Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:22:06 (21486): wrapper (7.7.26015): starting
08:22:06 (21486): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 08:22:06] Arguments: --nthreads 8
[2026-01-10 08:22:06] Threads: 8
[2026-01-10 08:22:06] Checking for CVMFS
[2026-01-10 08:22:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 08:22:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 08:22:07] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 08:22:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 08:22:07] 2.11.2.0 14221 182521 140052 154981 2 17 10465241 18432001 157 130560 0 123085272 99.980 7011048 32190 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 08:22:07] CVMFS is ok
[2026-01-10 08:22:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 08:22:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 08:22:07] Further information can be found at the LHC@home message board.
[2026-01-10 08:22:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 08:22:07] Checking for apptainer binary...
[2026-01-10 08:22:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 08:22:07] Running /usr/bin/apptainer --version
[2026-01-10 08:22:07] apptainer version 1.3.2-1.el7
[2026-01-10 08:22:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 08:22:07] c-206-9.aglt2.org
[2026-01-10 08:22:07] apptainer works
[2026-01-10 08:22:07] Set ATHENA_PROC_NUMBER=8
[2026-01-10 08:22:07] Set ATHENA_CORE_NUMBER=8
[2026-01-10 08:22:07] Starting ATLAS job with PandaID=6965384003
[2026-01-10 08:22:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 09:34:46]  *** The last 200 lines of the pilot log: ***
[2026-01-10 09:34:46]  lfn=log.47962010._002144.job.log.tgz.1
[2026-01-10 09:34:46]  mtime=0
[2026-01-10 09:34:46]  protocol_id=None
[2026-01-10 09:34:46]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-10 09:34:46]  replicas=None
[2026-01-10 09:34:46]  scope=mc16_13TeV
[2026-01-10 09:34:46]  status=None
[2026-01-10 09:34:46]  status_code=0
[2026-01-10 09:34:46]  storage_token=
[2026-01-10 09:34:46]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6965384003/log.47962010._002144.job.log.tgz.1
[2026-01-10 09:34:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/25/de/log.47962010._002144.job.log.tgz.1
[2026-01-10 09:34:46]  workdir=None
[2026-01-10 09:34:46] ]
[2026-01-10 09:34:46] 2026-01-10 14:34:09,685 | INFO     | transferring file log.47962010._002144.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6965384003/log.47962010._002144.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-10 09:34:46] 2026-01-10 14:34:09,685 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6965384003/log.47962010._002144.job.log.tgz.1 /tmp/boinchome/slots/2/log.47962010._002144.job
[2026-01-10 09:34:46] 2026-01-10 14:34:09,702 | INFO     | adding to output.list: log.47962010._002144.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/25/de/log.47962010._002144.job.log.tgz.
[2026-01-10 09:34:46] 2026-01-10 14:34:09,702 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 09:34:46] 2026-01-10 14:34:09,703 | INFO     | summary of transferred files:
[2026-01-10 09:34:46] 2026-01-10 14:34:09,703 | INFO     |  -- lfn=log.47962010._002144.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 09:34:46] 2026-01-10 14:34:09,703 | INFO     | stage-out finished correctly
[2026-01-10 09:34:46] 2026-01-10 14:34:09,909 | INFO     | PID=29691 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 09:34:46] 2026-01-10 14:34:09,909 | INFO     | .. there are 3 such processes running
[2026-01-10 09:34:46] 2026-01-10 14:34:10,315 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 09:34:46] 2026-01-10 14:34:10,878 | INFO     | job 6965384003 has state=finished
[2026-01-10 09:34:46] 2026-01-10 14:34:10,878 | INFO     | preparing for final server update for job 6965384003 in state='finished'
[2026-01-10 09:34:46] 2026-01-10 14:34:10,878 | INFO     | this job has now completed (state=finished)
