Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:36:09 (3478891): wrapper (7.7.26015): starting
08:36:09 (3478891): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 08:36:09] Arguments: --nthreads 8
[2026-01-10 08:36:09] Threads: 8
[2026-01-10 08:36:09] Checking for CVMFS
[2026-01-10 08:36:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 08:36:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 08:36:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 08:36:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 08:36:10] 2.13.3.0 11820 24384 141384 154981 2 129 31082194 40960000 22940 16776704 0 37876782 99.781 25372324 48651 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 08:36:10] CVMFS is ok
[2026-01-10 08:36:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 08:36:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 08:36:10] Further information can be found at the LHC@home message board.
[2026-01-10 08:36:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 08:36:10] Checking for apptainer binary...
[2026-01-10 08:36:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 08:36:10] Running /usr/bin/apptainer --version
[2026-01-10 08:36:10] apptainer version 1.4.5-2.el9
[2026-01-10 08:36:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 08:36:10] c-212-10.aglt2.org
[2026-01-10 08:36:10] apptainer works
[2026-01-10 08:36:10] Set ATHENA_PROC_NUMBER=8
[2026-01-10 08:36:10] Set ATHENA_CORE_NUMBER=8
[2026-01-10 08:36:10] Starting ATLAS job with PandaID=6965384121
[2026-01-10 08:36:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 11:58:04]  *** The last 200 lines of the pilot log: ***
[2026-01-10 11:58:04] 2026-01-10 16:56:59,630 | INFO     | extracted standard info from prmon json
[2026-01-10 11:58:04] 2026-01-10 16:56:59,630 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 11:58:04] 2026-01-10 16:56:59,630 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 11:58:04] 2026-01-10 16:56:59,633 | INFO     | fitting pss+swap vs Time
[2026-01-10 11:58:04] 2026-01-10 16:56:59,633 | INFO     | sum of square deviations: 2370707823.7258887
[2026-01-10 11:58:04] 2026-01-10 16:56:59,634 | INFO     | sum of deviations: 100956859099.68019
[2026-01-10 11:58:04] 2026-01-10 16:56:59,634 | INFO     | mean x: 1768058220.6954315
[2026-01-10 11:58:04] 2026-01-10 16:56:59,634 | INFO     | mean y: 2401317.6446700506
[2026-01-10 11:58:04] 2026-01-10 16:56:59,634 | INFO     | intersect: -75290556709.65317
[2026-01-10 11:58:04] 2026-01-10 16:56:59,634 | INFO     | chi2: 6.635916843888761
[2026-01-10 11:58:04] 2026-01-10 16:56:59,635 | INFO     | sum of square deviations: 2194783516.244802
[2026-01-10 11:58:04] 2026-01-10 16:56:59,635 | INFO     | sum of deviations: 135489722389.43225
[2026-01-10 11:58:04] 2026-01-10 16:56:59,635 | INFO     | mean x: 1768058068.2135417
[2026-01-10 11:58:04] 2026-01-10 16:56:59,636 | INFO     | mean y: 2431068.5260416665
[2026-01-10 11:58:04] 2026-01-10 16:56:59,636 | INFO     | intersect: -109144414193.24112
[2026-01-10 11:58:04] 2026-01-10 16:56:59,636 | INFO     | chi2: 4.903607044570245
[2026-01-10 11:58:04] 2026-01-10 16:56:59,636 | INFO     | current chi2=4.903607044570245 (change=26.10505586600076 %)
[2026-01-10 11:58:04] 2026-01-10 16:56:59,636 | INFO     | sum of square deviations: 2027789608.6310196
[2026-01-10 11:58:04] 2026-01-10 16:56:59,637 | INFO     | sum of deviations: 143341929662.599
[2026-01-10 11:58:04] 2026-01-10 16:56:59,637 | INFO     | mean x: 1768057915.7326202
