Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:22:10 (2618565): wrapper (7.7.26015): starting
08:22:10 (2618565): wrapper: running run_atlas (--nthreads 9)
[2026-01-10 08:22:10] Arguments: --nthreads 9
[2026-01-10 08:22:10] Threads: 9
[2026-01-10 08:22:10] Checking for CVMFS
[2026-01-10 08:22:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 08:22:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 08:22:11] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 08:22:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 08:22:11] 2.13.3.0 12388 94857 214384 154981 0 140 23687145 32935936 16238 16776704 0 416089940 99.472 554522223 38093 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 08:22:11] CVMFS is ok
[2026-01-10 08:22:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 08:22:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 08:22:11] Further information can be found at the LHC@home message board.
[2026-01-10 08:22:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 08:22:11] Checking for apptainer binary...
[2026-01-10 08:22:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 08:22:11] Running /usr/bin/apptainer --version
[2026-01-10 08:22:11] apptainer version 1.4.5-2.el9
[2026-01-10 08:22:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 08:22:11] c7-4-31.aglt2.org
[2026-01-10 08:22:11] apptainer works
[2026-01-10 08:22:11] Set ATHENA_PROC_NUMBER=9
[2026-01-10 08:22:11] Set ATHENA_CORE_NUMBER=9
[2026-01-10 08:22:11] Starting ATLAS job with PandaID=6965384198
[2026-01-10 08:22:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 09:59:40]  *** The last 200 lines of the pilot log: ***
[2026-01-10 09:59:40]  protocol_id=None
[2026-01-10 09:59:40]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-10 09:59:40]  replicas=None
[2026-01-10 09:59:40]  scope=mc16_13TeV
[2026-01-10 09:59:40]  status=None
[2026-01-10 09:59:40]  status_code=0
[2026-01-10 09:59:40]  storage_token=
[2026-01-10 09:59:40]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6965384198/log.47962010._002339.job.log.tgz.1
[2026-01-10 09:59:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/63/b6/log.47962010._002339.job.log.tgz.1
[2026-01-10 09:59:40]  workdir=None
[2026-01-10 09:59:40] ]
[2026-01-10 09:59:40] 2026-01-10 14:58:25,082 | INFO     | transferring file log.47962010._002339.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6965384198/log.47962010._002339.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-10 09:59:40] 2026-01-10 14:58:25,082 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6965384198/log.47962010._002339.job.log.tgz.1 /tmp/boinchome/slots/2/log.47962010._002339.job
[2026-01-10 09:59:40] 2026-01-10 14:58:25,102 | INFO     | adding to output.list: log.47962010._002339.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/63/b6/log.47962010._002339.job.log.tgz.
[2026-01-10 09:59:40] 2026-01-10 14:58:25,103 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 09:59:40] 2026-01-10 14:58:25,103 | INFO     | summary of transferred files:
[2026-01-10 09:59:40] 2026-01-10 14:58:25,103 | INFO     |  -- lfn=log.47962010._002339.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 09:59:40] 2026-01-10 14:58:25,103 | INFO     | stage-out finished correctly
[2026-01-10 09:59:40] 2026-01-10 14:58:25,141 | INFO     | time since job start (5760s) is within the limit (349056.0s)
[2026-01-10 09:59:40] 2026-01-10 14:58:25,186 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 09:59:40] 2026-01-10 14:58:25,342 | INFO     | job 6965384198 has state=finished
[2026-01-10 09:59:40] 2026-01-10 14:58:25,342 | INFO     | preparing for final server update for job 6965384198 in state='finished'
[2026-01-10 09:59:40] 2026-01-10 14:58:25,343 | INFO     | this job has now completed (state=finished)
[2026-01-10 09:59:40] 2026-01-10 14:58:25,343 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 09:59:40] 2026-01-10 14:58:25,344 | INFO     | log transfer has been attempted: DONE