[2026-01-10 09:34:46] 2026-01-10 14:34:10,879 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 09:34:46] 2026-01-10 14:34:10,879 | INFO     | log transfer has been attempted: DONE
[2026-01-10 09:34:46] 2026-01-10 14:34:10,879 | INFO     | job 6965384003 has finished - writing final server update
[2026-01-10 09:34:46] 2026-01-10 14:34:10,879 | INFO     | total number of processed events: 50 (read)
[2026-01-10 09:34:46] 2026-01-10 14:34:10,880 | INFO     | executing command: lscpu
[2026-01-10 09:34:46] 2026-01-10 14:34:10,899 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 09:34:46] 2026-01-10 14:34:10,910 | INFO     | time since job start (4310s) is within the limit (349056.0s)
[2026-01-10 09:34:46] 2026-01-10 14:34:12,915 | INFO     | time since job start (4312s) is within the limit (349056.0s)
[2026-01-10 09:34:46] 2026-01-10 14:34:14,590 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-10 09:34:46] 2026-01-10 14:34:14,593 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 1817.875
[2026-01-10 09:34:46] 2026-01-10 14:34:14,596 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6965384003/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 09:34:46] 2026-01-10 14:34:14,596 | INFO     | extracted standard info from prmon json
[2026-01-10 09:34:46] 2026-01-10 14:34:14,597 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 09:34:46] 2026-01-10 14:34:14,597 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 09:34:46] 2026-01-10 14:34:14,598 | INFO     | fitting pss+swap vs Time
[2026-01-10 09:34:46] 2026-01-10 14:34:14,598 | INFO     | sum of square deviations: 81270804.0
[2026-01-10 09:34:46] 2026-01-10 14:34:14,599 | INFO     | sum of deviations: 3524146844.0
[2026-01-10 09:34:46] 2026-01-10 14:34:14,599 | INFO     | mean x: 1768053593.0
[2026-01-10 09:34:46] 2026-01-10 14:34:14,599 | INFO     | mean y: 2538324.046875
[2026-01-10 09:34:46] 2026-01-10 14:34:14,599 | INFO     | intersect: -76665590734.86844
[2026-01-10 09:34:46] 2026-01-10 14:34:14,599 | INFO     | chi2: 0.1795801116349778
[2026-01-10 09:34:46] 2026-01-10 14:34:14,599 | INFO     | current memory leak: 43.36 B/s (using 64 data points, chi2=0.18)
[2026-01-10 09:34:46] 2026-01-10 14:34:14,600 | INFO     | could have reported an average CPU frequency of 2075 MHz (6 samples)
[2026-01-10 09:34:46] 2026-01-10 14:34:14,600 | INFO     | ..............................
[2026-01-10 09:34:46] 2026-01-10 14:34:14,600 | INFO     | . Timing measurements:
[2026-01-10 09:34:46] 2026-01-10 14:34:14,600 | INFO     | . get job = 0 s
[2026-01-10 09:34:46] 2026-01-10 14:34:14,600 | INFO     | . initial setup = 2 s
[2026-01-10 09:34:46] 2026-01-10 14:34:14,600 | INFO     | . payload setup = 5 s
[2026-01-10 09:34:46] 2026-01-10 14:34:14,600 | INFO     | . stage-in = 0 s
[2026-01-10 09:34:46] 2026-01-10 14:34:14,600 | INFO     | . payload execution = 4284 s
[2026-01-10 09:34:46] 2026-01-10 14:34:14,600 | INFO     | . stage-out = 0 s
[2026-01-10 09:34:46] 2026-01-10 14:34:14,601 | INFO     | . log creation = 0 s
[2026-01-10 09:34:46] 2026-01-10 14:34:14,601 | INFO     | ..............................
[2026-01-10 09:34:46] 2026-01-10 14:34:14,860 | INFO     | 
[2026-01-10 09:34:46] 2026-01-10 14:34:14,860 | INFO     | job summary report
[2026-01-10 09:34:46] 2026-01-10 14:34:14,860 | INFO     | --------------------------------------------------
[2026-01-10 09:34:46] 2026-01-10 14:34:14,860 | INFO     | PanDA job id: 6965384003
[2026-01-10 09:34:46] 2026-01-10 14:34:14,861 | INFO     | task id: 47962010
[2026-01-10 09:34:46] 2026-01-10 14:34:14,861 | INFO     | errors: (none)
[2026-01-10 09:34:46] 2026-01-10 14:34:14,861 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 09:34:46] 2026-01-10 14:34:14,861 | INFO     | pilot state: finished 
[2026-01-10 09:34:46] 2026-01-10 14:34:14,861 | INFO     | transexitcode: 0