[2026-01-10 11:58:04] 2026-01-10 16:56:59,637 | INFO     | mean y: 2438161.4919786095
[2026-01-10 11:58:04] 2026-01-10 16:56:59,637 | INFO     | intersect: -124979380621.6925
[2026-01-10 11:58:04] 2026-01-10 16:56:59,637 | INFO     | chi2: 4.663186493694775
[2026-01-10 11:58:04] 2026-01-10 16:56:59,637 | INFO     | current chi2=4.663186493694775 (change=4.902932651214114 %)
[2026-01-10 11:58:04] 2026-01-10 16:56:59,637 | INFO     | right removable region: 186
[2026-01-10 11:58:04] 2026-01-10 16:56:59,638 | INFO     | sum of square deviations: 2194699946.244802
[2026-01-10 11:58:04] 2026-01-10 16:56:59,638 | INFO     | sum of deviations: 43591619900.95839
[2026-01-10 11:58:04] 2026-01-10 16:56:59,639 | INFO     | mean x: 1768058373.2135417
[2026-01-10 11:58:04] 2026-01-10 16:56:59,639 | INFO     | mean y: 2450980.7083333335
[2026-01-10 11:58:04] 2026-01-10 16:56:59,639 | INFO     | intersect: -35115118826.36482
[2026-01-10 11:58:04] 2026-01-10 16:56:59,639 | INFO     | chi2: 3.3138188265319397
[2026-01-10 11:58:04] 2026-01-10 16:56:59,639 | INFO     | current chi2=3.3138188265319397 (change=50.06238166495791 %)
[2026-01-10 11:58:04] 2026-01-10 16:56:59,639 | INFO     | sum of square deviations: 2027622468.6310196
[2026-01-10 11:58:04] 2026-01-10 16:56:59,640 | INFO     | sum of deviations: 10860918635.711216
[2026-01-10 11:58:04] 2026-01-10 16:56:59,640 | INFO     | mean x: 1768058525.7326202
[2026-01-10 11:58:04] 2026-01-10 16:56:59,640 | INFO     | mean y: 2480829.834224599
[2026-01-10 11:58:04] 2026-01-10 16:56:59,640 | INFO     | intersect: -9468088809.356318
[2026-01-10 11:58:04] 2026-01-10 16:56:59,641 | INFO     | chi2: 2.349126691640747
[2026-01-10 11:58:04] 2026-01-10 16:56:59,641 | INFO     | current chi2=2.349126691640747 (change=29.111191208385595 %)
[2026-01-10 11:58:04] 2026-01-10 16:56:59,641 | INFO     | sum of square deviations: 1869265399.3626416
[2026-01-10 11:58:04] 2026-01-10 16:56:59,642 | INFO     | sum of deviations: -1567271859.736246
[2026-01-10 11:58:04] 2026-01-10 16:56:59,642 | INFO     | mean x: 1768058678.2417583
[2026-01-10 11:58:04] 2026-01-10 16:56:59,642 | INFO     | mean y: 2492640.175824176
[2026-01-10 11:58:04] 2026-01-10 16:56:59,642 | INFO     | intersect: 1484908467.1181085
[2026-01-10 11:58:04] 2026-01-10 16:56:59,642 | INFO     | chi2: 2.0707171728962503
[2026-01-10 11:58:04] 2026-01-10 16:56:59,642 | INFO     | current chi2=2.0707171728962503 (change=11.851617868683 %)
[2026-01-10 11:58:04] 2026-01-10 16:56:59,642 | INFO     | left removable region: 30
[2026-01-10 11:58:04] 2026-01-10 16:56:59,642 | INFO     | sum of square deviations: 1177160271.9743636
[2026-01-10 11:58:04] 2026-01-10 16:56:59,643 | INFO     | sum of deviations: 36858866877.25643
[2026-01-10 11:58:04] 2026-01-10 16:56:59,643 | INFO     | mean x: 1768058800.3205128
[2026-01-10 11:58:04] 2026-01-10 16:56:59,643 | INFO     | mean y: 2546653.794871795
[2026-01-10 11:58:04] 2026-01-10 16:56:59,643 | INFO     | intersect: -55358346423.97861
[2026-01-10 11:58:04] 2026-01-10 16:56:59,643 | INFO     | chi2: 0.09123261678329829
[2026-01-10 11:58:04] 2026-01-10 16:56:59,643 | INFO     | current memory leak: 31.31 B/s (using 156 data points, chi2=0.09)
[2026-01-10 11:58:04] 2026-01-10 16:56:59,644 | INFO     | could have reported an average CPU frequency of 3192 MHz (10 samples)
[2026-01-10 11:58:04] 2026-01-10 16:56:59,644 | INFO     | ..............................
