Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:21:48 (859737): wrapper (7.7.26015): starting
08:21:48 (859737): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 08:21:48] Arguments: --nthreads 8
[2026-01-10 08:21:48] Threads: 8
[2026-01-10 08:21:48] Checking for CVMFS
[2026-01-10 08:21:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 08:21:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 08:21:49] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 08:21:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 08:21:50] 2.13.3.0 6634 23781 190716 154981 3 82 22479264 40960001 11720 16776704 0 26006584 99.728 19393781 46570 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 08:21:50] CVMFS is ok
[2026-01-10 08:21:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 08:21:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 08:21:50] Further information can be found at the LHC@home message board.
[2026-01-10 08:21:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 08:21:50] Checking for apptainer binary...
[2026-01-10 08:21:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 08:21:51] Running /usr/bin/apptainer --version
[2026-01-10 08:21:51] apptainer version 1.4.5-2.el9
[2026-01-10 08:21:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 08:21:52] c-206-37.aglt2.org
[2026-01-10 08:21:52] apptainer works
[2026-01-10 08:21:52] Set ATHENA_PROC_NUMBER=8
[2026-01-10 08:21:52] Set ATHENA_CORE_NUMBER=8
[2026-01-10 08:21:52] Starting ATLAS job with PandaID=6965384184
[2026-01-10 08:21:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 10:08:21]  *** The last 200 lines of the pilot log: ***
[2026-01-10 10:08:21] 2026-01-10 15:07:17,605 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6965384184/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 10:08:21] 2026-01-10 15:07:18,032 | INFO     | number of running child processes to parent process 882185: 1
[2026-01-10 10:08:21] 2026-01-10 15:07:18,032 | INFO     | maximum number of monitored processes: 16
[2026-01-10 10:08:21] 2026-01-10 15:07:19,169 | INFO     | time since job start (6253s) is within the limit (349056.0s)
[2026-01-10 10:08:21] 2026-01-10 15:07:20,536 | INFO     | monitor loop #465: job 0:6965384184 is in state 'finished'
[2026-01-10 10:08:21] 2026-01-10 15:07:20,536 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:08:21] 2026-01-10 15:07:21,176 | INFO     | time since job start (6255s) is within the limit (349056.0s)
[2026-01-10 10:08:21] 2026-01-10 15:07:23,040 | INFO     | monitor loop #466: job 0:6965384184 is in state 'finished'
[2026-01-10 10:08:21] 2026-01-10 15:07:23,040 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:08:21] 2026-01-10 15:07:23,183 | INFO     | time since job start (6257s) is within the limit (349056.0s)
[2026-01-10 10:08:21] 2026-01-10 15:07:23,556 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 10:08:21] 2026-01-10 15:07:23,560 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3288.9991249999994
[2026-01-10 10:08:21] 2026-01-10 15:07:23,569 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6965384184/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 10:08:21] 2026-01-10 15:07:23,569 | INFO     | extracted standard info from prmon json
[2026-01-10 10:08:21] 2026-01-10 15:07:23,570 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 10:08:21] 2026-01-10 15:07:23,570 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 10:08:21] 2026-01-10 15:07:23,572 | INFO     | fitting pss+swap vs Time