[2026-01-10 09:59:40] 2026-01-10 14:58:25,344 | INFO     | job 6965384198 has finished - writing final server update
[2026-01-10 09:59:40] 2026-01-10 14:58:25,344 | INFO     | total number of processed events: 50 (read)
[2026-01-10 09:59:40] 2026-01-10 14:58:25,351 | INFO     | executing command: lscpu
[2026-01-10 09:59:40] 2026-01-10 14:58:25,421 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 09:59:40] 2026-01-10 14:58:26,509 | INFO     | monitor loop #356: job 0:6965384198 is in state 'finished'
[2026-01-10 09:59:40] 2026-01-10 14:58:26,509 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 09:59:40] 2026-01-10 14:58:27,149 | INFO     | time since job start (5762s) is within the limit (349056.0s)
[2026-01-10 09:59:40] 2026-01-10 14:58:29,013 | INFO     | monitor loop #357: job 0:6965384198 is in state 'finished'
[2026-01-10 09:59:40] 2026-01-10 14:58:29,015 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 09:59:40] 2026-01-10 14:58:29,154 | INFO     | time since job start (5764s) is within the limit (349056.0s)
[2026-01-10 09:59:40] 2026-01-10 14:58:31,173 | INFO     | time since job start (5766s) is within the limit (349056.0s)
[2026-01-10 09:59:40] 2026-01-10 14:58:31,519 | INFO     | monitor loop #358: job 0:6965384198 is in state 'finished'
[2026-01-10 09:59:40] 2026-01-10 14:58:31,519 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 09:59:40] 2026-01-10 14:58:32,633 | INFO     | PID=2631263 has CPU usage=9.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 09:59:40] 2026-01-10 14:58:32,633 | INFO     | .. there are 15 such processes running
[2026-01-10 09:59:40] 2026-01-10 14:58:33,472 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 09:59:40] 2026-01-10 14:58:33,479 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3095.1075208333336
[2026-01-10 09:59:40] 2026-01-10 14:58:33,495 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6965384198/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 09:59:40] 2026-01-10 14:58:33,496 | INFO     | extracted standard info from prmon json
[2026-01-10 09:59:40] 2026-01-10 14:58:33,497 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 09:59:40] 2026-01-10 14:58:33,497 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 09:59:40] 2026-01-10 14:58:33,499 | INFO     | fitting pss+swap vs Time
[2026-01-10 09:59:40] 2026-01-10 14:58:33,499 | INFO     | sum of square deviations: 204022171.0574714
[2026-01-10 09:59:40] 2026-01-10 14:58:33,500 | INFO     | sum of deviations: -7726698565.885057
[2026-01-10 09:59:40] 2026-01-10 14:58:33,500 | INFO     | mean x: 1768054306.183908
[2026-01-10 09:59:40] 2026-01-10 14:58:33,500 | INFO     | mean y: 2634530.367816092
[2026-01-10 09:59:40] 2026-01-10 14:58:33,500 | INFO     | intersect: 66962135064.99278
[2026-01-10 09:59:40] 2026-01-10 14:58:33,500 | INFO     | chi2: 1.3982341617069407
[2026-01-10 09:59:40] 2026-01-10 14:58:33,500 | INFO     | current memory leak: -37.87 B/s (using 87 data points, chi2=1.40)
[2026-01-10 09:59:40] 2026-01-10 14:58:33,500 | INFO     | could have reported an average CPU frequency of 3172 MHz (7 samples)
[2026-01-10 09:59:40] 2026-01-10 14:58:33,501 | INFO     | ..............................
[2026-01-10 09:59:40] 2026-01-10 14:58:33,501 | INFO     | . Timing measurements:
[2026-01-10 09:59:40] 2026-01-10 14:58:33,501 | INFO     | . get job = 0 s
[2026-01-10 09:59:40] 2026-01-10 14:58:33,501 | INFO     | . initial setup = 2 s
[2026-01-10 09:59:40] 2026-01-10 14:58:33,501 | INFO     | . payload setup = 7 s
[2026-01-10 09:59:40] 2026-01-10 14:58:33,501 | INFO     | . stage-in = 0 s
[2026-01-10 09:59:40] 2026-01-10 14:58:33,501 | INFO     | . payload execution = 5730 s
[2026-01-10 09:59:40] 2026-01-10 14:58:33,501 | INFO     | . stage-out = 0 s
[2026-01-10 09:59:40] 2026-01-10 14:58:33,501 | INFO     | . log creation = 0 s
[2026-01-10 09:59:40] 2026-01-10 14:58:33,501 | INFO     | ..............................