[2026-01-10 11:58:04] 2026-01-10 16:56:59,644 | INFO     | . Timing measurements:
[2026-01-10 11:58:04] 2026-01-10 16:56:59,644 | INFO     | . get job = 0 s
[2026-01-10 11:58:04] 2026-01-10 16:56:59,644 | INFO     | . initial setup = 2 s
[2026-01-10 11:58:04] 2026-01-10 16:56:59,644 | INFO     | . payload setup = 14 s
[2026-01-10 11:58:04] 2026-01-10 16:56:59,644 | INFO     | . stage-in = 0 s
[2026-01-10 11:58:04] 2026-01-10 16:56:59,644 | INFO     | . payload execution = 11977 s
[2026-01-10 11:58:04] 2026-01-10 16:56:59,644 | INFO     | . stage-out = 1 s
[2026-01-10 11:58:04] 2026-01-10 16:56:59,644 | INFO     | . log creation = 0 s
[2026-01-10 11:58:04] 2026-01-10 16:56:59,644 | INFO     | ..............................
[2026-01-10 11:58:04] 2026-01-10 16:56:59,714 | INFO     | 
[2026-01-10 11:58:04] 2026-01-10 16:56:59,714 | INFO     | job summary report
[2026-01-10 11:58:04] 2026-01-10 16:56:59,714 | INFO     | --------------------------------------------------
[2026-01-10 11:58:04] 2026-01-10 16:56:59,714 | INFO     | PanDA job id: 6965384121
[2026-01-10 11:58:04] 2026-01-10 16:56:59,714 | INFO     | task id: 47962010
[2026-01-10 11:58:04] 2026-01-10 16:56:59,715 | INFO     | errors: (none)
[2026-01-10 11:58:04] 2026-01-10 16:56:59,715 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 11:58:04] 2026-01-10 16:56:59,715 | INFO     | pilot state: finished 
[2026-01-10 11:58:04] 2026-01-10 16:56:59,715 | INFO     | transexitcode: 0
[2026-01-10 11:58:04] 2026-01-10 16:56:59,715 | INFO     | exeerrorcode: 0
[2026-01-10 11:58:04] 2026-01-10 16:56:59,715 | INFO     | exeerrordiag: 
[2026-01-10 11:58:04] 2026-01-10 16:56:59,715 | INFO     | exitcode: 0
[2026-01-10 11:58:04] 2026-01-10 16:56:59,715 | INFO     | exitmsg: OK
[2026-01-10 11:58:04] 2026-01-10 16:56:59,715 | INFO     | cpuconsumptiontime: 12692 s
[2026-01-10 11:58:04] 2026-01-10 16:56:59,715 | INFO     | nevents: 50
[2026-01-10 11:58:04] 2026-01-10 16:56:59,715 | INFO     | neventsw: 0
[2026-01-10 11:58:04] 2026-01-10 16:56:59,715 | INFO     | pid: 3489413
[2026-01-10 11:58:04] 2026-01-10 16:56:59,715 | INFO     | pgrp: 3489413
[2026-01-10 11:58:04] 2026-01-10 16:56:59,715 | INFO     | corecount: 8
[2026-01-10 11:58:04] 2026-01-10 16:56:59,715 | INFO     | event service: False
[2026-01-10 11:58:04] 2026-01-10 16:56:59,715 | INFO     | sizes: {0: 2284569, 1: 2284569, 11: 2284887, 11995: 2315067, 11997: 2324061, 11999: 2324117, 12003: 2324491}
[2026-01-10 11:58:04] 2026-01-10 16:56:59,715 | INFO     | --------------------------------------------------
[2026-01-10 11:58:04] 2026-01-10 16:56:59,715 | INFO     | 
[2026-01-10 11:58:04] 2026-01-10 16:56:59,716 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-10 11:58:04] 2026-01-10 16:56:59,733 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 11:58:04] 2026-01-10 16:56:59,734 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 11:58:04] 2026-01-10 16:56:59,734 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 11:58:04] 2026-01-10 16:56:59,734 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 11:58:04] 2026-01-10 16:56:59,734 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 11:58:04] 2026-01-10 16:56:59,734 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 11:58:04] 2026-01-10 16:56:59,734 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 