[2026-01-10 10:08:21] 2026-01-10 15:07:23,572 | INFO     | sum of square deviations: 310218796.00000066
[2026-01-10 10:08:21] 2026-01-10 15:07:23,572 | INFO     | sum of deviations: 99404569498.59998
[2026-01-10 10:08:21] 2026-01-10 15:07:23,572 | INFO     | mean x: 1768054581.6
[2026-01-10 10:08:21] 2026-01-10 15:07:23,572 | INFO     | mean y: 2026488.39
[2026-01-10 10:08:21] 2026-01-10 15:07:23,573 | INFO     | intersect: -566542318342.266
[2026-01-10 10:08:21] 2026-01-10 15:07:23,573 | INFO     | chi2: 18.215800467955898
[2026-01-10 10:08:21] 2026-01-10 15:07:23,573 | INFO     | sum of square deviations: 266016301.2210522
[2026-01-10 10:08:21] 2026-01-10 15:07:23,573 | INFO     | sum of deviations: 111682518727.621
[2026-01-10 10:08:21] 2026-01-10 15:07:23,573 | INFO     | mean x: 1768054429.136842
[2026-01-10 10:08:21] 2026-01-10 15:07:23,573 | INFO     | mean y: 2068030.3368421053
[2026-01-10 10:08:21] 2026-01-10 15:07:23,573 | INFO     | intersect: -742286171401.4421
[2026-01-10 10:08:21] 2026-01-10 15:07:23,574 | INFO     | chi2: 14.860112897348438
[2026-01-10 10:08:21] 2026-01-10 15:07:23,574 | INFO     | current chi2=14.860112897348438 (change=18.42185072520187 %)
[2026-01-10 10:08:21] 2026-01-10 15:07:23,574 | INFO     | right removable region: 94
[2026-01-10 10:08:21] 2026-01-10 15:07:23,574 | INFO     | sum of square deviations: 265961154.63157895
[2026-01-10 10:08:21] 2026-01-10 15:07:23,574 | INFO     | sum of deviations: 70511527673.63158
[2026-01-10 10:08:21] 2026-01-10 15:07:23,574 | INFO     | mean x: 1768054734.1578948
[2026-01-10 10:08:21] 2026-01-10 15:07:23,574 | INFO     | mean y: 2126015.357894737
[2026-01-10 10:08:21] 2026-01-10 15:07:23,574 | INFO     | intersect: -468743922589.9944
[2026-01-10 10:08:21] 2026-01-10 15:07:23,575 | INFO     | chi2: 13.410901544080698
[2026-01-10 10:08:21] 2026-01-10 15:07:23,575 | INFO     | current chi2=13.410901544080698 (change=26.377643586553766 %)
[2026-01-10 10:08:21] 2026-01-10 15:07:23,575 | INFO     | sum of square deviations: 226122200.05555567
[2026-01-10 10:08:21] 2026-01-10 15:07:23,575 | INFO     | sum of deviations: 45917080590.00002
[2026-01-10 10:08:21] 2026-01-10 15:07:23,575 | INFO     | mean x: 1768054886.7222223
[2026-01-10 10:08:21] 2026-01-10 15:07:23,575 | INFO     | mean y: 2220136.2
[2026-01-10 10:08:21] 2026-01-10 15:07:23,575 | INFO     | intersect: -359024530449.19885
[2026-01-10 10:08:21] 2026-01-10 15:07:23,575 | INFO     | chi2: 10.093004207543007
[2026-01-10 10:08:21] 2026-01-10 15:07:23,576 | INFO     | current chi2=10.093004207543007 (change=24.74030046102414 %)
[2026-01-10 10:08:21] 2026-01-10 15:07:23,576 | INFO     | left removable region: 20
[2026-01-10 10:08:21] 2026-01-10 15:07:23,576 | INFO     | sum of square deviations: 125688543.78378361
[2026-01-10 10:08:21] 2026-01-10 15:07:23,576 | INFO     | sum of deviations: 16085922079.702698
[2026-01-10 10:08:21] 2026-01-10 15:07:23,576 | INFO     | mean x: 1768055008.945946
[2026-01-10 10:08:21] 2026-01-10 15:07:23,576 | INFO     | mean y: 2517584.6756756757
[2026-01-10 10:08:21] 2026-01-10 15:07:23,576 | INFO     | intersect: -226277414144.48788
[2026-01-10 10:08:21] 2026-01-10 15:07:23,576 | INFO     | chi2: 1.4754344372142403
[2026-01-10 10:08:21] 2026-01-10 15:07:23,576 | INFO     | current memory leak: 127.98 B/s (using 74 data points, chi2=1.48)
[2026-01-10 10:08:21] 2026-01-10 15:07:23,577 | INFO     | could have reported an average CPU frequency of 3291 MHz (7 samples)
[2026-01-10 10:08:21] 2026-01-10 15:07:23,577 | INFO     | ..............................