[2026-01-10 09:59:40] 2026-01-10 14:58:33,590 | INFO     | 
[2026-01-10 09:59:40] 2026-01-10 14:58:33,591 | INFO     | job summary report
[2026-01-10 09:59:40] 2026-01-10 14:58:33,591 | INFO     | --------------------------------------------------
[2026-01-10 09:59:40] 2026-01-10 14:58:33,591 | INFO     | PanDA job id: 6965384198
[2026-01-10 09:59:40] 2026-01-10 14:58:33,591 | INFO     | task id: 47962010
[2026-01-10 09:59:40] 2026-01-10 14:58:33,591 | INFO     | errors: (none)
[2026-01-10 09:59:40] 2026-01-10 14:58:33,591 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 09:59:40] 2026-01-10 14:58:33,591 | INFO     | pilot state: finished 
[2026-01-10 09:59:40] 2026-01-10 14:58:33,591 | INFO     | transexitcode: 0
[2026-01-10 09:59:40] 2026-01-10 14:58:33,591 | INFO     | exeerrorcode: 0
[2026-01-10 09:59:40] 2026-01-10 14:58:33,591 | INFO     | exeerrordiag: 
[2026-01-10 09:59:40] 2026-01-10 14:58:33,591 | INFO     | exitcode: 0
[2026-01-10 09:59:40] 2026-01-10 14:58:33,591 | INFO     | exitmsg: OK
[2026-01-10 09:59:40] 2026-01-10 14:58:33,594 | INFO     | cpuconsumptiontime: 10183 s
[2026-01-10 09:59:40] 2026-01-10 14:58:33,594 | INFO     | nevents: 50
[2026-01-10 09:59:40] 2026-01-10 14:58:33,594 | INFO     | neventsw: 0
[2026-01-10 09:59:40] 2026-01-10 14:58:33,594 | INFO     | pid: 2648825
[2026-01-10 09:59:40] 2026-01-10 14:58:33,595 | INFO     | pgrp: 2648825
[2026-01-10 09:59:40] 2026-01-10 14:58:33,595 | INFO     | corecount: 9
[2026-01-10 09:59:40] 2026-01-10 14:58:33,595 | INFO     | event service: False
[2026-01-10 09:59:40] 2026-01-10 14:58:33,595 | INFO     | sizes: {0: 2284396, 1: 2284595, 6: 2284857, 11: 2284885, 5741: 2312251, 5743: 2321429, 5752: 2321619}
[2026-01-10 09:59:40] 2026-01-10 14:58:33,595 | INFO     | --------------------------------------------------
[2026-01-10 09:59:40] 2026-01-10 14:58:33,595 | INFO     | 
[2026-01-10 09:59:40] 2026-01-10 14:58:33,595 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-10 09:59:40] 2026-01-10 14:58:33,618 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 09:59:40] 2026-01-10 14:58:33,618 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 09:59:40] 2026-01-10 14:58:33,618 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 09:59:40] 2026-01-10 14:58:33,618 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 09:59:40] 2026-01-10 14:58:33,618 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 09:59:40] 2026-01-10 14:58:33,618 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 09:59:40] 2026-01-10 14:58:33,619 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 09:59:40] 2026-01-10 14:58:33,619 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 09:59:40] 2026-01-10 14:58:33,619 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 09:59:40] 2026-01-10 14:58:33,619 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 09:59:40] 2026-01-10 14:58:33,619 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 09:59:40] 2026-01-10 14:58:33,619 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 09:59:40] 2026-01-10 14:58:33,619 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 09:59:40] 2026-01-10 14:58:33,619 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 09:59:40] 2026-01-10 14:58:33,619 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 09:59:40] 2026-01-10 14:58:33,619 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 09:59:40] 2026-01-10 14:58:33,619 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 09:59:40] 2026-01-10 14:58:33,619 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 09:59:40] 2026-01-10 14:58:33,619 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 09:59:40] 2026-01-10 14:58:33,620 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 09:59:40] 2026-01-10 14:58:33,620 | INFO     | job 6965384198 has completed (purged errors)
[2026-01-10 09:59:40] 2026-01-10 14:58:33,620 | INFO     | overall cleanup function is called