11:58:04] 2026-01-10 16:56:59,734 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 11:58:04] 2026-01-10 16:56:59,734 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 11:58:04] 2026-01-10 16:56:59,734 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 11:58:04] 2026-01-10 16:56:59,734 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 11:58:04] 2026-01-10 16:56:59,734 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 11:58:04] 2026-01-10 16:56:59,734 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 11:58:04] 2026-01-10 16:56:59,734 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 11:58:04] 2026-01-10 16:56:59,735 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 11:58:04] 2026-01-10 16:56:59,735 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 11:58:04] 2026-01-10 16:56:59,735 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 11:58:04] 2026-01-10 16:56:59,735 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 11:58:04] 2026-01-10 16:56:59,735 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 11:58:04] 2026-01-10 16:56:59,735 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 11:58:04] 2026-01-10 16:56:59,735 | INFO     | job 6965384121 has completed (purged errors)
[2026-01-10 11:58:04] 2026-01-10 16:56:59,735 | INFO     | overall cleanup function is called
[2026-01-10 11:58:04] 2026-01-10 16:57:00,749 | INFO     | --- collectZombieJob: --- 10, [3489413]
[2026-01-10 11:58:04] 2026-01-10 16:57:00,749 | INFO     | zombie collector waiting for pid 3489413
[2026-01-10 11:58:04] 2026-01-10 16:57:00,749 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 11:58:04] 2026-01-10 16:57:00,749 | INFO     | collected zombie processes
[2026-01-10 11:58:04] 2026-01-10 16:57:00,749 | INFO     | will attempt to kill all subprocesses of pid=3489413
[2026-01-10 11:58:04] 2026-01-10 16:57:01,052 | INFO     | process IDs to be killed: [3489413] (in reverse order)
[2026-01-10 11:58:04] 2026-01-10 16:57:01,163 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 11:58:04] 2026-01-10 16:57:01,164 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 11:58:04] 2026-01-10 16:57:01,176 | INFO     | did not find any defunct processes belonging to 3489413
[2026-01-10 11:58:04] 2026-01-10 16:57:01,186 | INFO     | did not find any defunct processes belonging to 3489413
[2026-01-10 11:58:04] 2026-01-10 16:57:01,186 | INFO     | ready for new job
[2026-01-10 11:58:04] 2026-01-10 16:57:01,186 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 11:58:04] 2026-01-10 16:57:01,188 | INFO     | ***************************************
[2026-01-10 11:58:04] 2026-01-10 16:57:01,188 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 11:58:04] 2026-01-10 16:57:01,188 | INFO     | ***************************************
[2026-01-10 11:58:04] 2026-01-10 16:57:01,188 | INFO     | 
[2026-01-10 11:58:04] 2026-01-10 16:57:01,193 | INFO     | architecture information:
[2026-01-10 11:58:04] 2026-01-10 16:57:01,193 | INFO     | executing command: cat /etc/os-release
[2026-01-10 11:58:04] 2026-01-10 16:57:01,207 | INFO     | cat /etc/os-release:
[2026-01-10 11:58:04] NAME="CentOS Linux"
[2026-01-10 11:58:04] VERSION="7 (Core)"
[2026-01-10 11:58:04] ID="centos"
[2026-01-10 11:58:04] ID_LIKE="rhel fedora"
[2026-01-10 11:58:04] VERSION_ID="7"