[2026-01-10 10:08:21] 2026-01-10 15:07:23,577 | INFO     | . Timing measurements:
[2026-01-10 10:08:21] 2026-01-10 15:07:23,577 | INFO     | . get job = 0 s
[2026-01-10 10:08:21] 2026-01-10 15:07:23,577 | INFO     | . initial setup = 6 s
[2026-01-10 10:08:21] 2026-01-10 15:07:23,577 | INFO     | . payload setup = 69 s
[2026-01-10 10:08:21] 2026-01-10 15:07:23,577 | INFO     | . stage-in = 0 s
[2026-01-10 10:08:21] 2026-01-10 15:07:23,577 | INFO     | . payload execution = 6090 s
[2026-01-10 10:08:21] 2026-01-10 15:07:23,577 | INFO     | . stage-out = 0 s
[2026-01-10 10:08:21] 2026-01-10 15:07:23,577 | INFO     | . log creation = 0 s
[2026-01-10 10:08:21] 2026-01-10 15:07:23,577 | INFO     | ..............................
[2026-01-10 10:08:21] 2026-01-10 15:07:23,654 | INFO     | 
[2026-01-10 10:08:21] 2026-01-10 15:07:23,654 | INFO     | job summary report
[2026-01-10 10:08:21] 2026-01-10 15:07:23,654 | INFO     | --------------------------------------------------
[2026-01-10 10:08:21] 2026-01-10 15:07:23,654 | INFO     | PanDA job id: 6965384184
[2026-01-10 10:08:21] 2026-01-10 15:07:23,654 | INFO     | task id: 47962010
[2026-01-10 10:08:21] 2026-01-10 15:07:23,655 | INFO     | errors: (none)
[2026-01-10 10:08:21] 2026-01-10 15:07:23,655 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 10:08:21] 2026-01-10 15:07:23,655 | INFO     | pilot state: finished 
[2026-01-10 10:08:21] 2026-01-10 15:07:23,655 | INFO     | transexitcode: 0
[2026-01-10 10:08:21] 2026-01-10 15:07:23,655 | INFO     | exeerrorcode: 0
[2026-01-10 10:08:21] 2026-01-10 15:07:23,655 | INFO     | exeerrordiag: 
[2026-01-10 10:08:21] 2026-01-10 15:07:23,655 | INFO     | exitcode: 0
[2026-01-10 10:08:21] 2026-01-10 15:07:23,655 | INFO     | exitmsg: OK
[2026-01-10 10:08:21] 2026-01-10 15:07:23,655 | INFO     | cpuconsumptiontime: 12500 s
[2026-01-10 10:08:21] 2026-01-10 15:07:23,655 | INFO     | nevents: 50
[2026-01-10 10:08:21] 2026-01-10 15:07:23,655 | INFO     | neventsw: 0
[2026-01-10 10:08:21] 2026-01-10 15:07:23,655 | INFO     | pid: 882185
[2026-01-10 10:08:21] 2026-01-10 15:07:23,655 | INFO     | pgrp: 882185
[2026-01-10 10:08:21] 2026-01-10 15:07:23,655 | INFO     | corecount: 8
[2026-01-10 10:08:21] 2026-01-10 15:07:23,655 | INFO     | event service: False
[2026-01-10 10:08:21] 2026-01-10 15:07:23,655 | INFO     | sizes: {0: 2284342, 1: 2284597, 12: 2284597, 23: 2284625, 34: 2284943, 44: 2284943, 6164: 2312635, 6166: 2321629, 6167: 2321685, 6176: 2321931}
[2026-01-10 10:08:21] 2026-01-10 15:07:23,655 | INFO     | --------------------------------------------------
[2026-01-10 10:08:21] 2026-01-10 15:07:23,656 | INFO     | 
[2026-01-10 10:08:21] 2026-01-10 15:07:23,656 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-10 10:08:21] 2026-01-10 15:07:23,701 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 10:08:21] 2026-01-10 15:07:23,701 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 10:08:21] 2026-01-10 15:07:23,701 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 10:08:21] 2026-01-10 15:07:23,701 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 10:08:21] 2026-01-10 15:07:23,701 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 10:08:21] 2026-01-10 15:07:23,701 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 10:08:21] 2026-01-10 15:07:23,701 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 