[2026-01-10 09:59:40] 2026-01-10 14:58:34,638 | INFO     | --- collectZombieJob: --- 10, [2648825]
[2026-01-10 09:59:40] 2026-01-10 14:58:34,639 | INFO     | zombie collector waiting for pid 2648825
[2026-01-10 09:59:40] 2026-01-10 14:58:34,639 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 09:59:40] 2026-01-10 14:58:34,639 | INFO     | collected zombie processes
[2026-01-10 09:59:40] 2026-01-10 14:58:34,639 | INFO     | will attempt to kill all subprocesses of pid=2648825
[2026-01-10 09:59:40] 2026-01-10 14:58:34,994 | INFO     | process IDs to be killed: [2648825] (in reverse order)
[2026-01-10 09:59:40] 2026-01-10 14:58:35,115 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 09:59:40] 2026-01-10 14:58:35,115 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 09:59:40] 2026-01-10 14:58:35,155 | INFO     | did not find any defunct processes belonging to 2648825
[2026-01-10 09:59:40] 2026-01-10 14:58:35,172 | INFO     | did not find any defunct processes belonging to 2648825
[2026-01-10 09:59:40] 2026-01-10 14:58:35,172 | INFO     | ready for new job
[2026-01-10 09:59:40] 2026-01-10 14:58:35,172 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 09:59:40] 2026-01-10 14:58:35,174 | INFO     | ***************************************
[2026-01-10 09:59:40] 2026-01-10 14:58:35,174 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 09:59:40] 2026-01-10 14:58:35,174 | INFO     | ***************************************
[2026-01-10 09:59:40] 2026-01-10 14:58:35,175 | INFO     | 
[2026-01-10 09:59:40] 2026-01-10 14:58:35,179 | INFO     | architecture information:
[2026-01-10 09:59:40] 2026-01-10 14:58:35,180 | INFO     | executing command: cat /etc/os-release
[2026-01-10 09:59:40] 2026-01-10 14:58:35,208 | INFO     | cat /etc/os-release:
[2026-01-10 09:59:40] NAME="CentOS Linux"
[2026-01-10 09:59:40] VERSION="7 (Core)"
[2026-01-10 09:59:40] ID="centos"
[2026-01-10 09:59:40] ID_LIKE="rhel fedora"
[2026-01-10 09:59:40] VERSION_ID="7"
[2026-01-10 09:59:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 09:59:40] ANSI_COLOR="0;31"
[2026-01-10 09:59:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 09:59:40] HOME_URL="https://www.centos.org/"
[2026-01-10 09:59:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 09:59:40] 
[2026-01-10 09:59:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 09:59:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 09:59:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 09:59:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 09:59:40] 
[2026-01-10 09:59:40] 2026-01-10 14:58:35,208 | INFO     | ***************************************
[2026-01-10 09:59:40] 2026-01-10 14:58:35,711 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-10 09:59:40] 2026-01-10 14:58:35,729 | INFO     | sufficient remaining disk space (74741448704 B)
[2026-01-10 09:59:40] 2026-01-10 14:58:35,730 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 09:59:40] 2026-01-10 14:58:35,730 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 09:59:40] 2026-01-10 14:58:35,730 | INFO     | update_server=False
[2026-01-10 09:59:40] 2026-01-10 14:58:35,730 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 09:59:40] 2026-01-10 14:58:35,730 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:59:40] 2026-01-10 14:58:35,730 | INFO     | aborting loop
[2026-01-10 09:59:40] 2026-01-10 14:58:35,730 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 09:59:40] 2026-01-10 14:58:35,777 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 09:59:40] 2026-01-10 14:58:35,961 | INFO     | all job control threads have been joined
[2026-01-10 09:59:40] 2026-01-10 14:58:36,217 | INFO     | all payload control threads have been joined
[2026-01-10 09:59:40] 2026-01-10 14:58:36,462 | INFO     | all data control threads have been joined
[2026-01-10 09:59:40] 2026-01-10 14:58:36,736 | INFO     | [job] retrieve thread has finished
[2026-01-10 09:59:40] 2026-01-10 14:58:36,742 | INFO     | [job] job monitor thread has finished