[2026-01-10 09:34:46] 2026-01-10 14:34:14,861 | INFO     | exeerrorcode: 0
[2026-01-10 09:34:46] 2026-01-10 14:34:14,861 | INFO     | exeerrordiag: 
[2026-01-10 09:34:46] 2026-01-10 14:34:14,861 | INFO     | exitcode: 0
[2026-01-10 09:34:46] 2026-01-10 14:34:14,861 | INFO     | exitmsg: OK
[2026-01-10 09:34:46] 2026-01-10 14:34:14,861 | INFO     | cpuconsumptiontime: 30965 s
[2026-01-10 09:34:46] 2026-01-10 14:34:14,862 | INFO     | nevents: 50
[2026-01-10 09:34:46] 2026-01-10 14:34:14,862 | INFO     | neventsw: 0
[2026-01-10 09:34:46] 2026-01-10 14:34:14,862 | INFO     | pid: 25519
[2026-01-10 09:34:46] 2026-01-10 14:34:14,862 | INFO     | pgrp: 25519
[2026-01-10 09:34:46] 2026-01-10 14:34:14,862 | INFO     | corecount: 8
[2026-01-10 09:34:46] 2026-01-10 14:34:14,862 | INFO     | event service: False
[2026-01-10 09:34:46] 2026-01-10 14:34:14,862 | INFO     | sizes: {0: 2284569, 5: 2284831, 11: 2284887, 4293: 2311746, 4294: 2320796, 4299: 2320986}
[2026-01-10 09:34:46] 2026-01-10 14:34:14,862 | INFO     | --------------------------------------------------
[2026-01-10 09:34:46] 2026-01-10 14:34:14,862 | INFO     | 
[2026-01-10 09:34:46] 2026-01-10 14:34:14,862 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-10 09:34:46] 2026-01-10 14:34:14,878 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 09:34:46] 2026-01-10 14:34:14,878 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 09:34:46] 2026-01-10 14:34:14,878 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 09:34:46] 2026-01-10 14:34:14,879 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 09:34:46] 2026-01-10 14:34:14,879 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 09:34:46] 2026-01-10 14:34:14,879 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 09:34:46] 2026-01-10 14:34:14,879 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 09:34:46] 2026-01-10 14:34:14,879 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 09:34:46] 2026-01-10 14:34:14,879 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 09:34:46] 2026-01-10 14:34:14,879 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 09:34:46] 2026-01-10 14:34:14,879 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 09:34:46] 2026-01-10 14:34:14,879 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 09:34:46] 2026-01-10 14:34:14,880 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 09:34:46] 2026-01-10 14:34:14,880 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 09:34:46] 2026-01-10 14:34:14,880 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 09:34:46] 2026-01-10 14:34:14,880 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 09:34:46] 2026-01-10 14:34:14,880 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 09:34:46] 2026-01-10 14:34:14,880 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 09:34:46] 2026-01-10 14:34:14,880 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 09:34:46] 2026-01-10 14:34:14,880 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 09:34:46] 2026-01-10 14:34:14,880 | INFO     | job 6965384003 has completed (purged errors)
[2026-01-10 09:34:46] 2026-01-10 14:34:14,881 | INFO     | overall cleanup function is called
[2026-01-10 09:34:46] 2026-01-10 14:34:15,179 | WARNING  | process 25519 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 09:34:46] 2026-01-10 14:34:15,261 | INFO     | using path: /tmp/boinchome/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 09:34:46] 2026-01-10 14:34:15,365 | INFO     | number of running child processes to parent process 25519: 1
[2026-01-10 09:34:46] 2026-01-10 14:34:15,366 | INFO     | maximum number of monitored processes: 16
[2026-01-10 09:34:46] 2026-01-10 14:34:15,366 | INFO     | aborting job monitoring since job object (job id=6965384003) has expired
[2026-01-10 09:34:46] 2026-01-10 14:34:15,892 | INFO     | --- collectZombieJob: --- 10, [25519]
[2026-01-10 09:34:46] 2026-01-10 14:34:15,892 | INFO     | zombie collector waiting for pid 25519