10:08:21] 2026-01-10 15:07:23,701 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 10:08:21] 2026-01-10 15:07:23,701 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 10:08:21] 2026-01-10 15:07:23,701 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 10:08:21] 2026-01-10 15:07:23,702 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 10:08:21] 2026-01-10 15:07:23,702 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 10:08:21] 2026-01-10 15:07:23,702 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 10:08:21] 2026-01-10 15:07:23,702 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 10:08:21] 2026-01-10 15:07:23,702 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 10:08:21] 2026-01-10 15:07:23,702 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 10:08:21] 2026-01-10 15:07:23,703 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 10:08:21] 2026-01-10 15:07:23,703 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 10:08:21] 2026-01-10 15:07:23,703 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 10:08:21] 2026-01-10 15:07:23,703 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 10:08:21] 2026-01-10 15:07:23,704 | INFO     | job 6965384184 has completed (purged errors)
[2026-01-10 10:08:21] 2026-01-10 15:07:23,704 | INFO     | overall cleanup function is called
[2026-01-10 10:08:21] 2026-01-10 15:07:24,718 | INFO     | --- collectZombieJob: --- 10, [882185]
[2026-01-10 10:08:21] 2026-01-10 15:07:24,719 | INFO     | zombie collector waiting for pid 882185
[2026-01-10 10:08:21] 2026-01-10 15:07:24,719 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 10:08:21] 2026-01-10 15:07:24,719 | INFO     | collected zombie processes
[2026-01-10 10:08:21] 2026-01-10 15:07:24,719 | INFO     | will attempt to kill all subprocesses of pid=882185
[2026-01-10 10:08:21] 2026-01-10 15:07:25,022 | INFO     | process IDs to be killed: [882185] (in reverse order)
[2026-01-10 10:08:21] 2026-01-10 15:07:25,117 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 10:08:21] 2026-01-10 15:07:25,118 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 10:08:21] 2026-01-10 15:07:25,139 | INFO     | did not find any defunct processes belonging to 882185
[2026-01-10 10:08:21] 2026-01-10 15:07:25,157 | INFO     | did not find any defunct processes belonging to 882185
[2026-01-10 10:08:21] 2026-01-10 15:07:25,157 | INFO     | ready for new job
[2026-01-10 10:08:21] 2026-01-10 15:07:25,158 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 10:08:21] 2026-01-10 15:07:25,163 | INFO     | ***************************************
[2026-01-10 10:08:21] 2026-01-10 15:07:25,163 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 10:08:21] 2026-01-10 15:07:25,163 | INFO     | ***************************************
[2026-01-10 10:08:21] 2026-01-10 15:07:25,163 | INFO     | 
[2026-01-10 10:08:21] 2026-01-10 15:07:25,171 | INFO     | architecture information:
[2026-01-10 10:08:21] 2026-01-10 15:07:25,183 | INFO     | executing command: cat /etc/os-release
[2026-01-10 10:08:21] 2026-01-10 15:07:25,201 | INFO     | cat /etc/os-release:
[2026-01-10 10:08:21] NAME="CentOS Linux"
[2026-01-10 10:08:21] VERSION="7 (Core)"
[2026-01-10 10:08:21] ID="centos"
[2026-01-10 10:08:21] ID_LIKE="rhel fedora"
[2026-01-10 10:08:21] VERSION_ID="7"