[2026-01-10 11:58:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 11:58:04] ANSI_COLOR="0;31"
[2026-01-10 11:58:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 11:58:04] HOME_URL="https://www.centos.org/"
[2026-01-10 11:58:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 11:58:04] 
[2026-01-10 11:58:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 11:58:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 11:58:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 11:58:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 11:58:04] 
[2026-01-10 11:58:04] 2026-01-10 16:57:01,208 | INFO     | ***************************************
[2026-01-10 11:58:04] 2026-01-10 16:57:01,710 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-10 11:58:04] 2026-01-10 16:57:01,726 | INFO     | sufficient remaining disk space (127287689216 B)
[2026-01-10 11:58:04] 2026-01-10 16:57:01,726 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 11:58:04] 2026-01-10 16:57:01,726 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 11:58:04] 2026-01-10 16:57:01,726 | INFO     | update_server=False
[2026-01-10 11:58:04] 2026-01-10 16:57:01,726 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 11:58:04] 2026-01-10 16:57:01,726 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 11:58:04] 2026-01-10 16:57:01,727 | INFO     | aborting loop
[2026-01-10 11:58:04] 2026-01-10 16:57:01,929 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 11:58:04] 2026-01-10 16:57:02,010 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 11:58:04] 2026-01-10 16:57:02,363 | INFO     | all data control threads have been joined
[2026-01-10 11:58:04] 2026-01-10 16:57:02,731 | INFO     | [job] retrieve thread has finished
[2026-01-10 11:58:04] 2026-01-10 16:57:02,732 | INFO     | [job] job monitor thread has finished
[2026-01-10 11:58:04] 2026-01-10 16:57:03,181 | INFO     | all payload control threads have been joined
[2026-01-10 11:58:04] 2026-01-10 16:57:03,221 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 11:58:04] 2026-01-10 16:57:03,279 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 11:58:04] 2026-01-10 16:57:03,335 | INFO     | all job control threads have been joined
[2026-01-10 11:58:04] 2026-01-10 16:57:03,347 | INFO     | [payload] failed_post thread has finished
[2026-01-10 11:58:04] 2026-01-10 16:57:03,368 | INFO     | [data] control thread has finished
[2026-01-10 11:58:04] 2026-01-10 16:57:03,634 | INFO     | [data] copytool_in thread has finished
[2026-01-10 11:58:04] 2026-01-10 16:57:03,720 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 11:58:04] 2026-01-10 16:57:03,835 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 11:58:04] 2026-01-10 16:57:04,015 | INFO     | [data] copytool_out thread has finished
[2026-01-10 11:58:04] 2026-01-10 16:57:04,068 | INFO     | [payload] validate_post thread has finished
[2026-01-10 11:58:04] 2026-01-10 16:57:04,177 | INFO     | [job] validate thread has finished
[2026-01-10 11:58:04] 2026-01-10 16:57:04,183 | INFO     | [payload] control thread has finished
[2026-01-10 11:58:04] 2026-01-10 16:57:04,340 | INFO     | [job] control thread has finished
[2026-01-10 11:58:04] 2026-01-10 16:57:04,721 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 11:58:04] 2026-01-10 16:57:05,726 | INFO     | [job] queue monitor thread has finished