[2026-01-10 09:34:46] 2026-01-10 14:34:15,892 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 09:34:46] 2026-01-10 14:34:15,893 | INFO     | collected zombie processes
[2026-01-10 09:34:46] 2026-01-10 14:34:15,893 | INFO     | will attempt to kill all subprocesses of pid=25519
[2026-01-10 09:34:46] 2026-01-10 14:34:15,994 | INFO     | process IDs to be killed: [25519] (in reverse order)
[2026-01-10 09:34:46] 2026-01-10 14:34:16,037 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 09:34:46] 2026-01-10 14:34:16,038 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 09:34:46] 2026-01-10 14:34:16,040 | INFO     | did not find any defunct processes belonging to 25519
[2026-01-10 09:34:46] 2026-01-10 14:34:16,043 | INFO     | did not find any defunct processes belonging to 25519
[2026-01-10 09:34:46] 2026-01-10 14:34:16,043 | INFO     | ready for new job
[2026-01-10 09:34:46] 2026-01-10 14:34:16,043 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 09:34:46] 2026-01-10 14:34:16,044 | INFO     | ***************************************
[2026-01-10 09:34:46] 2026-01-10 14:34:16,044 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 09:34:46] 2026-01-10 14:34:16,044 | INFO     | ***************************************
[2026-01-10 09:34:46] 2026-01-10 14:34:16,045 | INFO     | 
[2026-01-10 09:34:46] 2026-01-10 14:34:16,045 | INFO     | architecture information:
[2026-01-10 09:34:46] 2026-01-10 14:34:16,046 | INFO     | executing command: cat /etc/os-release
[2026-01-10 09:34:46] 2026-01-10 14:34:16,058 | INFO     | cat /etc/os-release:
[2026-01-10 09:34:46] NAME="CentOS Linux"
[2026-01-10 09:34:46] VERSION="7 (Core)"
[2026-01-10 09:34:46] ID="centos"
[2026-01-10 09:34:46] ID_LIKE="rhel fedora"
[2026-01-10 09:34:46] VERSION_ID="7"
[2026-01-10 09:34:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 09:34:46] ANSI_COLOR="0;31"
[2026-01-10 09:34:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 09:34:46] HOME_URL="https://www.centos.org/"
[2026-01-10 09:34:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 09:34:46] 
[2026-01-10 09:34:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 09:34:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 09:34:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 09:34:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 09:34:46] 
[2026-01-10 09:34:46] 2026-01-10 14:34:16,058 | INFO     | ***************************************
[2026-01-10 09:34:46] 2026-01-10 14:34:16,561 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-10 09:34:46] 2026-01-10 14:34:16,574 | INFO     | sufficient remaining disk space (27577548800 B)
[2026-01-10 09:34:46] 2026-01-10 14:34:16,574 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 09:34:46] 2026-01-10 14:34:16,575 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 09:34:46] 2026-01-10 14:34:16,575 | INFO     | update_server=False
[2026-01-10 09:34:46] 2026-01-10 14:34:16,575 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 09:34:46] 2026-01-10 14:34:16,575 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 09:34:46] 2026-01-10 14:34:16,575 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:34:46] 2026-01-10 14:34:16,575 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:34:46] 2026-01-10 14:34:16,576 | INFO     | aborting loop
[2026-01-10 09:34:46] 2026-01-10 14:34:17,422 | INFO     | all data control threads have been joined
[2026-01-10 09:34:46] 2026-01-10 14:34:17,579 | INFO     | [job] queue monitor thread has finished
[2026-01-10 09:34:46] 2026-01-10 14:34:17,580 | INFO     | [job] retrieve thread has finished
[2026-01-10 09:34:46] 2026-01-10 14:34:17,581 | INFO     | [job] job monitor thread has finished
[2026-01-10 09:34:46] 2026-01-10 14:34:17,631 | INFO     | all payload control threads have been joined
[2026-01-10 09:34:46] 2026-01-10 14:34:17,782 | INFO     | [job] validate thread has finished