[2026-01-10 09:59:40] 2026-01-10 14:58:36,837 | INFO     | [data] copytool_in thread has finished
[2026-01-10 09:59:40] 2026-01-10 14:58:36,894 | INFO     | [job] validate thread has finished
[2026-01-10 09:59:40] 2026-01-10 14:58:36,909 | INFO     | [payload] validate_post thread has finished
[2026-01-10 09:59:40] 2026-01-10 14:58:36,968 | INFO     | [job] control thread has finished
[2026-01-10 09:59:40] 2026-01-10 14:58:37,222 | INFO     | [payload] control thread has finished
[2026-01-10 09:59:40] 2026-01-10 14:58:37,398 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 09:59:40] 2026-01-10 14:58:37,470 | INFO     | [data] control thread has finished
[2026-01-10 09:59:40] 2026-01-10 14:58:37,568 | INFO     | [payload] failed_post thread has finished
[2026-01-10 09:59:40] 2026-01-10 14:58:37,569 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 09:59:40] 2026-01-10 14:58:37,738 | INFO     | [data] copytool_out thread has finished
[2026-01-10 09:59:40] 2026-01-10 14:58:37,756 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 09:59:40] 2026-01-10 14:58:37,840 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 09:59:40] 2026-01-10 14:58:38,604 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:59:40] 2026-01-10 14:58:39,610 | INFO     | [job] queue monitor thread has finished
[2026-01-10 09:59:40] 2026-01-10 14:58:39,786 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 09:59:40] 2026-01-10 14:59:05,160 | INFO     | PID=2631263 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 09:59:40] 2026-01-10 14:59:05,160 | INFO     | .. there are 15 such processes running
[2026-01-10 09:59:40] 2026-01-10 14:59:05,160 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 09:59:40] 2026-01-10 14:59:05,160 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 09:59:40] 2026-01-10 14:59:05,160 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 09:59:40] 2026-01-10 14:59:34,711 | INFO     | [monitor] cgroup control has ended
[2026-01-10 09:59:40] 2026-01-10 14:59:34,729 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140695069570880)>', '<ExcThread(monitor, started 140694555432704)>']
[2026-01-10 09:59:40] 2026-01-10 14:59:35,313 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 09:59:40] 2026-01-10 14:59:35,313 | INFO     | [monitor] control thread has ended
[2026-01-10 09:59:40] 2026-01-10 14:59:39,754 | INFO     | all workflow threads have been joined
[2026-01-10 09:59:40] 2026-01-10 14:59:39,757 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 09:59:40] 2026-01-10 14:59:39,757 | INFO     | traces error code: 0
[2026-01-10 09:59:40] 2026-01-10 14:59:39,758 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 09:59:40] 2026-01-10 14:59:39,852 [wrapper] ==== pilot stdout END ====
[2026-01-10 09:59:40] 2026-01-10 14:59:39,854 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 09:59:40] 2026-01-10 14:59:39,856 [wrapper] pilotpid: 2631263
[2026-01-10 09:59:40] 2026-01-10 14:59:39,858 [wrapper] Pilot exit status: 0
[2026-01-10 09:59:40] 2026-01-10 14:59:39,871 [wrapper] pandaids: 6965384198
[2026-01-10 09:59:40] 2026-01-10 14:59:39,952 [wrapper] cleanup supervisor_pilot 2881224 2631264
[2026-01-10 09:59:40] 2026-01-10 14:59:39,956 [wrapper] Test setup, not cleaning
[2026-01-10 09:59:40] 2026-01-10 14:59:39,958 [wrapper] apfmon messages muted
[2026-01-10 09:59:40] 2026-01-10 14:59:39,960 [wrapper] ==== wrapper stdout END ====
[2026-01-10 09:59:40] 2026-01-10 14:59:39,962 [wrapper] ==== wrapper stderr END ====
[2026-01-10 09:59:40]  *** Error codes and diagnostics ***
[2026-01-10 09:59:40]     "exeErrorCode": 0,
[2026-01-10 09:59:40]     "exeErrorDiag": "",
[2026-01-10 09:59:40]     "pilotErrorCode": 0,
[2026-01-10 09:59:40]     "pilotErrorDiag": "",
[2026-01-10 09:59:40]  *** Listing of results directory ***
[2026-01-10 09:59:40] total 433384
[2026-01-10 09:59:40] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:14 pilot3.tar.gz