[2026-01-10 11:58:04] 2026-01-10 16:57:05,930 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 11:58:04] 2026-01-10 16:57:31,571 | INFO     | PID=3482709 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 11:58:04] 2026-01-10 16:57:31,571 | INFO     | .. there are 15 such processes running
[2026-01-10 11:58:04] 2026-01-10 16:57:31,571 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 11:58:04] 2026-01-10 16:57:31,571 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 11:58:04] 2026-01-10 16:57:31,571 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 11:58:04] 2026-01-10 16:57:57,901 | INFO     | [monitor] cgroup control has ended
[2026-01-10 11:58:04] 2026-01-10 16:57:58,998 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139623351674688)>', '<ExcThread(monitor, started 139622994663168)>']
[2026-01-10 11:58:04] 2026-01-10 16:57:59,687 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 11:58:04] 2026-01-10 16:57:59,687 | INFO     | [monitor] control thread has ended
[2026-01-10 11:58:04] 2026-01-10 16:58:04,023 | INFO     | all workflow threads have been joined
[2026-01-10 11:58:04] 2026-01-10 16:58:04,025 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 11:58:04] 2026-01-10 16:58:04,025 | INFO     | traces error code: 0
[2026-01-10 11:58:04] 2026-01-10 16:58:04,025 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 11:58:04] 2026-01-10 16:58:04,114 [wrapper] ==== pilot stdout END ====
[2026-01-10 11:58:04] 2026-01-10 16:58:04,117 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 11:58:04] 2026-01-10 16:58:04,119 [wrapper] pilotpid: 3482709
[2026-01-10 11:58:04] 2026-01-10 16:58:04,120 [wrapper] Pilot exit status: 0
[2026-01-10 11:58:04] 2026-01-10 16:58:04,129 [wrapper] pandaids: 6965384121
[2026-01-10 11:58:04] 2026-01-10 16:58:04,206 [wrapper] cleanup supervisor_pilot 3859201 3482710
[2026-01-10 11:58:04] 2026-01-10 16:58:04,208 [wrapper] Test setup, not cleaning
[2026-01-10 11:58:04] 2026-01-10 16:58:04,211 [wrapper] apfmon messages muted
[2026-01-10 11:58:04] 2026-01-10 16:58:04,215 [wrapper] ==== wrapper stdout END ====
[2026-01-10 11:58:04] 2026-01-10 16:58:04,217 [wrapper] ==== wrapper stderr END ====
[2026-01-10 11:58:04]  *** Error codes and diagnostics ***
[2026-01-10 11:58:04]     "exeErrorCode": 0,
[2026-01-10 11:58:04]     "exeErrorDiag": "",
[2026-01-10 11:58:04]     "pilotErrorCode": 0,
[2026-01-10 11:58:04]     "pilotErrorDiag": "",
[2026-01-10 11:58:04]  *** Listing of results directory ***
[2026-01-10 11:58:04] total 433892
[2026-01-10 11:58:04] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:14 pilot3.tar.gz
[2026-01-10 11:58:04] -rwx------. 1 boincer umatlas     36322 Jan 10 08:14 runpilot2-wrapper.sh
[2026-01-10 11:58:04] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:15 queuedata.json
[2026-01-10 11:58:04] -rw-r--r--. 1 boincer umatlas       100 Jan 10 08:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 11:58:04] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 08:36 run_atlas
[2026-01-10 11:58:04] -rw-r--r--. 1 boincer umatlas       105 Jan 10 08:36 job.xml
[2026-01-10 11:58:04] -rw-r--r--. 2 boincer umatlas 390344352 Jan 10 08:36 EVNT.47962006._000079.pool.root.1
[2026-01-10 11:58:04] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:36 start_atlas.sh