[2026-01-10 09:34:46] 2026-01-10 14:34:17,786 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 09:34:46] 2026-01-10 14:34:17,922 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 09:34:46] 2026-01-10 14:34:18,056 | INFO     | [payload] validate_post thread has finished
[2026-01-10 09:34:46] 2026-01-10 14:34:18,189 | INFO     | all job control threads have been joined
[2026-01-10 09:34:46] 2026-01-10 14:34:18,264 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 09:34:46] 2026-01-10 14:34:18,359 | INFO     | [payload] failed_post thread has finished
[2026-01-10 09:34:46] 2026-01-10 14:34:18,427 | INFO     | [data] control thread has finished
[2026-01-10 09:34:46] 2026-01-10 14:34:18,445 | INFO     | [data] copytool_in thread has finished
[2026-01-10 09:34:46] 2026-01-10 14:34:18,636 | INFO     | [payload] control thread has finished
[2026-01-10 09:34:46] 2026-01-10 14:34:18,980 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 09:34:46] 2026-01-10 14:34:19,194 | INFO     | [job] control thread has finished
[2026-01-10 09:34:46] 2026-01-10 14:34:19,792 | INFO     | [data] copytool_out thread has finished
[2026-01-10 09:34:46] 2026-01-10 14:34:20,581 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 09:34:46] 2026-01-10 14:34:26,594 | INFO     | [monitor] cgroup control has ended
[2026-01-10 09:34:46] 2026-01-10 14:34:27,081 | INFO     | job.realtimelogging is not enabled
[2026-01-10 09:34:46] 2026-01-10 14:34:28,086 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 09:34:46] 2026-01-10 14:34:29,032 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139872427194176)>', '<ExcThread(monitor, started 139871691720448)>']
[2026-01-10 09:34:46] 2026-01-10 14:34:34,057 | INFO     | all workflow threads have been joined
[2026-01-10 09:34:46] 2026-01-10 14:34:34,057 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 09:34:46] 2026-01-10 14:34:34,057 | INFO     | traces error code: 0
[2026-01-10 09:34:46] 2026-01-10 14:34:34,057 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 09:34:46] 2026-01-10 14:34:46,112 | INFO     | PID=29691 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 09:34:46] 2026-01-10 14:34:46,112 | INFO     | .. there are 3 such processes running
[2026-01-10 09:34:46] 2026-01-10 14:34:46,113 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 09:34:46] 2026-01-10 14:34:46,113 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 09:34:46] 2026-01-10 14:34:46,113 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 09:34:46] 2026-01-10 14:34:46,113 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 09:34:46] 2026-01-10 14:34:46,113 | INFO     | [monitor] control thread has ended
[2026-01-10 09:34:46] 2026-01-10 14:34:46,201 [wrapper] ==== pilot stdout END ====
[2026-01-10 09:34:46] 2026-01-10 14:34:46,204 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 09:34:46] 2026-01-10 14:34:46,207 [wrapper] pilotpid: 29691
[2026-01-10 09:34:46] 2026-01-10 14:34:46,209 [wrapper] Pilot exit status: 0
[2026-01-10 09:34:46] 2026-01-10 14:34:46,218 [wrapper] pandaids: 6965384003
[2026-01-10 09:34:46] 2026-01-10 14:34:46,243 [wrapper] cleanup supervisor_pilot 24970 29692
[2026-01-10 09:34:46] 2026-01-10 14:34:46,246 [wrapper] Test setup, not cleaning
[2026-01-10 09:34:46] 2026-01-10 14:34:46,248 [wrapper] apfmon messages muted
[2026-01-10 09:34:46] 2026-01-10 14:34:46,250 [wrapper] ==== wrapper stdout END ====
[2026-01-10 09:34:46] 2026-01-10 14:34:46,253 [wrapper] ==== wrapper stderr END ====
[2026-01-10 09:34:46]  *** Error codes and diagnostics ***
[2026-01-10 09:34:46]     "exeErrorCode": 0,
[2026-01-10 09:34:46]     "exeErrorDiag": "",
[2026-01-10 09:34:46]     "pilotErrorCode": 0,
[2026-01-10 09:34:46]     "pilotErrorDiag": "",
[2026-01-10 09:34:46]  *** Listing of results directory ***
[2026-01-10 09:34:46] total 431160
[2026-01-10 09:34:46] -rw-r--r-- 1 boincer umatlas    579449 Jan 10 08:14 pilot3.tar.gz