[2026-01-10 09:59:40] -rwx------. 1 boincer umatlas     36322 Jan 10 08:14 runpilot2-wrapper.sh
[2026-01-10 09:59:40] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:15 queuedata.json
[2026-01-10 09:59:40] -rw-r--r--. 1 boincer umatlas       100 Jan 10 08:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 09:59:40] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 08:22 run_atlas
[2026-01-10 09:59:40] -rw-r--r--. 1 boincer umatlas       105 Jan 10 08:22 job.xml
[2026-01-10 09:59:40] -rw-r--r--. 2 boincer umatlas 392461642 Jan 10 08:22 EVNT.47962006._000093.pool.root.1
[2026-01-10 09:59:40] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:22 start_atlas.sh
[2026-01-10 09:59:40] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 08:22 shared
[2026-01-10 09:59:40] -rw-r--r--. 2 boincer umatlas    592613 Jan 10 08:22 input.tar.gz
[2026-01-10 09:59:40] -rw-r--r--. 1 boincer umatlas         0 Jan 10 08:22 boinc_lockfile
[2026-01-10 09:59:40] -rw-r--r--. 1 boincer umatlas      2889 Jan 10 08:22 pandaJob.out
[2026-01-10 09:59:40] -rw-------. 1 boincer umatlas        57 Jan 10 08:22 setup.sh.local
[2026-01-10 09:59:40] -rw-------. 1 boincer umatlas    989556 Jan 10 08:22 agis_schedconf.cvmfs.json
[2026-01-10 09:59:40] -rw-------. 1 boincer umatlas   1516240 Jan 10 08:22 agis_ddmendpoints.agis.ALL.json
[2026-01-10 09:59:40] drwx------. 5 boincer umatlas      4096 Jan 10 08:22 pilot3
[2026-01-10 09:59:40] -rw-r--r--. 1 boincer umatlas       528 Jan 10 09:46 boinc_task_state.xml
[2026-01-10 09:59:40] -rw-r--r--. 1 boincer umatlas      6943 Jan 10 09:56 init_data.xml
[2026-01-10 09:59:40] -rw-------. 1 boincer umatlas  43242548 Jan 10 09:58 HITS.47962010._002339.pool.root.1
[2026-01-10 09:59:40] -rw-------. 1 boincer umatlas      1028 Jan 10 09:58 memory_monitor_summary.json
[2026-01-10 09:59:40] -rw-------. 1 boincer umatlas        95 Jan 10 09:58 pilot_heartbeat.json
[2026-01-10 09:59:40] -rw-------. 1 boincer umatlas   1303540 Jan 10 09:58 log.47962010._002339.job.log.tgz.1
[2026-01-10 09:59:40] -rw-------. 1 boincer umatlas      8518 Jan 10 09:58 heartbeat.json
[2026-01-10 09:59:40] -rw-r--r--. 1 boincer umatlas        26 Jan 10 09:59 wrapper_checkpoint.txt
[2026-01-10 09:59:40] -rw-------. 1 boincer umatlas      4824 Jan 10 09:59 pilotlog.txt
[2026-01-10 09:59:40] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 09:59 boinc_mmap_file
[2026-01-10 09:59:40] -rw-------. 1 boincer umatlas    775100 Jan 10 09:59 log.47962010._002339.job.log.1
[2026-01-10 09:59:40] -rw-------. 1 boincer umatlas       353 Jan 10 09:59 output.list
[2026-01-10 09:59:40] -rw-r--r--. 1 boincer umatlas       620 Jan 10 09:59 runtime_log
[2026-01-10 09:59:40] -rw-------. 1 boincer umatlas   2099200 Jan 10 09:59 result.tar.gz
[2026-01-10 09:59:40] -rw-r--r--. 1 boincer umatlas      9337 Jan 10 09:59 runtime_log.err
[2026-01-10 09:59:40] -rw-------. 1 boincer umatlas       651 Jan 10 09:59 3DMLDmSyny8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmbqmKDmZxjBrm.diag
[2026-01-10 09:59:40] -rw-r--r--. 1 boincer umatlas     21983 Jan 10 09:59 stderr.txt
[2026-01-10 09:59:40] HITS file was successfully produced:
[2026-01-10 09:59:40] -rw-------. 1 boincer umatlas 43242548 Jan 10 09:58 shared/HITS.pool.root.1
[2026-01-10 09:59:40]  *** Contents of shared directory: ***
[2026-01-10 09:59:40] total 428148
[2026-01-10 09:59:40] -rw-r--r--. 2 boincer umatlas 392461642 Jan 10 08:22 ATLAS.root_0
[2026-01-10 09:59:40] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:22 start_atlas.sh
[2026-01-10 09:59:40] -rw-r--r--. 2 boincer umatlas    592613 Jan 10 08:22 input.tar.gz
[2026-01-10 09:59:40] -rw-------. 1 boincer umatlas  43242548 Jan 10 09:58 HITS.pool.root.1
[2026-01-10 09:59:40] -rw-------. 1 boincer umatlas   2099200 Jan 10 09:59 result.tar.gz
09:59:41 (2618565): run_atlas exited; CPU time 10209.231280
09:59:41 (2618565): called boinc_finish(0)

</stderr_txt>
]]>

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