[2026-01-10 11:58:04] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 08:36 shared
[2026-01-10 11:58:04] -rw-r--r--. 2 boincer umatlas    592613 Jan 10 08:36 input.tar.gz
[2026-01-10 11:58:04] -rw-r--r--. 1 boincer umatlas         0 Jan 10 08:36 boinc_lockfile
[2026-01-10 11:58:04] -rw-r--r--. 1 boincer umatlas      2890 Jan 10 08:36 pandaJob.out
[2026-01-10 11:58:04] -rw-------. 1 boincer umatlas        57 Jan 10 08:36 setup.sh.local
[2026-01-10 11:58:04] -rw-------. 1 boincer umatlas    989556 Jan 10 08:36 agis_schedconf.cvmfs.json
[2026-01-10 11:58:04] drwx------. 5 boincer umatlas      4096 Jan 10 08:36 pilot3
[2026-01-10 11:58:04] -rw-r--r--. 1 boincer umatlas       531 Jan 10 11:40 boinc_task_state.xml
[2026-01-10 11:58:04] -rw-r--r--. 1 boincer umatlas      6958 Jan 10 11:56 init_data.xml
[2026-01-10 11:58:04] -rw-------. 1 boincer umatlas  44026422 Jan 10 11:56 HITS.47962010._002262.pool.root.1
[2026-01-10 11:58:04] -rw-------. 1 boincer umatlas      1030 Jan 10 11:56 memory_monitor_summary.json
[2026-01-10 11:58:04] -rw-------. 1 boincer umatlas        95 Jan 10 11:56 pilot_heartbeat.json
[2026-01-10 11:58:04] -rw-------. 1 boincer umatlas   1516240 Jan 10 11:56 agis_ddmendpoints.agis.ALL.json
[2026-01-10 11:58:04] -rw-------. 1 boincer umatlas   1298212 Jan 10 11:56 log.47962010._002262.job.log.tgz.1
[2026-01-10 11:58:04] -rw-------. 1 boincer umatlas      8532 Jan 10 11:56 heartbeat.json
[2026-01-10 11:58:04] -rw-r--r--. 1 boincer umatlas        28 Jan 10 11:58 wrapper_checkpoint.txt
[2026-01-10 11:58:04] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 11:58 boinc_mmap_file
[2026-01-10 11:58:04] -rw-------. 1 boincer umatlas      4825 Jan 10 11:58 pilotlog.txt
[2026-01-10 11:58:04] -rw-------. 1 boincer umatlas   1709328 Jan 10 11:58 log.47962010._002262.job.log.1
[2026-01-10 11:58:04] -rw-------. 1 boincer umatlas       353 Jan 10 11:58 output.list
[2026-01-10 11:58:04] -rw-r--r--. 1 boincer umatlas       620 Jan 10 11:58 runtime_log
[2026-01-10 11:58:04] -rw-------. 1 boincer umatlas   3031040 Jan 10 11:58 result.tar.gz
[2026-01-10 11:58:04] -rw-r--r--. 1 boincer umatlas      9343 Jan 10 11:58 runtime_log.err
[2026-01-10 11:58:04] -rw-------. 1 boincer umatlas       655 Jan 10 11:58 6CqKDmSyny8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9pmKDmBxUJVo.diag
[2026-01-10 11:58:04] -rw-r--r--. 1 boincer umatlas     20994 Jan 10 11:58 stderr.txt
[2026-01-10 11:58:04] HITS file was successfully produced:
[2026-01-10 11:58:04] -rw-------. 1 boincer umatlas 44026422 Jan 10 11:56 shared/HITS.pool.root.1
[2026-01-10 11:58:04]  *** Contents of shared directory: ***
[2026-01-10 11:58:04] total 427752
[2026-01-10 11:58:04] -rw-r--r--. 2 boincer umatlas 390344352 Jan 10 08:36 ATLAS.root_0
[2026-01-10 11:58:04] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:36 start_atlas.sh
[2026-01-10 11:58:04] -rw-r--r--. 2 boincer umatlas    592613 Jan 10 08:36 input.tar.gz
[2026-01-10 11:58:04] -rw-------. 1 boincer umatlas  44026422 Jan 10 11:56 HITS.pool.root.1
[2026-01-10 11:58:04] -rw-------. 1 boincer umatlas   3031040 Jan 10 11:58 result.tar.gz
11:58:05 (3478891): run_atlas exited; CPU time 12726.080070
11:58:05 (3478891): called boinc_finish(0)

</stderr_txt>
]]>

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