Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:41:20 (3855499): wrapper (7.7.26015): starting
16:41:20 (3855499): wrapper: running run_atlas (--nthreads 4)
[2026-01-10 16:41:20] Arguments: --nthreads 4
[2026-01-10 16:41:20] Threads: 4
[2026-01-10 16:41:20] Checking for CVMFS
[2026-01-10 16:41:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 16:41:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 16:41:21] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 16:41:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 16:41:21] 2.9.2.0 2985000 2936 96348 154984 2 129 21510786 36864001 0 130560 0 2198071 99.990 108498 2432 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 16:41:21] CVMFS is ok
[2026-01-10 16:41:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 16:41:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 16:41:21] Further information can be found at the LHC@home message board.
[2026-01-10 16:41:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 16:41:21] Checking for apptainer binary...
[2026-01-10 16:41:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 16:41:21] Running /usr/bin/apptainer --version
[2026-01-10 16:41:21] apptainer version 1.4.1-1.1
[2026-01-10 16:41:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 16:41:21] thA325
[2026-01-10 16:41:21] apptainer works
[2026-01-10 16:41:21] Set ATHENA_PROC_NUMBER=4
[2026-01-10 16:41:21] Set ATHENA_CORE_NUMBER=4
[2026-01-10 16:41:21] Starting ATLAS job with PandaID=6965384243
[2026-01-10 16:41:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 16:45:33]  *** The last 200 lines of the pilot log: ***
[2026-01-10 16:45:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 16:45:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 16:45:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 16:45:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 16:45:33] 
[2026-01-10 16:45:33] 2026-01-10 15:44:55,220 | INFO     | ***************************************
[2026-01-10 16:45:33] 2026-01-10 15:44:55,724 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 16:45:33] 2026-01-10 15:44:55,740 | INFO     | sufficient remaining disk space (239807234048 B)
[2026-01-10 16:45:33] 2026-01-10 15:44:55,740 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 16:45:33] 2026-01-10 15:44:55,740 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 16:45:33] 2026-01-10 15:44:55,740 | INFO     | update_server=False
[2026-01-10 16:45:33] 2026-01-10 15:44:55,740 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 16:45:33] 2026-01-10 15:44:55,741 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 16:45:33] 2026-01-10 15:44:55,741 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 16:45:33] 2026-01-10 15:44:55,741 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 16:45:33] 2026-01-10 15:44:55,741 | INFO     | aborting loop
[2026-01-10 16:45:33] 2026-01-10 15:44:56,191 | INFO     | all job control threads have been joined
[2026-01-10 16:45:33] 2026-01-10 15:44:56,613 | INFO     | all data control threads have been joined
[2026-01-10 16:45:33] 2026-01-10 15:44:56,746 | INFO     | [job] queue monitor thread has finished
[2026-01-10 16:45:33] 2026-01-10 15:44:56,746 | INFO     | [job] retrieve thread has finished
[2026-01-10 16:45:33] 2026-01-10 15:44:56,747 | INFO     | [job] job monitor thread has finished
[2026-01-10 16:45:33] 2026-01-10 15:44:56,805 | INFO     | [data] copytool_in thread has finished
[2026-01-10 16:45:33] 2026-01-10 15:44:56,813 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 16:45:33] 2026-01-10 15:44:56,836 | INFO     | [payload] failed_post thread has finished