[2026-01-10 09:34:46] -rwx------ 1 boincer umatlas     36322 Jan 10 08:14 runpilot2-wrapper.sh
[2026-01-10 09:34:46] -rw-r--r-- 1 boincer umatlas      5112 Jan 10 08:15 queuedata.json
[2026-01-10 09:34:46] -rw-r--r-- 1 boincer umatlas       100 Jan 10 08:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 09:34:46] -rwxr-xr-x 1 boincer umatlas      7986 Jan 10 08:22 run_atlas
[2026-01-10 09:34:46] -rw-r--r-- 1 boincer umatlas       105 Jan 10 08:22 job.xml
[2026-01-10 09:34:46] -rw-r--r-- 2 boincer umatlas 391566827 Jan 10 08:22 EVNT.47962006._000064.pool.root.1
[2026-01-10 09:34:46] -rw-r--r-- 2 boincer umatlas     15847 Jan 10 08:22 start_atlas.sh
[2026-01-10 09:34:46] drwxrwx--x 2 boincer umatlas      4096 Jan 10 08:22 shared
[2026-01-10 09:34:46] -rw-r--r-- 2 boincer umatlas    592617 Jan 10 08:22 input.tar.gz
[2026-01-10 09:34:46] -rw-r--r-- 1 boincer umatlas         0 Jan 10 08:22 boinc_lockfile
[2026-01-10 09:34:46] -rw-r--r-- 1 boincer umatlas      2890 Jan 10 08:22 pandaJob.out
[2026-01-10 09:34:46] -rw------- 1 boincer umatlas        57 Jan 10 08:22 setup.sh.local
[2026-01-10 09:34:46] -rw------- 1 boincer umatlas    989556 Jan 10 08:22 agis_schedconf.cvmfs.json
[2026-01-10 09:34:46] -rw------- 1 boincer umatlas   1516240 Jan 10 08:22 agis_ddmendpoints.agis.ALL.json
[2026-01-10 09:34:46] drwx------ 5 boincer umatlas      4096 Jan 10 08:22 pilot3
[2026-01-10 09:34:46] -rw-r--r-- 1 boincer umatlas      5949 Jan 10 09:29 init_data.xml
[2026-01-10 09:34:46] -rw-r--r-- 1 boincer umatlas       529 Jan 10 09:30 boinc_task_state.xml
[2026-01-10 09:34:46] -rw------- 1 boincer umatlas  42307400 Jan 10 09:33 HITS.47962010._002144.pool.root.1
[2026-01-10 09:34:46] -rw------- 1 boincer umatlas      1050 Jan 10 09:34 memory_monitor_summary.json
[2026-01-10 09:34:46] -rw------- 1 boincer umatlas   1213115 Jan 10 09:34 log.47962010._002144.job.log.tgz.1
[2026-01-10 09:34:46] -rw------- 1 boincer umatlas      8610 Jan 10 09:34 heartbeat.json
[2026-01-10 09:34:46] -rw-r--r-- 1 boincer umatlas      8192 Jan 10 09:34 boinc_mmap_file
[2026-01-10 09:34:46] -rw-r--r-- 1 boincer umatlas        27 Jan 10 09:34 wrapper_checkpoint.txt
[2026-01-10 09:34:46] -rw------- 1 boincer umatlas       820 Jan 10 09:34 pilotlog.txt
[2026-01-10 09:34:46] -rw------- 1 boincer umatlas        95 Jan 10 09:34 pilot_heartbeat.json
[2026-01-10 09:34:46] -rw------- 1 boincer umatlas    647141 Jan 10 09:34 log.47962010._002144.job.log.1
[2026-01-10 09:34:46] -rw------- 1 boincer umatlas       353 Jan 10 09:34 output.list
[2026-01-10 09:34:46] -rw-r--r-- 1 boincer umatlas       620 Jan 10 09:34 runtime_log
[2026-01-10 09:34:46] -rw------- 1 boincer umatlas   1884160 Jan 10 09:34 result.tar.gz
[2026-01-10 09:34:46] -rw-r--r-- 1 boincer umatlas      9337 Jan 10 09:34 runtime_log.err
[2026-01-10 09:34:46] -rw------- 1 boincer umatlas       658 Jan 10 09:34 puAODmRyny8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOpmKDmbbUh2m.diag
[2026-01-10 09:34:46] -rw-r--r-- 1 boincer umatlas     21707 Jan 10 09:34 stderr.txt
[2026-01-10 09:34:46] HITS file was successfully produced:
[2026-01-10 09:34:46] -rw------- 1 boincer umatlas 42307400 Jan 10 09:33 shared/HITS.pool.root.1
[2026-01-10 09:34:46]  *** Contents of shared directory: ***
[2026-01-10 09:34:46] total 426144
[2026-01-10 09:34:46] -rw-r--r-- 2 boincer umatlas 391566827 Jan 10 08:22 ATLAS.root_0
[2026-01-10 09:34:46] -rw-r--r-- 2 boincer umatlas     15847 Jan 10 08:22 start_atlas.sh
[2026-01-10 09:34:46] -rw-r--r-- 2 boincer umatlas    592617 Jan 10 08:22 input.tar.gz
[2026-01-10 09:34:46] -rw------- 1 boincer umatlas  42307400 Jan 10 09:33 HITS.pool.root.1
[2026-01-10 09:34:46] -rw------- 1 boincer umatlas   1884160 Jan 10 09:34 result.tar.gz
09:34:48 (21486): run_atlas exited; CPU time 30878.749850
09:34:48 (21486): called boinc_finish(0)

</stderr_txt>
]]>

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