11 18:03:45] drwx------. 5 boinc boinc      4096 Jan 11 17:41 pilot3
[2026-01-11 18:03:45] -rw-r--r--. 1 boinc boinc       527 Jan 11 17:57 boinc_task_state.xml
[2026-01-11 18:03:45] -rw-------. 1 boinc boinc  42999232 Jan 11 18:02 HITS.47962010._002171.pool.root.1
[2026-01-11 18:03:45] -rw-------. 1 boinc boinc      1013 Jan 11 18:02 memory_monitor_summary.json
[2026-01-11 18:03:45] -rw-------. 1 boinc boinc   1568368 Jan 11 18:02 log.47962010._002171.job.log.tgz.1
[2026-01-11 18:03:45] -rw-------. 1 boinc boinc        95 Jan 11 18:02 pilot_heartbeat.json
[2026-01-11 18:03:45] -rw-------. 1 boinc boinc      8543 Jan 11 18:02 heartbeat.json
[2026-01-11 18:03:45] -rw-r--r--. 1 boinc boinc      8192 Jan 11 18:03 boinc_mmap_file
[2026-01-11 18:03:45] -rw-r--r--. 1 boinc boinc        26 Jan 11 18:03 wrapper_checkpoint.txt
[2026-01-11 18:03:45] -rw-------. 1 boinc boinc      4895 Jan 11 18:03 pilotlog.txt
[2026-01-11 18:03:45] -rw-------. 1 boinc boinc    235772 Jan 11 18:03 log.47962010._002171.job.log.1
[2026-01-11 18:03:45] -rw-------. 1 boinc boinc       353 Jan 11 18:03 output.list
[2026-01-11 18:03:45] -rw-r--r--. 1 boinc boinc       620 Jan 11 18:03 runtime_log
[2026-01-11 18:03:45] -rw-------. 1 boinc boinc   1822720 Jan 11 18:03 result.tar.gz
[2026-01-11 18:03:45] -rw-r--r--. 1 boinc boinc      8864 Jan 11 18:03 runtime_log.err
[2026-01-11 18:03:45] -rw-------. 1 boinc boinc       659 Jan 11 18:03 bvLODmRyny8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYpmKDmcG1OHn.diag
[2026-01-11 18:03:45] -rw-r--r--. 1 boinc boinc     21587 Jan 11 18:03 stderr.txt
[2026-01-11 18:03:45] HITS file was successfully produced:
[2026-01-11 18:03:45] -rw-------. 1 boinc boinc 42999232 Jan 11 18:02 shared/HITS.pool.root.1
[2026-01-11 18:03:45]  *** Contents of shared directory: ***
[2026-01-11 18:03:45] total 427928
[2026-01-11 18:03:45] -rw-r--r--. 2 boinc boinc 392755774 Jan 11 17:41 ATLAS.root_0
[2026-01-11 18:03:45] -rw-r--r--. 2 boinc boinc     15847 Jan 11 17:41 start_atlas.sh
[2026-01-11 18:03:45] -rw-r--r--. 2 boinc boinc    592618 Jan 11 17:41 input.tar.gz
[2026-01-11 18:03:45] -rw-------. 1 boinc boinc  42999232 Jan 11 18:02 HITS.pool.root.1
[2026-01-11 18:03:45] -rw-------. 1 boinc boinc   1822720 Jan 11 18:03 result.tar.gz
18:03:47 (2323891): run_atlas exited; CPU time 11022.395369
18:03:47 (2323891): called boinc_finish(0)

</stderr_txt>
]]>

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