[2026-01-10 10:08:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 10:08:21] ANSI_COLOR="0;31"
[2026-01-10 10:08:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 10:08:21] HOME_URL="https://www.centos.org/"
[2026-01-10 10:08:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 10:08:21] 
[2026-01-10 10:08:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 10:08:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 10:08:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 10:08:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 10:08:21] 
[2026-01-10 10:08:21] 2026-01-10 15:07:25,202 | INFO     | ***************************************
[2026-01-10 10:08:21] 2026-01-10 15:07:25,705 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-10 10:08:21] 2026-01-10 15:07:25,729 | INFO     | sufficient remaining disk space (84725989376 B)
[2026-01-10 10:08:21] 2026-01-10 15:07:25,729 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 10:08:21] 2026-01-10 15:07:25,730 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 10:08:21] 2026-01-10 15:07:25,730 | INFO     | update_server=False
[2026-01-10 10:08:21] 2026-01-10 15:07:25,730 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 10:08:21] 2026-01-10 15:07:25,730 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 10:08:21] 2026-01-10 15:07:26,083 | INFO     | all data control threads have been joined
[2026-01-10 10:08:21] 2026-01-10 15:07:26,358 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 10:08:21] 2026-01-10 15:07:26,545 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 10:08:21] 2026-01-10 15:07:26,546 | INFO     | aborting loop
[2026-01-10 10:08:21] 2026-01-10 15:07:26,720 | INFO     | all job control threads have been joined
[2026-01-10 10:08:21] 2026-01-10 15:07:26,737 | INFO     | [job] retrieve thread has finished
[2026-01-10 10:08:21] 2026-01-10 15:07:26,742 | INFO     | [job] validate thread has finished
[2026-01-10 10:08:21] 2026-01-10 15:07:26,957 | INFO     | [payload] failed_post thread has finished
[2026-01-10 10:08:21] 2026-01-10 15:07:26,958 | INFO     | [payload] validate_post thread has finished
[2026-01-10 10:08:21] 2026-01-10 15:07:26,989 | INFO     | [data] copytool_in thread has finished
[2026-01-10 10:08:21] 2026-01-10 15:07:26,997 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 10:08:21] 2026-01-10 15:07:27,088 | INFO     | [data] control thread has finished
[2026-01-10 10:08:21] 2026-01-10 15:07:27,146 | INFO     | all payload control threads have been joined
[2026-01-10 10:08:21] 2026-01-10 15:07:27,358 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 10:08:21] 2026-01-10 15:07:27,467 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 10:08:21] 2026-01-10 15:07:27,492 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 10:08:21] 2026-01-10 15:07:27,552 | INFO     | [job] job monitor thread has finished
[2026-01-10 10:08:21] 2026-01-10 15:07:27,720 | INFO     | [job] control thread has finished
[2026-01-10 10:08:21] 2026-01-10 15:07:28,146 | INFO     | [payload] control thread has finished
[2026-01-10 10:08:21] 2026-01-10 15:07:28,359 | INFO     | [data] copytool_out thread has finished
[2026-01-10 10:08:21] 2026-01-10 15:07:28,669 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 10:08:21] 2026-01-10 15:07:29,675 | INFO     | [job] queue monitor thread has finished