[2026-01-10 16:45:33] 2026-01-10 15:44:57,074 | INFO     | [payload] validate_post thread has finished
[2026-01-10 16:45:33] 2026-01-10 15:44:57,196 | INFO     | [job] control thread has finished
[2026-01-10 16:45:33] 2026-01-10 15:44:57,206 | INFO     | all payload control threads have been joined
[2026-01-10 16:45:33] 2026-01-10 15:44:57,619 | INFO     | [data] control thread has finished
[2026-01-10 16:45:33] 2026-01-10 15:44:57,747 | INFO     | [data] copytool_out thread has finished
[2026-01-10 16:45:33] 2026-01-10 15:44:58,040 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 16:45:33] 2026-01-10 15:44:58,143 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 16:45:33] 2026-01-10 15:44:58,160 | INFO     | [job] validate thread has finished
[2026-01-10 16:45:33] 2026-01-10 15:44:58,211 | INFO     | [payload] control thread has finished
[2026-01-10 16:45:33] 2026-01-10 15:44:58,232 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 16:45:33] 2026-01-10 15:44:58,811 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 16:45:33] 2026-01-10 15:45:02,818 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 16:45:33] 2026-01-10 15:45:26,864 | INFO     | PID=3859317 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 16:45:33] 2026-01-10 15:45:26,864 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 16:45:33] 2026-01-10 15:45:26,864 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 16:45:33] 2026-01-10 15:45:26,864 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 16:45:33] 2026-01-10 15:45:27,869 | INFO     | [monitor] cgroup control has ended
[2026-01-10 16:45:33] 2026-01-10 15:45:28,520 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140304495306560)>', '<ExcThread(monitor, started 140304149632768)>']
[2026-01-10 16:45:33] 2026-01-10 15:45:28,874 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 16:45:33] 2026-01-10 15:45:28,874 | INFO     | [monitor] control thread has ended
[2026-01-10 16:45:33] 2026-01-10 15:45:33,546 | INFO     | all workflow threads have been joined
[2026-01-10 16:45:33] 2026-01-10 15:45:33,546 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 16:45:33] 2026-01-10 15:45:33,546 | INFO     | traces error code: 0
[2026-01-10 16:45:33] 2026-01-10 15:45:33,546 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 16:45:33] 2026-01-10 15:45:33,614 [wrapper] ==== pilot stdout END ====
[2026-01-10 16:45:33] 2026-01-10 15:45:33,618 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 16:45:33] 2026-01-10 15:45:33,622 [wrapper] pilotpid: 3859317
[2026-01-10 16:45:33] 2026-01-10 15:45:33,625 [wrapper] Pilot exit status: 0
[2026-01-10 16:45:33] 2026-01-10 15:45:33,635 [wrapper] pandaids: 6965384243
[2026-01-10 16:45:33] 2026-01-10 15:45:33,655 [wrapper] cleanup supervisor_pilot 3859323 3859318
[2026-01-10 16:45:33] 2026-01-10 15:45:33,659 [wrapper] Test setup, not cleaning
[2026-01-10 16:45:33] 2026-01-10 15:45:33,662 [wrapper] apfmon messages muted
[2026-01-10 16:45:33] 2026-01-10 15:45:33,665 [wrapper] ==== wrapper stdout END ====
[2026-01-10 16:45:33] 2026-01-10 15:45:33,669 [wrapper] ==== wrapper stderr END ====
[2026-01-10 16:45:33]  *** Error codes and diagnostics ***
[2026-01-10 16:45:33]     "exeErrorCode": 65,
[2026-01-10 16:45:33]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm: <NONE>; Current Function: unknown\"",
[2026-01-10 16:45:33]     "pilotErrorCode": 1305,
[2026-01-10 16:45:33]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm",
[2026-01-10 16:45:33]  *** Listing of results directory ***