[2026-01-10 10:08:21] 2026-01-10 15:07:29,741 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 10:08:21] 2026-01-10 15:07:55,878 [wrapper] supervise_pilot (15 min periods counter: 8)
[2026-01-10 10:08:21] 2026-01-10 15:07:56,527 | INFO     | PID=873820 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 10:08:21] 2026-01-10 15:07:56,529 | INFO     | .. there are 10 such processes running
[2026-01-10 10:08:21] 2026-01-10 15:07:56,530 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 10:08:21] 2026-01-10 15:07:56,531 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 10:08:21] 2026-01-10 15:07:56,531 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 10:08:21] 2026-01-10 15:08:16,169 | INFO     | [monitor] cgroup control has ended
[2026-01-10 10:08:21] 2026-01-10 15:08:16,350 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139898126731072)>', '<ExcThread(monitor, started 139897679636224)>']
[2026-01-10 10:08:21] 2026-01-10 15:08:16,638 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 10:08:21] 2026-01-10 15:08:16,639 | INFO     | [monitor] control thread has ended
[2026-01-10 10:08:21] 2026-01-10 15:08:21,376 | INFO     | all workflow threads have been joined
[2026-01-10 10:08:21] 2026-01-10 15:08:21,376 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 10:08:21] 2026-01-10 15:08:21,376 | INFO     | traces error code: 0
[2026-01-10 10:08:21] 2026-01-10 15:08:21,377 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 10:08:21] 2026-01-10 15:08:21,525 [wrapper] ==== pilot stdout END ====
[2026-01-10 10:08:21] 2026-01-10 15:08:21,530 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 10:08:21] 2026-01-10 15:08:21,537 [wrapper] pilotpid: 873820
[2026-01-10 10:08:21] 2026-01-10 15:08:21,540 [wrapper] Pilot exit status: 0
[2026-01-10 10:08:21] 2026-01-10 15:08:21,578 [wrapper] pandaids: 6965384184
[2026-01-10 10:08:21] 2026-01-10 15:08:21,653 [wrapper] cleanup supervisor_pilot 1041452 873821
[2026-01-10 10:08:21] 2026-01-10 15:08:21,656 [wrapper] Test setup, not cleaning
[2026-01-10 10:08:21] 2026-01-10 15:08:21,660 [wrapper] apfmon messages muted
[2026-01-10 10:08:21] 2026-01-10 15:08:21,663 [wrapper] ==== wrapper stdout END ====
[2026-01-10 10:08:21] 2026-01-10 15:08:21,666 [wrapper] ==== wrapper stderr END ====
[2026-01-10 10:08:21]  *** Error codes and diagnostics ***
[2026-01-10 10:08:21]     "exeErrorCode": 0,
[2026-01-10 10:08:21]     "exeErrorDiag": "",
[2026-01-10 10:08:21]     "pilotErrorCode": 0,
[2026-01-10 10:08:21]     "pilotErrorDiag": "",
[2026-01-10 10:08:21]  *** Listing of results directory ***
[2026-01-10 10:08:21] total 435272
[2026-01-10 10:08:21] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 08:14 pilot3.tar.gz
[2026-01-10 10:08:21] -rwx------. 1 boincer umatlas     36322 Jan 10 08:14 runpilot2-wrapper.sh
[2026-01-10 10:08:21] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 08:15 queuedata.json
[2026-01-10 10:08:21] -rw-r--r--. 1 boincer umatlas       100 Jan 10 08:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 10:08:21] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 08:21 run_atlas
[2026-01-10 10:08:21] -rw-r--r--. 1 boincer umatlas       105 Jan 10 08:21 job.xml
[2026-01-10 10:08:21] -rw-r--r--. 2 boincer umatlas 392320194 Jan 10 08:21 EVNT.47962006._000088.pool.root.1