[2026-01-10 16:45:33] total 388856
[2026-01-10 16:45:33] -rw-r--r-- 1 boinc boinc    579449 Jan 10 14:14 pilot3.tar.gz
[2026-01-10 16:45:33] -rwx------ 1 boinc boinc     36322 Jan 10 14:14 runpilot2-wrapper.sh
[2026-01-10 16:45:33] -rw-r--r-- 1 boinc boinc      5112 Jan 10 14:15 queuedata.json
[2026-01-10 16:45:33] -rw-r--r-- 1 boinc boinc       100 Jan 10 16:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 16:45:33] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 16:41 run_atlas
[2026-01-10 16:45:33] -rw-r--r-- 1 boinc boinc       105 Jan 10 16:41 job.xml
[2026-01-10 16:45:33] -rw-r--r-- 2 boinc boinc 393996253 Jan 10 16:41 EVNT.47962006._000098.pool.root.1
[2026-01-10 16:45:33] -rw-r--r-- 2 boinc boinc    592612 Jan 10 16:41 input.tar.gz
[2026-01-10 16:45:33] -rw-r--r-- 2 boinc boinc     15847 Jan 10 16:41 start_atlas.sh
[2026-01-10 16:45:33] drwxrwx--x 2 boinc boinc      4096 Jan 10 16:41 shared
[2026-01-10 16:45:33] -rw-r--r-- 1 boinc boinc         0 Jan 10 16:41 boinc_setup_complete
[2026-01-10 16:45:33] -rw-r--r-- 1 boinc boinc      6369 Jan 10 16:41 init_data.xml
[2026-01-10 16:45:33] -rw-r--r-- 1 boinc boinc         0 Jan 10 16:41 boinc_lockfile
[2026-01-10 16:45:33] -rw-r--r-- 1 boinc boinc      2890 Jan 10 16:41 pandaJob.out
[2026-01-10 16:45:33] -rw------- 1 boinc boinc    989556 Jan 10 16:41 agis_schedconf.cvmfs.json
[2026-01-10 16:45:33] -rw------- 1 boinc boinc   1516240 Jan 10 16:41 agis_ddmendpoints.agis.ALL.json
[2026-01-10 16:45:33] drwx------ 5 boinc boinc      4096 Jan 10 16:41 pilot3
[2026-01-10 16:45:33] -rw-r--r-- 1 boinc boinc       523 Jan 10 16:42 boinc_task_state.xml
[2026-01-10 16:45:33] -rw------- 1 boinc boinc       988 Jan 10 16:42 memory_monitor_summary.json
[2026-01-10 16:45:33] -rw------- 1 boinc boinc     54941 Jan 10 16:42 log.47962010._002384.job.log.tgz.1
[2026-01-10 16:45:33] -rw------- 1 boinc boinc        95 Jan 10 16:44 pilot_heartbeat.json
[2026-01-10 16:45:33] -rw------- 1 boinc boinc      9076 Jan 10 16:44 heartbeat.json
[2026-01-10 16:45:33] -rw-r--r-- 1 boinc boinc      8192 Jan 10 16:45 boinc_mmap_file
[2026-01-10 16:45:33] -rw-r--r-- 1 boinc boinc        23 Jan 10 16:45 wrapper_checkpoint.txt
[2026-01-10 16:45:33] -rw------- 1 boinc boinc      4752 Jan 10 16:45 pilotlog.txt
[2026-01-10 16:45:33] -rw------- 1 boinc boinc     92731 Jan 10 16:45 log.47962010._002384.job.log.1
[2026-01-10 16:45:33] -rw------- 1 boinc boinc       186 Jan 10 16:45 output.list
[2026-01-10 16:45:33] -rw-r--r-- 1 boinc boinc       620 Jan 10 16:45 runtime_log
[2026-01-10 16:45:33] -rw------- 1 boinc boinc    163840 Jan 10 16:45 result.tar.gz
[2026-01-10 16:45:33] -rw-r--r-- 1 boinc boinc      8744 Jan 10 16:45 runtime_log.err
[2026-01-10 16:45:33] -rw------- 1 boinc boinc       649 Jan 10 16:45 N0CLDmayny8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmDahKDm8HWnAn.diag
[2026-01-10 16:45:33] -rw-r--r-- 1 boinc boinc      8699 Jan 10 16:45 stderr.txt
[2026-01-10 16:45:33] No HITS result produced
[2026-01-10 16:45:33]  *** Contents of shared directory: ***
[2026-01-10 16:45:33] total 385524
[2026-01-10 16:45:33] -rw-r--r-- 2 boinc boinc 393996253 Jan 10 16:41 ATLAS.root_0
[2026-01-10 16:45:33] -rw-r--r-- 2 boinc boinc    592612 Jan 10 16:41 input.tar.gz
[2026-01-10 16:45:33] -rw-r--r-- 2 boinc boinc     15847 Jan 10 16:41 start_atlas.sh
[2026-01-10 16:45:33] -rw------- 1 boinc boinc    163840 Jan 10 16:45 result.tar.gz
16:45:35 (3855499): run_atlas exited; CPU time 30.389202
16:45:35 (3855499): called boinc_finish(0)

</stderr_txt>
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