[2026-01-10 10:08:21] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:21 start_atlas.sh
[2026-01-10 10:08:21] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 08:21 shared
[2026-01-10 10:08:21] -rw-r--r--. 2 boincer umatlas    592620 Jan 10 08:21 input.tar.gz
[2026-01-10 10:08:21] -rw-r--r--. 1 boincer umatlas         0 Jan 10 08:21 boinc_lockfile
[2026-01-10 10:08:21] -rw-r--r--. 1 boincer umatlas      2890 Jan 10 08:21 pandaJob.out
[2026-01-10 10:08:21] -rw-------. 1 boincer umatlas        57 Jan 10 08:21 setup.sh.local
[2026-01-10 10:08:21] -rw-------. 1 boincer umatlas    989556 Jan 10 08:23 agis_schedconf.cvmfs.json
[2026-01-10 10:08:21] -rw-------. 1 boincer umatlas   1516240 Jan 10 08:23 agis_ddmendpoints.agis.ALL.json
[2026-01-10 10:08:21] drwx------. 5 boincer umatlas      4096 Jan 10 08:23 pilot3
[2026-01-10 10:08:21] -rw-r--r--. 1 boincer umatlas       529 Jan 10 09:55 boinc_task_state.xml
[2026-01-10 10:08:21] -rw-r--r--. 1 boincer umatlas      6904 Jan 10 10:00 init_data.xml
[2026-01-10 10:08:21] -rw-------. 1 boincer umatlas  45260375 Jan 10 10:07 HITS.47962010._002325.pool.root.1
[2026-01-10 10:08:21] -rw-------. 1 boincer umatlas      1025 Jan 10 10:07 memory_monitor_summary.json
[2026-01-10 10:08:21] -rw-------. 1 boincer umatlas   1217792 Jan 10 10:07 log.47962010._002325.job.log.tgz.1
[2026-01-10 10:08:21] -rw-------. 1 boincer umatlas      8522 Jan 10 10:07 heartbeat.json
[2026-01-10 10:08:21] -rw-------. 1 boincer umatlas        95 Jan 10 10:07 pilot_heartbeat.json
[2026-01-10 10:08:21] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 10:08 boinc_mmap_file
[2026-01-10 10:08:21] -rw-r--r--. 1 boincer umatlas        27 Jan 10 10:08 wrapper_checkpoint.txt
[2026-01-10 10:08:21] -rw-------. 1 boincer umatlas      4823 Jan 10 10:08 pilotlog.txt
[2026-01-10 10:08:21] -rw-------. 1 boincer umatlas    891981 Jan 10 10:08 log.47962010._002325.job.log.1
[2026-01-10 10:08:21] -rw-------. 1 boincer umatlas       353 Jan 10 10:08 output.list
[2026-01-10 10:08:21] -rw-r--r--. 1 boincer umatlas       620 Jan 10 10:08 runtime_log
[2026-01-10 10:08:21] -rw-------. 1 boincer umatlas   2129920 Jan 10 10:08 result.tar.gz
[2026-01-10 10:08:21] -rw-r--r--. 1 boincer umatlas      9342 Jan 10 10:08 runtime_log.err
[2026-01-10 10:08:21] -rw-------. 1 boincer umatlas       654 Jan 10 10:08 L7FLDmSyny8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWqmKDm8GUeXn.diag
[2026-01-10 10:08:21] -rw-r--r--. 1 boincer umatlas     21418 Jan 10 10:08 stderr.txt
[2026-01-10 10:08:21] HITS file was successfully produced:
[2026-01-10 10:08:21] -rw-------. 1 boincer umatlas 45260375 Jan 10 10:07 shared/HITS.pool.root.1
[2026-01-10 10:08:21]  *** Contents of shared directory: ***
[2026-01-10 10:08:21] total 430008
[2026-01-10 10:08:21] -rw-r--r--. 2 boincer umatlas 392320194 Jan 10 08:21 ATLAS.root_0
[2026-01-10 10:08:21] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 08:21 start_atlas.sh
[2026-01-10 10:08:21] -rw-r--r--. 2 boincer umatlas    592620 Jan 10 08:21 input.tar.gz
[2026-01-10 10:08:21] -rw-------. 1 boincer umatlas  45260375 Jan 10 10:07 HITS.pool.root.1
[2026-01-10 10:08:21] -rw-------. 1 boincer umatlas   2129920 Jan 10 10:08 result.tar.gz
10:08:43 (859737): run_atlas exited; CPU time 12522.970660
10:08:43 (859737): called boinc_finish(0)

</stderr_txt>
]]>

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